Planteome associations git - associations/.git/commit

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author	Justin Elser <elserj@science.oregonstate.edu>
	Tue, 29 Jul 2025 23:02:11 +0000 (16:02 -0700)
committer	Justin Elser <elserj@science.oregonstate.edu>
	Tue, 29 Jul 2025 23:02:11 +0000 (16:02 -0700)
commit	6a59f104a05b098eb2cf78c8445cbe0603a34948
tree	8662d9bf8aa3eb16eca73aad93a85802e3c4d925	tree \| snapshot
parent	8cf80a1619b2bdd6b69885c3a0d8c88d14dfcf64	commit \| diff

Change all obsoleted GO terms with known replacements

245 files changed:

go-associations/Test_PPPP_GO/GO_ontology_IMP_gene_arabidopsis.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_aegilops_tauschii.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_amborella_trichopoda.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_arabidopsis_lyrata.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_arabidopsis_thaliana.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_brachypodium_distachyon.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_brassica_rapa.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_chlamydomonas_reinhardtii.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_cyanidioschyzon_merolae.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_glycine_max.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_hordeum_vulgare.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_medicago_truncatula.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_musa_acuminata.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_oryza_barthii.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_oryza_brachyantha.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_oryza_glaberrima.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_oryza_glumaepatula.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_oryza_indica.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_oryza_meridionalis.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_oryza_nivara.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_oryza_punctata.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_oryza_sativa.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_oryza_sativa_indica.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_oryza_sativa_japonica.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_physcomitrella_patens.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_populus_trichocarpa.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_prunus_persica.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_selaginella_moellendorffii.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_setaria_italica.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_solanum_lycopersicum.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_solanum_tuberosum.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_sorghum_bicolor.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_triticum_aestivum.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_triticum_urartu.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_vitis_vinifera.assoc		diff \| blob \| history
go-associations/go_ensembl/go_ensembl_zea_mays.assoc		diff \| blob \| history
go-associations/go_gene_Arabidopsis_Tair.assoc		diff \| blob \| history
go-associations/go_gene_Oryza_Gramene.assoc		diff \| blob \| history
go-associations/go_gene_Prunus_yedoensis_var.nudiflora.assoc		diff \| blob \| history
go-associations/go_gene_Solanaceae_SGN.assoc		diff \| blob \| history
go-associations/go_geneproduct_Prunus_persica_GDR.assoc		diff \| blob \| history
go-associations/go_iprscan_Aegilops_tauschii.assoc		diff \| blob \| history
go-associations/go_iprscan_Amborella_trichopoda.assoc		diff \| blob \| history
go-associations/go_iprscan_Arabidopsis_halleri.assoc		diff \| blob \| history
go-associations/go_iprscan_Arabidopsis_lyrata.assoc		diff \| blob \| history
go-associations/go_iprscan_Arabidopsis_thaliana.assoc		diff \| blob \| history
go-associations/go_iprscan_Arachis_duranensis.assoc		diff \| blob \| history
go-associations/go_iprscan_Arachis_ipaensis.assoc		diff \| blob \| history
go-associations/go_iprscan_Asparagus_officinalis.assoc		diff \| blob \| history
go-associations/go_iprscan_Azolla_filiculoides.assoc		diff \| blob \| history
go-associations/go_iprscan_Brachypodium_distachyon.assoc		diff \| blob \| history
go-associations/go_iprscan_Brachypodium_sylvaticum.Corvallis.assoc		diff \| blob \| history
go-associations/go_iprscan_Brachypodium_sylvaticum.Greece.assoc		diff \| blob \| history
go-associations/go_iprscan_Brachypodium_sylvaticum.Spain.assoc		diff \| blob \| history
go-associations/go_iprscan_Brassica_oleracea.assoc		diff \| blob \| history
go-associations/go_iprscan_Brassica_rapa.assoc		diff \| blob \| history
go-associations/go_iprscan_Cajanus_cajan.assoc		diff \| blob \| history
go-associations/go_iprscan_Cannabis_sativa.CRBRx.assoc		diff \| blob \| history
go-associations/go_iprscan_Cannabis_sativa.Purple.Kush.assoc		diff \| blob \| history
go-associations/go_iprscan_Capsella_rubella.assoc		diff \| blob \| history
go-associations/go_iprscan_Capsicum_annuum.assoc		diff \| blob \| history
go-associations/go_iprscan_Carica_papaya.assoc		diff \| blob \| history
go-associations/go_iprscan_Chlamydomonas_reinhardtii.assoc		diff \| blob \| history
go-associations/go_iprscan_Chondrus_crispus.assoc		diff \| blob \| history
go-associations/go_iprscan_Cicer_arietinum.assoc		diff \| blob \| history
go-associations/go_iprscan_Citrullus_lanatus.assoc		diff \| blob \| history
go-associations/go_iprscan_Citrus_clementina.assoc		diff \| blob \| history
go-associations/go_iprscan_Citrus_sinensis.assoc		diff \| blob \| history
go-associations/go_iprscan_Coffea_canephora.assoc		diff \| blob \| history
go-associations/go_iprscan_Corchorus_capsularis.assoc		diff \| blob \| history
go-associations/go_iprscan_Corchorus_olitorius.assoc		diff \| blob \| history
go-associations/go_iprscan_Cornus_florida.assoc		diff \| blob \| history
go-associations/go_iprscan_Cucumis_sativus.assoc		diff \| blob \| history
go-associations/go_iprscan_Durio_zibethinus.assoc		diff \| blob \| history
go-associations/go_iprscan_Ectocarpus_siliculosus.assoc		diff \| blob \| history
go-associations/go_iprscan_Erythranthe_guttata.assoc		diff \| blob \| history
go-associations/go_iprscan_Eucalyptus_grandis.assoc		diff \| blob \| history
go-associations/go_iprscan_Fragaria_vesca.assoc		diff \| blob \| history
go-associations/go_iprscan_Glycine_max.assoc		diff \| blob \| history
go-associations/go_iprscan_Gossypium_raimondii.assoc		diff \| blob \| history
go-associations/go_iprscan_Hordeum_vulgare.assoc		diff \| blob \| history
go-associations/go_iprscan_Humulus_lupulus.haplotig.assoc		diff \| blob \| history
go-associations/go_iprscan_Humulus_lupulus.primary.assoc		diff \| blob \| history
go-associations/go_iprscan_Jatropha_curcas.assoc		diff \| blob \| history
go-associations/go_iprscan_Leersia_perrieri.assoc		diff \| blob \| history
go-associations/go_iprscan_Linum_usitatissimum.assoc		diff \| blob \| history
go-associations/go_iprscan_Malus_domestica.assoc		diff \| blob \| history
go-associations/go_iprscan_Manihot_esculenta.assoc		diff \| blob \| history
go-associations/go_iprscan_Medicago_truncatula.assoc		diff \| blob \| history
go-associations/go_iprscan_Mentha_longifolia.assoc		diff \| blob \| history
go-associations/go_iprscan_Musa_acuminata.assoc		diff \| blob \| history
go-associations/go_iprscan_Nelumbo_nucifera.assoc		diff \| blob \| history
go-associations/go_iprscan_Nicotiana_attenuata.assoc		diff \| blob \| history
go-associations/go_iprscan_Nostoc_punctiforme.pcc.73102.assoc		diff \| blob \| history
go-associations/go_iprscan_Ocimum_tenuiflorum.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_barthii.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_brachyantha.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_glaberrima.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_glumipatula.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_granulata.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_longistaminata.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_meridionalis.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_minuta.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_nivara.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_officinalis.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_punctata.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_rufipogon.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_sativa.AUS.N22.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_sativa.AUS.kasalath.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_sativa.indica.assoc		diff \| blob \| history
go-associations/go_iprscan_Oryza_sativa.japonica.IRGSP.assoc		diff \| blob \| history
go-associations/go_iprscan_Phaseolus_vulgaris.assoc		diff \| blob \| history
go-associations/go_iprscan_Phoenix_dactylifera.assoc		diff \| blob \| history
go-associations/go_iprscan_Phyllostachys_heterocycla.assoc		diff \| blob \| history
go-associations/go_iprscan_Physcomitrella_patens.assoc		diff \| blob \| history
go-associations/go_iprscan_Picea_abies.assoc		diff \| blob \| history
go-associations/go_iprscan_Pinus_taeda.assoc		diff \| blob \| history
go-associations/go_iprscan_Populus_trichocarpa.assoc		diff \| blob \| history
go-associations/go_iprscan_Prunus_persica.assoc		diff \| blob \| history
go-associations/go_iprscan_Ricinus_communis.assoc		diff \| blob \| history
go-associations/go_iprscan_Salvinia_cucullata.assoc		diff \| blob \| history
go-associations/go_iprscan_Selaginella_moellendorffii.assoc		diff \| blob \| history
go-associations/go_iprscan_Setaria_italica.assoc		diff \| blob \| history
go-associations/go_iprscan_Solanum_lycopersicum.assoc		diff \| blob \| history
go-associations/go_iprscan_Solanum_tuberosum.assoc		diff \| blob \| history
go-associations/go_iprscan_Sorghum_bicolor.assoc		diff \| blob \| history
go-associations/go_iprscan_Synechocystis_sp.pcc.6803.assoc		diff \| blob \| history
go-associations/go_iprscan_Theobroma_cacao.assoc		diff \| blob \| history
go-associations/go_iprscan_Trichodesmium_erythraeum.assoc		diff \| blob \| history
go-associations/go_iprscan_Triticum_aestivum.assoc		diff \| blob \| history
go-associations/go_iprscan_Triticum_dicoccoides.assoc		diff \| blob \| history
go-associations/go_iprscan_Triticum_monococcum.DV92.assoc		diff \| blob \| history
go-associations/go_iprscan_Triticum_monococcum.G3116.assoc		diff \| blob \| history
go-associations/go_iprscan_Triticum_turgidum.assoc		diff \| blob \| history
go-associations/go_iprscan_Triticum_urartu.assoc		diff \| blob \| history
go-associations/go_iprscan_Utricularia_gibba.assoc		diff \| blob \| history
go-associations/go_iprscan_Vigna_radiata.assoc		diff \| blob \| history
go-associations/go_iprscan_Vitis_vinifera.assoc		diff \| blob \| history
go-associations/go_iprscan_Zea_mays.assoc		diff \| blob \| history
go-associations/go_iprscan_Zoysia_japonica.Nagirizaki.assoc		diff \| blob \| history
go-associations/go_iprscan_Zoysia_matrella.Wakaba.assoc		diff \| blob \| history
go-associations/go_iprscan_Zoysia_pacifica.Zanpa.assoc		diff \| blob \| history
go-associations/go_jaiswallab/Eucalyptus_all_merged_GAF_5515_removed.assoc		diff \| blob \| history
go-associations/go_jaiswallab/Fragaria_all_GO.assoc		diff \| blob \| history
go-associations/go_jaiswallab/Poplar_go_5515_removed.assoc		diff \| blob \| history
go-associations/go_jaiswallab/Vitis_go_5515_removed.assoc		diff \| blob \| history
go-associations/go_jaiswallab/go_arabidopsis_7_14_11_TAIR_5515_removed.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Aegilops_tauschii.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Amborella_trichopoda.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Arabidopsis_halleri.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Arabidopsis_lyrata.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Arachis_duranensis.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Arachis_ipaensis.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Asparagus_officinalis.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Brachypodium_distachyon.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Brachypodium_sylvaticum.Greece.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Brachypodium_sylvaticum.Spain.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Brassica_oleracea.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Brassica_rapa.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Cajanus_cajan.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Cannabis_sativa.CRBRx.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Cannabis_sativa.Purple.Kush.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Capsella_rubella.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Capsicum_annuum.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Carica_papaya.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Chlamydomonas_reinhardtii.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Chondrus_crispus.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Cicer_arietinum.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Citrullus_lanatus.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Citrus_clementina.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Citrus_sinensis.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Coffea_canephora.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Corchorus_capsularis.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Corchorus_olitorius.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Cornus_florida.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Cucumis_sativus.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Durio_zibethinus.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Ectocarpus_siliculosus.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Erythranthe_guttata.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Eucalyptus_grandis.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Fragaria_vesca.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Glycine_max.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Gossypium_raimondii.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Hordeum_vulgare.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Humulus_lupulus.haplotig.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Humulus_lupulus.primary.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Jatropha_curcas.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Leersia_perrieri.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Linum_usitatissimum.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Malus_domestica.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Manihot_esculenta.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Medicago_truncatula.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Mentha_longifolia.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Musa_acuminata.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Nelumbo_nucifera.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Nicotiana_attenuata.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Nostoc_punctiforme.pcc.73102.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Ocimum_tenuiflorum.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_barthii.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_brachyantha.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_glaberrima.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_glumipatula.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_granulata.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_longistaminata.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_meridionalis.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_minuta.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_nivara.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_officinalis.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_punctata.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_rufipogon.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_sativa.AUS.N22.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_sativa.AUS.kasalath.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_sativa.indica.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Oryza_sativa.japonica.IRGSP.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Phaseolus_vulgaris.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Phoenix_dactylifera.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Phyllostachys_heterocycla.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Physcomitrella_patens.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Picea_abies.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Pinus_taeda.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Populus_trichocarpa.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Prunus_persica.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Ricinus_communis.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Salvinia_cucullata.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Selaginella_moellendorffii.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Setaria_italica.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Solanum_lycopersicum.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Solanum_tuberosum.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Sorghum_bicolor.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Synechocystis_sp.pcc.6803.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Theobroma_cacao.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Trichodesmium_erythraeum.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Triticum_aestivum.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Triticum_dicoccoides.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Triticum_monococcum.DV92.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Triticum_monococcum.G3116.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Triticum_turgidum.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Triticum_urartu.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Utricularia_gibba.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Vigna_radiata.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Vitis_vinifera.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Zea_mays.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Zoysia_japonica.Nagirizaki.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Zoysia_matrella.Wakaba.assoc		diff \| blob \| history
go-associations/go_ortholog_gene_Zoysia_pacifica.Zanpa.assoc		diff \| blob \| history

Planteome associations

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