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Cleanup...
authorpreecej <preecej@localhost>
Wed, 26 Oct 2011 21:45:24 +0000 (21:45 +0000)
committerpreecej <preecej@localhost>
Wed, 26 Oct 2011 21:45:24 +0000 (21:45 +0000)
commit82d8f9ea49d7345d39dc3d89c626691940ca7b53
treeff00eb4c8f64f2f3c35a3d1f445197b411b3207c
parent62c4df8773feddd9d7240071cd5cd5843df24ee3
Cleanup...

svn path=/; revision=199
254 files changed:
Personnel/preecej/.gitignore [deleted file]
Personnel/preecej/perl_singletons/aracyc_to_reactome_conversion/ara_rice_exclusive_sets.pl [new file with mode: 0644]
Personnel/preecej/perl_singletons/aracyc_to_reactome_conversion/convert_bad_pub_authors_to_years.pl [new file with mode: 0644]
Personnel/preecej/perl_singletons/aracyc_to_reactome_conversion/convert_bad_step_interaction_datatypes.pl [new file with mode: 0644]
Personnel/preecej/perl_singletons/pathway_gene_swapper.pl [new file with mode: 0644]
Personnel/preecej/perl_singletons/reactome_chebi_mapping/reactome_chebi_mapping.pl [new file with mode: 0755]
Personnel/preecej/perl_singletons/zea_Maize_PO_CoGe_name_swap.pl [new file with mode: 0644]
Personnel/preecej/php_singletons/PO_web_service.php [new file with mode: 0644]
Personnel/preecej/php_singletons/cmd_line_test.php [new file with mode: 0644]
Personnel/preecej/sql_scripts/Reactome_EC_number_reaction_name_mapping.sql [new file with mode: 0644]
planteome/.gitignore [deleted file]
planteome/paw/content_pages/Main_Page.wiki [new file with mode: 0644]
planteome/paw/content_pages/Reference:Plant_Taxa.wiki [new file with mode: 0644]
planteome/paw/extensions/DataTransfer_PS/COPYING [new file with mode: 0644]
planteome/paw/extensions/DataTransfer_PS/DataTransfer.php [new file with mode: 0644]
planteome/paw/extensions/DataTransfer_PS/INSTALL [new file with mode: 0644]
planteome/paw/extensions/DataTransfer_PS/README [new file with mode: 0644]
planteome/paw/extensions/DataTransfer_PS/data_transfer_0.3.8.tar.gz [new file with mode: 0644]
planteome/paw/extensions/DataTransfer_PS/includes/DT_ImportJob.php [new file with mode: 0644]
planteome/paw/extensions/DataTransfer_PS/includes/DT_Utils.php [new file with mode: 0644]
planteome/paw/extensions/DataTransfer_PS/includes/DT_XMLParser.php [new file with mode: 0644]
planteome/paw/extensions/DataTransfer_PS/languages/DT_Aliases.php [new file with mode: 0644]
planteome/paw/extensions/DataTransfer_PS/languages/DT_Language.php [new file with mode: 0644]
planteome/paw/extensions/DataTransfer_PS/languages/DT_LanguageEn.php [new file with mode: 0644]
planteome/paw/extensions/DataTransfer_PS/languages/DT_Messages.php [new file with mode: 0644]
planteome/paw/extensions/DataTransfer_PS/specials/DT_ImportCSV.php [new file with mode: 0644]
planteome/paw/extensions/DataTransfer_PS/specials/DT_ImportXML.php [new file with mode: 0644]
planteome/paw/extensions/DataTransfer_PS/specials/DT_ViewXML.php [new file with mode: 0644]
planteome/paw/forms/Annotation.wiki [new file with mode: 0644]
planteome/paw/forms/External_References.wiki [new file with mode: 0644]
planteome/paw/forms/Gene_Synonyms.wiki [new file with mode: 0644]
planteome/paw/forms/Ontological_References.wiki [new file with mode: 0644]
planteome/paw/forms/Provenance.wiki [new file with mode: 0644]
planteome/paw/forms/Publication.wiki [new file with mode: 0644]
planteome/paw/forms/Reference_Publication.wiki [new file with mode: 0644]
planteome/paw/forms/Sequences.wiki [new file with mode: 0644]
planteome/paw/forms/Source.wiki [new file with mode: 0644]
planteome/paw/local_settings/dev.LocalSettings.php [new file with mode: 0644]
planteome/paw/local_settings/proto.LocalSettings.php [new file with mode: 0644]
planteome/paw/local_settings/test.LocalSettings.php [new file with mode: 0644]
planteome/paw/local_settings/test.SemanticBundleSettings.php [new file with mode: 0644]
planteome/paw/paw_TransformForImport.pl [new file with mode: 0644]
planteome/paw/prototyping/NCBI_eDocSummary.php [new file with mode: 0644]
planteome/paw/prototyping/TermSearch_JSON.php [new file with mode: 0644]
planteome/paw/prototyping/remote_autocomplete.php [new file with mode: 0755]
planteome/paw/prototyping/sample_species.xml [new file with mode: 0644]
planteome/paw/prototyping/simple_forms_ajax.php [new file with mode: 0644]
planteome/paw/services/NCBI_eDocSummary.php [new file with mode: 0644]
planteome/paw/services/dev.TermSearch_JSON.php [new file with mode: 0644]
planteome/paw/services/test.TermSearch_JSON.php [new file with mode: 0644]
planteome/paw/skins/Planteome.deps.php [new file with mode: 0644]
planteome/paw/skins/Planteome.php [new file with mode: 0644]
planteome/paw/skins/planteome/Makefile [new file with mode: 0644]
planteome/paw/skins/planteome/csshover.htc [new file with mode: 0644]
planteome/paw/skins/planteome/cssjanus/COPYING [new file with mode: 0644]
planteome/paw/skins/planteome/cssjanus/LICENSE [new file with mode: 0644]
planteome/paw/skins/planteome/cssjanus/README [new file with mode: 0644]
planteome/paw/skins/planteome/cssjanus/cssjanus.py [new file with mode: 0755]
planteome/paw/skins/planteome/cssjanus/csslex.py [new file with mode: 0755]
planteome/paw/skins/planteome/experiments/babaco-colors-a.css [new file with mode: 0644]
planteome/paw/skins/planteome/experiments/babaco-colors-b.css [new file with mode: 0644]
planteome/paw/skins/planteome/experiments/babaco-colors-c.css [new file with mode: 0644]
planteome/paw/skins/planteome/experiments/images/new-border.png [new file with mode: 0644]
planteome/paw/skins/planteome/experiments/images/new-portal-break-ltr.png [new file with mode: 0644]
planteome/paw/skins/planteome/experiments/images/new-portal-break-rtl.png [new file with mode: 0644]
planteome/paw/skins/planteome/experiments/images/page-base-fade.png [new file with mode: 0644]
planteome/paw/skins/planteome/experiments/images/page-base-updated.png [new file with mode: 0644]
planteome/paw/skins/planteome/experiments/images/tab-active-first.png [new file with mode: 0644]
planteome/paw/skins/planteome/experiments/images/tab-active-last.png [new file with mode: 0644]
planteome/paw/skins/planteome/experiments/images/tab-fade.png [new file with mode: 0644]
planteome/paw/skins/planteome/experiments/images/tab-first.png [new file with mode: 0644]
planteome/paw/skins/planteome/experiments/images/tab-last.png [new file with mode: 0644]
planteome/paw/skins/planteome/experiments/images/tab-new-fade.png [new file with mode: 0644]
planteome/paw/skins/planteome/experiments/new-tabs.css [new file with mode: 0644]
planteome/paw/skins/planteome/images/arrow-down-icon.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/audio-icon.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/border.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/bullet-icon.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/document-icon.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/edit-icon.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/external-link-ltr-icon.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/external-link-rtl-icon.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/file-icon.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/link-icon.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/lock-icon.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/magnify-clip.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/mail-icon.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/news-icon.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/page-base.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/page-fade.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/portal-break-ltr.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/portal-break-rtl.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/portal-break.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/preferences-base.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/preferences-break.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/preferences-edge.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/preferences-fade.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/search-fade.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/search-ltr.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/search-rtl.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/tab-break.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/tab-current-fade.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/tab-normal-fade.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/talk-icon.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/user-icon.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/video-icon.png [new file with mode: 0644]
planteome/paw/skins/planteome/images/watch-icon-loading.gif [new file with mode: 0644]
planteome/paw/skins/planteome/images/watch-icons.png [new file with mode: 0644]
planteome/paw/skins/planteome/main-ltr.css [new file with mode: 0644]
planteome/paw/skins/planteome/main-rtl.css [new file with mode: 0644]
planteome/paw/skins/planteome/wiki-indexed.png [new file with mode: 0644]
planteome/paw/skins/planteome/wiki.png [new file with mode: 0644]
planteome/paw/templates/Annotation.wiki [new file with mode: 0644]
planteome/paw/templates/External_Reference_Repeater.wiki [new file with mode: 0644]
planteome/paw/templates/External_References.wiki [new file with mode: 0644]
planteome/paw/templates/Gene_Ontology_Reference_Repeater.wiki [new file with mode: 0644]
planteome/paw/templates/Gene_Synonym_Repeater.wiki [new file with mode: 0644]
planteome/paw/templates/Gene_Synonyms.wiki [new file with mode: 0644]
planteome/paw/templates/Ontological_Reference_Repeater.wiki [new file with mode: 0644]
planteome/paw/templates/Ontological_References.wiki [new file with mode: 0644]
planteome/paw/templates/Plant_Ontology_Reference_Repeater.wiki [new file with mode: 0644]
planteome/paw/templates/Provenance.wiki [new file with mode: 0644]
planteome/paw/templates/Provenance_Repeater.wiki [new file with mode: 0644]
planteome/paw/templates/Publication.wiki [new file with mode: 0644]
planteome/paw/templates/Reference_Publication.wiki [new file with mode: 0644]
planteome/paw/templates/Sequence_Repeater.wiki [new file with mode: 0644]
planteome/paw/templates/Sequences.wiki [new file with mode: 0644]
planteome/paw/templates/Source.wiki [new file with mode: 0644]
preecej/.gitignore [new file with mode: 0644]
preecej/perl_singletons/aracyc_to_reactome_conversion/ara_rice_exclusive_sets.pl [deleted file]
preecej/perl_singletons/aracyc_to_reactome_conversion/convert_bad_pub_authors_to_years.pl [deleted file]
preecej/perl_singletons/aracyc_to_reactome_conversion/convert_bad_step_interaction_datatypes.pl [deleted file]
preecej/perl_singletons/pathway_gene_swapper.pl [deleted file]
preecej/perl_singletons/reactome_chebi_mapping/reactome_chebi_mapping.pl [deleted file]
preecej/perl_singletons/zea_Maize_PO_CoGe_name_swap.pl [deleted file]
preecej/php_singletons/PO_web_service.php [deleted file]
preecej/php_singletons/cmd_line_test.php [deleted file]
preecej/semantic_wiki/content_pages/Main_Page.wiki [deleted file]
preecej/semantic_wiki/content_pages/Reference:Plant_Taxa.wiki [deleted file]
preecej/semantic_wiki/extensions/DataTransfer_PS/COPYING [deleted file]
preecej/semantic_wiki/extensions/DataTransfer_PS/DataTransfer.php [deleted file]
preecej/semantic_wiki/extensions/DataTransfer_PS/INSTALL [deleted file]
preecej/semantic_wiki/extensions/DataTransfer_PS/README [deleted file]
preecej/semantic_wiki/extensions/DataTransfer_PS/data_transfer_0.3.8.tar.gz [deleted file]
preecej/semantic_wiki/extensions/DataTransfer_PS/includes/DT_ImportJob.php [deleted file]
preecej/semantic_wiki/extensions/DataTransfer_PS/includes/DT_Utils.php [deleted file]
preecej/semantic_wiki/extensions/DataTransfer_PS/includes/DT_XMLParser.php [deleted file]
preecej/semantic_wiki/extensions/DataTransfer_PS/languages/DT_Aliases.php [deleted file]
preecej/semantic_wiki/extensions/DataTransfer_PS/languages/DT_Language.php [deleted file]
preecej/semantic_wiki/extensions/DataTransfer_PS/languages/DT_LanguageEn.php [deleted file]
preecej/semantic_wiki/extensions/DataTransfer_PS/languages/DT_Messages.php [deleted file]
preecej/semantic_wiki/extensions/DataTransfer_PS/specials/DT_ImportCSV.php [deleted file]
preecej/semantic_wiki/extensions/DataTransfer_PS/specials/DT_ImportXML.php [deleted file]
preecej/semantic_wiki/extensions/DataTransfer_PS/specials/DT_ViewXML.php [deleted file]
preecej/semantic_wiki/forms/Annotation.wiki [deleted file]
preecej/semantic_wiki/forms/External_References.wiki [deleted file]
preecej/semantic_wiki/forms/Gene_Synonyms.wiki [deleted file]
preecej/semantic_wiki/forms/Ontological_References.wiki [deleted file]
preecej/semantic_wiki/forms/Provenance.wiki [deleted file]
preecej/semantic_wiki/forms/Publication.wiki [deleted file]
preecej/semantic_wiki/forms/Reference_Publication.wiki [deleted file]
preecej/semantic_wiki/forms/Sequences.wiki [deleted file]
preecej/semantic_wiki/forms/Source.wiki [deleted file]
preecej/semantic_wiki/local_settings/dev.LocalSettings.php [deleted file]
preecej/semantic_wiki/local_settings/proto.LocalSettings.php [deleted file]
preecej/semantic_wiki/local_settings/test.LocalSettings.php [deleted file]
preecej/semantic_wiki/local_settings/test.SemanticBundleSettings.php [deleted file]
preecej/semantic_wiki/paw_TransformForImport.pl [deleted file]
preecej/semantic_wiki/prototyping/NCBI_eDocSummary.php [deleted file]
preecej/semantic_wiki/prototyping/TermSearch_JSON.php [deleted file]
preecej/semantic_wiki/prototyping/remote_autocomplete.php [deleted file]
preecej/semantic_wiki/prototyping/sample_species.xml [deleted file]
preecej/semantic_wiki/prototyping/simple_forms_ajax.php [deleted file]
preecej/semantic_wiki/services/NCBI_eDocSummary.php [deleted file]
preecej/semantic_wiki/services/dev.TermSearch_JSON.php [deleted file]
preecej/semantic_wiki/services/test.TermSearch_JSON.php [deleted file]
preecej/semantic_wiki/skins/Planteome.deps.php [deleted file]
preecej/semantic_wiki/skins/Planteome.php [deleted file]
preecej/semantic_wiki/skins/planteome/Makefile [deleted file]
preecej/semantic_wiki/skins/planteome/csshover.htc [deleted file]
preecej/semantic_wiki/skins/planteome/cssjanus/COPYING [deleted file]
preecej/semantic_wiki/skins/planteome/cssjanus/LICENSE [deleted file]
preecej/semantic_wiki/skins/planteome/cssjanus/README [deleted file]
preecej/semantic_wiki/skins/planteome/cssjanus/cssjanus.py [deleted file]
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preecej/semantic_wiki/skins/planteome/experiments/babaco-colors-a.css [deleted file]
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preecej/semantic_wiki/templates/Gene_Ontology_Reference_Repeater.wiki [deleted file]
preecej/semantic_wiki/templates/Gene_Synonym_Repeater.wiki [deleted file]
preecej/semantic_wiki/templates/Gene_Synonyms.wiki [deleted file]
preecej/semantic_wiki/templates/Ontological_Reference_Repeater.wiki [deleted file]
preecej/semantic_wiki/templates/Ontological_References.wiki [deleted file]
preecej/semantic_wiki/templates/Plant_Ontology_Reference_Repeater.wiki [deleted file]
preecej/semantic_wiki/templates/Provenance.wiki [deleted file]
preecej/semantic_wiki/templates/Provenance_Repeater.wiki [deleted file]
preecej/semantic_wiki/templates/Publication.wiki [deleted file]
preecej/semantic_wiki/templates/Reference_Publication.wiki [deleted file]
preecej/semantic_wiki/templates/Sequence_Repeater.wiki [deleted file]
preecej/semantic_wiki/templates/Sequences.wiki [deleted file]
preecej/semantic_wiki/templates/Source.wiki [deleted file]