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Fixed a few gene names
authorcooperl <cooperl@localhost>
Tue, 19 Nov 2024 17:18:33 +0000 (17:18 +0000)
committercooperl <cooperl@localhost>
Tue, 19 Nov 2024 17:18:33 +0000 (17:18 +0000)
svn path=/; revision=1129

po-associations/po_anatomy_gene_oryza_poc.assoc patch | blob | history
po-associations/po_gene_Oryza_Zhang_2021.assoc patch | blob | history

diff --git a/po-associations/po_anatomy_gene_oryza_poc.assoc b/po-associations/po_anatomy_gene_oryza_poc.assoc
index 20f7a59cf18b2a9f136c949486f7a4c5be2a5133..4fc660a8f86c2e9491c1f0be2c15c577db4fdc59 100644 (file)
--- a/po-associations/po_anatomy_gene_oryza_poc.assoc
+++ b/po-associations/po_anatomy_gene_oryza_poc.assoc
@@ -18153,7 +18153,7 @@ RAP-DB  Os11g0455800    Os11g0455800            PO:0009047      DOI:10.1371/journal.pone.0026162        IE
 RAP-DB Os11g0457300    Os11g0457300            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Flavonol 3-O-glucosyltransferase (EC 24191) (UDP-glucose flavonoid 3-O-glucosyltransferase) (Anthocyanin rhamnosyl transferase) UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed      gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
 RAP-DB Os11g0459300    Os11g0459300            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Expressed gene  expressed protein       gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
 RAP-DB Os11g0459600    Os11g0459600            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Non-protein coding transcript, uncharacterized transcript       retrotransposon protein, putative, unclassified gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
-RAP-DB Os11g0488400    Os11g0488400            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Expressed gene  expressed protein       gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
+RAP-DB Os11g0488400    Os11g0488400            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Conserved hypothetical protein          gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
 RAP-DB Os11g0490600    Os11g0490600            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Hypothetical protein    expressed protein       gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
 RAP-DB Os11g0503400    Os11g0503400            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       ARM repeat fold domain containing protein       expressed protein       gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
 RAP-DB Os11g0522000    Os11g0522000            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       XY4 protein (Fragment)  phosphoglycerate mutase, putative, expressed    gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
@@ -29455,7 +29455,7 @@ RAP-DB  Os11g0257200    Os11g0257200            PO:0009005      DOI:10.1371/journal.pone.0026162        IE
 RAP-DB Os11g0258500    Os11g0258500            PO:0009005      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Disease resistance protein family protein       RGH1A, putative gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007134)|participates_in(PO:0007130) 
 RAP-DB Os11g0265800    Os11g0265800            PO:0009005      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       2OG-Fe(II) oxygenase domain containing protein  Expressed gene  gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007134)|participates_in(PO:0007130) 
 RAP-DB Os11g0266500    Os11g0266500            PO:0009005      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Disease resistance protein family protein       mal, putative, expressed        gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007134)|participates_in(PO:0007130) 
-RAP-DB Os11g0269900    Os11g0269900            PO:0009005      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Enoyl-CoA hydratase/isomerase domain containing protein carnitine racemase like protein, putative, expressed    gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007134)|participates_in(PO:0007130) 
+RAP-DB Os11g0269900    Os11g0269900            PO:0009005      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Hypothetical conserved gene             gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007134)|participates_in(PO:0007130) 
 RAP-DB Os11g0270000    Os11g0270000            PO:0009005      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Expressed gene  carnitine racemase like protein, putative, expressed    gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007134)|participates_in(PO:0007130) 
 RAP-DB Os11g0270500    Os11g0270500            PO:0009005      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Disease resistance protein family protein       NB-ARC domain containing protein, expressed     gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007134)|participates_in(PO:0007130) 
 RAP-DB Os11g0274100    Os11g0274100            PO:0009005      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Protein kinase domain containing protein        Expressed gene  gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007134)|participates_in(PO:0007130) 
diff --git a/po-associations/po_gene_Oryza_Zhang_2021.assoc b/po-associations/po_gene_Oryza_Zhang_2021.assoc
index 1aae2e5f9cd1c6a7d7e901a928b07e062fe48df3..accf0b10cea56d0a2f365bd54e84cce316f495cc 100644 (file)
--- a/po-associations/po_gene_Oryza_Zhang_2021.assoc
+++ b/po-associations/po_gene_Oryza_Zhang_2021.assoc
@@ -2205,7 +2205,7 @@ RAP-DB    Os10g0536100    OsMADS56                PO:0006203      DOI:10.1038/s41467-021-22352-4  HEP             A       M
 RAP-DB Os10g0547500    OsLsi3          PO:0006203      DOI:10.1038/s41467-021-22352-4  HEP             A       LOW SILICON RICE 3              gene    NCBITaxon:39947 20241105        PO:Laurel_Cooper                
 RAP-DB Os11g0149400    OsPSK2          PO:0006203      DOI:10.1038/s41467-021-22352-4  HEP             A       phytosulfokine 2                gene    NCBITaxon:39947 20241105        PO:Laurel_Cooper                
 RAP-DB Os11g0177400    OsABCG27                PO:0006203      DOI:10.1038/s41467-021-22352-4  HEP             A       ABC transporter superfamily ABCG subgroup member 27             gene    NCBITaxon:39947 20241105        PO:Laurel_Cooper                
-RAP-DB Os11g0180000    Os11g0180000            PO:0006203      DOI:10.1038/s41467-021-22352-4  HEP             A       DIR domain protein 41           gene    NCBITaxon:39947 20241105        PO:Laurel_Cooper                
+RAP-DB Os11g0180000    OsDIR41         PO:0006203      DOI:10.1038/s41467-021-22352-4  HEP             A       DIR domain protein 41           gene    NCBITaxon:39947 20241105        PO:Laurel_Cooper                
 RAP-DB Os11g0291450    Os11g0291450            PO:0006203      DOI:10.1038/s41467-021-22352-4  HEP             A       Non-protein coding transcript           gene    NCBITaxon:39947 20241105        PO:Laurel_Cooper                
 RAP-DB Os11g0488600    Os11g0488600            PO:0006203      DOI:10.1038/s41467-021-22352-4  HEP             A       Conserved hypothetical protein          gene    NCBITaxon:39947 20241105        PO:Laurel_Cooper                
 RAP-DB Os11g0508600    XA41            PO:0006203      DOI:10.1038/s41467-021-22352-4  HEP             A       XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 41             gene    NCBITaxon:39947 20241105        PO:Laurel_Cooper                
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