Refreshed versions of LocalSettings.php and NCBI_eDocSummary.php

svn path=/; revision=94

diff --git a/preecej/semantic_wiki/LocalSettings.php b/preecej/semantic_wiki/LocalSettings.php
index 7da811b54133ad4d7a2f18a8b41742f1620412cc..3c02af72512de4e91c0c2e5a2dd6c5a35615bff1 100644 (file)
--- a/preecej/semantic_wiki/LocalSettings.php
+++ b/preecej/semantic_wiki/LocalSettings.php
@@ -29,25 +29,26 @@ if ( $wgCommandLineMode ) {
                die( "This script must be run from the command line\n" );
        }
 }
-
 ## Uncomment this to disable output compression
 # $wgDisableOutputCompression = true;
 
-$wgSitename         = "AnnoWiki";
+$wgSitename         = "PlantSemantics";
 
 ## The URL base path to the directory containing the wiki;
 ## defaults for all runtime URL paths are based off of this.
 ## For more information on customizing the URLs please see:
 ## http://www.mediawiki.org/wiki/Manual:Short_URL
-$wgScriptPath       = "/AnnoWiki";
-$wgScriptExtension  = ".php";
+$wgScriptPath       = "/w";
+$wgArticlePath      = "/wiki/$1";
+$wgUsePathInfo      = true;
+$wgScriptExtension  = ".php5";
 
 ## The relative URL path to the skins directory
 $wgStylePath        = "$wgScriptPath/skins";
 
 ## The relative URL path to the logo.  Make sure you change this from the default,
 ## or else you'll overwrite your logo when you upgrade!
-$wgLogo             = "$wgStylePath/common/images/A1_sterileflowers_wiki_icon.jpg";
+$wgLogo             = "$wgStylePath/common/images/wiki_logo_proto.png";
 
 ## UPO means: this is also a user preference option
 
@@ -63,10 +64,11 @@ $wgEmailAuthentication = true;
 
 ## Database settings
 $wgDBtype           = "mysql";
-$wgDBserver         = "floret.cgrb.oregonstate.local";
-$wgDBname           = "annowiki";
-$wgDBuser           = "annowikiuser";
-$wgDBpassword       = "annowikiuser-pw";
+$wgDBserver         = "localhost";
+$wgDBname           = "PlantSemantics";
+$wgDBuser           = "ps_wiki_db";
+$wgDBpassword       = "1yCoP3r5icuM";
+$wgJobRunRate       = 1;
 
 # MySQL specific settings
 $wgDBprefix         = "";
@@ -111,7 +113,7 @@ $wgLocalInterwiki   = strtolower( $wgSitename );
 
 $wgLanguageCode = "en";
 
-$wgSecretKey = "469aad58c7cc5ab0ec223dbf1316d16a6ded21cfa01f9e23d6ef22dee92a3224";
+$wgSecretKey = "2030c0cc408640a1809ec82a9fb16e660d9988a63aeb77871a94c94a5f2d2c56";
 
 ## Default skin: you can change the default skin. Use the internal symbolic
 ## names, ie 'vector', 'monobook':
@@ -120,36 +122,46 @@ $wgDefaultSkin = 'monobook';
 ## For attaching licensing metadata to pages, and displaying an
 ## appropriate copyright notice / icon. GNU Free Documentation
 ## License and Creative Commons licenses are supported so far.
-# $wgEnableCreativeCommonsRdf = true;
+$wgEnableCreativeCommonsRdf = true;
 $wgRightsPage = ""; # Set to the title of a wiki page that describes your license/copyright
-$wgRightsUrl = "";
-$wgRightsText = "";
-$wgRightsIcon = "";
-# $wgRightsCode = ""; # Not yet used
+$wgRightsUrl = "http://creativecommons.org/licenses/by-nc-sa/3.0/";
+$wgRightsText = "Attribution-NonCommercial-ShareAlike 3.0 Unported";
+$wgRightsIcon = "http://i.creativecommons.org/l/by-nc-sa/3.0/88x31.png";
+# $wgRightsCode = "[license_code]"; # Not yet used
 
 $wgDiff3 = "/usr/bin/diff3";
 
-# BEGIN 10/26/10: Justin Preece - Semantic MediaWiki and related extensions
-# (moved from top of file to address premature reference to $wgScriptPath)
 
-# added for Semantic public notification value recommended by Semantic MediaWiki
-$wgServerName = "palea.cgrb.oregonstate.edu";
+# BEGIN 04/04/11: Justin Preece - Add'l Extensions
+$wgUseAjax = true;
+include("$IP/extensions/SimpleForms/SimpleForms.php");
+require_once( "$IP/extensions/ParserFunctions/ParserFunctions.php" );
+$wgPFEnableStringFunctions = true;
+
+# END 04/04/11: Justin Preece - Add'l Extensions
+
+# BEGIN 02/22/11: Justin Preece - Semantic Bundle (SMW and other extensions)
+# (moved from top of file to address premature reference to $wgScriptPath)
 
-# Semantic MediaWiki extension
-include_once("$IP/extensions/SemanticMediaWiki/SemanticMediaWiki.php");
-enableSemantics($wgServerName);
+require_once( "$IP/extensions/semantic-bundle/SemanticBundleSettings.php" );
+require_once( "$IP/extensions/semantic-bundle/SemanticBundle.php" );
 
-# Semantic Forms extension
-include_once("$IP/extensions/SemanticForms/SemanticForms.php");
 $sfgAutocompletionURLs['remote_species'] = 'http://palea.cgrb.oregonstate.edu/AnnoWiki/prototyping/remote_autocomplete.php?q=<substr>';
+$sfgAutocompleteOnAllChars = false;
 
-# Data Transfer extension
-include_once("$IP/extensions/DataTransfer/DataTransfer.php");
+# END 02/22/11: Justin Preece - Semantic Bundle (SMW and other extensions)
 
-# External Data extension
-include_once("$IP/extensions/ExternalData/ExternalData.php");
+/** Allow client-side caching of pages */
+$wgCachePages       = false;
+ 
+/**
+       *  * Set this to current time to invalidate all prior cached pages. Affects both
+       *   * client- and server-side caching.
+       *    * You can get the current date on your server by using the command:
+       *     *   date +%Y%m%d%H%M%S
+       *      */
+$wgCacheEpoch = 'date +%Y%m%d%H%M%S';
 
-# END 10/26/10: Justin Preece - Semantic MediaWiki and related extensions
 
 # When you make changes to this configuration file, this will make
 # sure that cached pages are cleared.