--- /dev/null
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+ <classpathentry kind="src" path=""/>
+ <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
+ <classpathentry exported="true" sourcepath="src.zip" kind="lib" path="swt.jar">
+ <attributes>
+ <attribute value="http://help.eclipse.org/stable/nftopic/org.eclipse.platform.doc.isv/reference/api/" name="javadoc_location"/>
+ <attribute value="org.eclipse.swt" name="org.eclipse.jdt.launching.CLASSPATH_ATTR_LIBRARY_PATH_ENTRY"/>
+ </attributes>
+ </classpathentry>
+ <classpathentry kind="output" path=""/>
+</classpath>
--- /dev/null
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+ <name>org.eclipse.swt</name>
+ <comment></comment>
+ <projects>
+ </projects>
+ <buildSpec>
+ <buildCommand>
+ <name>org.eclipse.jdt.core.javabuilder</name>
+ <arguments>
+ </arguments>
+ </buildCommand>
+ </buildSpec>
+ <natures>
+ <nature>org.eclipse.jdt.core.javanature</nature>
+ </natures>
+</projectDescription>
\ No newline at end of file
--- /dev/null
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1"/>
+<title>About</title>
+</head>
+<body lang="EN-US">
+<h2>About This Content</h2>
+
+<p>August 17, 2006</p>
+<h3>License</h3>
+
+<p>The Eclipse Foundation makes available all content in this plug-in ("Content"). Unless otherwise
+indicated below, the Content is provided to you under the terms and conditions of the
+Eclipse Public License Version 1.0 ("EPL"). A copy of the EPL is available
+at <a href="http://www.eclipse.org/legal/epl-v10.html">http://www.eclipse.org/legal/epl-v10.html</a>.
+For purposes of the EPL, "Program" will mean the Content.</p>
+
+<p>If you did not receive this Content directly from the Eclipse Foundation, the Content is
+being redistributed by another party ("Redistributor") and different terms and conditions may
+apply to your use of any object code in the Content. Check the Redistributor's license that was
+provided with the Content. If no such license exists, contact the Redistributor. Unless otherwise
+indicated below, the terms and conditions of the EPL still apply to any source code in the Content
+and such source code may be obtained at <a href="http://www.eclipse.org">http://www.eclipse.org</a>.</p>
+
+<h3>Third Party Content</h3>
+
+<p>The Content includes items that have been sourced from third parties as set out below. If you
+did not receive this Content directly from the Eclipse Foundation, the following is provided
+for informational purposes only, and you should look to the Redistributor’s license for
+terms and conditions of use.</p>
+
+<h4>Mozilla Binding</h4>
+
+<p>The "Mozilla Binding" is a binding to the Mozilla API. The Content may include any or all of the following files:</p>
+
+<p>The following files in the plug-in JAR shall be defined as the native code portion of the Mozilla Binding:</p>
+<ul>
+ <li>swt-xulrunner-win32-xxxx.so (where "xxxx" is the version number)</li>
+ <li>swt-xpcominit-win32-xxxx.so (where "xxxx" is the version number)</li>
+</ul>
+
+<p>The following files in both the plug-in JAR and the src.zip shall be defined respectively as the bytecode and source code portions of the Mozilla Binding:</p>
+<ul>
+ <li>The contents of the directory org/eclipse/swt/internal/mozilla (but not including any sub-directories)</li>
+</ul>
+
+<p>The Mozilla Binding contains portions of Mozilla ("Mozilla"). Mozilla is made available by Mozilla.org. Use of Mozilla is governed by the terms and
+conditions of the Mozilla Public License Version 1.1 ("MPL"). A copy of the MPL is provided with the Content (<a href="about_files/mpl-v11.txt" target="_blank">mpl-v11.txt</a>) and is also available at
+<a href="http://www.mozilla.org/MPL/MPL-1.1.html" target="_blank">http://www.mozilla.org/MPL/MPL-1.1.html</a>.</p>
+
+<h4>Independent JPEG Group's JPEG software release 6b</h4>
+
+<p>This software is based in part on the work of the Independent JPEG Group's JPEG software release 6b ("LIBJPEG").
+LIBJPEG was used to implement the decoding of JPEG format files in Java (TM). The Content does NOT include any portion of the LIBJPEG file ansi2knr.c.</p>
+
+<p>Your use of LIBJPEG is subject to the terms and conditions located in the <a href="about_files/IJG_README">about_files/IJG_README</a> file which is included
+with the Content.</p>
+
+<p>The IJG's website is located at <a href="http://ijg.org/" target="_blank">http://ijg.org</a>.</p>
+
+<p>The class org.eclipse.swt.internal.image.JPEGFileFormat is based on following files from LIBJPEG:</p>
+
+<ul>
+ <li>cderror.h</li>
+ <li>cdjpeg.h</li>
+ <li>jchuff.h</li>
+ <li>jdcolor.c</li>
+ <li>jdct.h</li>
+ <li>jdhuff.h</li>
+ <li>jerror.h</li>
+ <li>jidctint.c</li>
+ <li>jinclude.h</li>
+ <li>jmemsys.h</li>
+ <li>jmorecfg.h</li>
+ <li>jpegint.h</li>
+ <li>jpeglib.h</li>
+ <li>jversion.h</li>
+ <li>transupp.h</li>
+</ul>
+
+<p>The class org.eclipse.swt.internal.image.JPEGDecoder is based on the following files from LIBJPEG:</p>
+
+<ul>
+ <li>jcapimin.c</li>
+ <li>jcapistd.c</li>
+ <li>jccoefct.c</li>
+ <li>jccolor.c</li>
+ <li>jcdctmgr.c</li>
+ <li>jchuff.c</li>
+ <li>jcinit.c</li>
+ <li>jcmainct.c</li>
+ <li>jcmarker.c</li>
+ <li>jcmaster.c</li>
+ <li>jcomapi.c</li>
+ <li>jcparam.c</li>
+ <li>jcphuff.c</li>
+ <li>jcprepct.c</li>
+ <li>jcsample.c</li>
+ <li>jctrans.c</li>
+ <li>jdapimin.c</li>
+ <li>jdapistd.c</li>
+ <li>jdatadst.c</li>
+ <li>jdatasrc.c</li>
+ <li>jdcoefct.c</li>
+ <li>jdcolor.c</li>
+ <li>jddctmgr.c</li>
+ <li>jdhuff.c</li>
+ <li>jdinput.c</li>
+ <li>jdmainct.c</li>
+ <li>jdmarker.c</li>
+ <li>jdmaster.c</li>
+ <li>jdmerge.c</li>
+ <li>jdphuff.c</li>
+ <li>jdpostct.c</li>
+ <li>jdsample.c</li>
+ <li>jdtrans.c</li>
+ <li>jerror.c</li>
+ <li>jfdctflt.c</li>
+ <li>jfdctfst.c</li>
+ <li>jfdctint.c</li>
+ <li>jidctflt.c</li>
+ <li>jidctfst.c</li>
+ <li>jidctint.c</li>
+ <li>jidctred.c</li>
+ <li>jpegtran.c</li>
+ <li>jquant1.c</li>
+ <li>jquant2.c</li>
+ <li>jutils.c</li>
+ <li>cderror.h</li>
+ <li>cdjpeg.h</li>
+ <li>jchuff.h</li>
+ <li>jconfig.h</li>
+ <li>jdct.h</li>
+ <li>jdhuff.h</li>
+ <li>jerror.h</li>
+ <li>jinclude.h</li>
+ <li>jmorecfg.h</li>
+ <li>jpegint.h</li>
+ <li>jpeglib.h</li>
+ <li>jversion.h</li>
+ <li>transupp.h</li>
+</ul>
+
+<p>The following changes were made to the LIBJPEG code in the Content:</p>
+
+<ol>
+ <li>In Java, pointer math is not allowed so indexing was used instead.</li>
+ <li>Function pointers were replaced with switch statements.</li>
+ <li>The virtual memory, tracing and progress monitoring were removed.</li>
+ <li>The error handling was simplified and now uses Java exceptions.</li>
+</ol>
+
+<h4>PuTTY 0.58 (derivative work)</h4>
+
+<p>Portions of the SWT class org/eclipse/swt/internal/image/PngDeflater are based on PuTTY's sshzlib.c. PuTTY is made available by Mozilla.org. Use of PuTTY is governed by the terms and
+conditions of the the following MIT-style license: </p>
+<blockquote>
+ <p><em>PuTTY is copyright 1997-2007 Simon Tatham.</em> </p>
+ <p><em>Portions copyright Robert de Bath, Joris van Rantwijk, Delian Delchev, Andreas Schultz, Jeroen Massar, Wez Furlong, Nicolas Barry, Justin Bradford, Ben Harris, Malcolm Smith, Ahmad Khalifa, Markus Kuhn, and CORE SDI S.A.</em> </p>
+ <p><em>Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:</em> </p>
+ <p><em>The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.</em> </p>
+ <p><em>THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL SIMON TATHAM BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.</em> </p>
+</blockquote>
+<p>A copy of the license is also available at <a href="http://www.chiark.greenend.org.uk/~sgtatham/putty/licence.html" target="_blank">http://www.chiark.greenend.org.uk/~sgtatham/putty/licence.html</a>.</p>
+
+<p><small>Java and all Java-based trademarks and logos are trademarks or registered trademarks of Sun Microsystems, Inc. in the United States and other countries.</small></p>
+
+</body>
+</html>
\ No newline at end of file
UbioWebService.SpeciesTermSearch.URL=http://www.ubio.org/webservices/service.php?function=namebank_search&searchName=<search_term>&sci=1&vern=0&keyCode=9c5ed3537fb089c0467c42c4d70b3dee71cbf3cd
#Curators names
-CuratorNamesList=Nikhil Lingutla,Justin Preece,Pankaj Jaiswal,Laurel Cooper,Rajani Raja
\ No newline at end of file
+#CuratorNamesList1=Nikhil Lingutla,Justin Preece,Pankaj Jaiswal,Laurel Cooper,Rajani Raja,Panini
\ No newline at end of file
# UBio Web Service Configuration
UbioWebService.SpeciesTermSearch.URL=http://www.ubio.org/webservices/service.php?function=namebank_search&searchName=<search_term>&sci=1&vern=0&keyCode=9c5ed3537fb089c0467c42c4d70b3dee71cbf3cd
-#Curators names
-CuratorNamesList=Nikhil Lingutla,Justin Preece,Pankaj Jaiswal,Laurel Cooper,Rajani Raja
\ No newline at end of file
--- /dev/null
+\r
+#Curators names\r
+CuratorNamesList1=Nikhil Lingutla,Justin Preece,Pankaj Jaiswal,Laurel Cooper,Rajani Raja,Panini
\ No newline at end of file
private static final Logger log = Logger.getLogger("AppWindow");
public static Properties props;
+ public static Properties curatornames;
private AppPrefsManager prefsManager;
private ActionManager actions;
super(null);
props = loadProperties();
+ curatornames =loadCuratorNames();
addMenuBar();
addStatusLine();
throw new RuntimeException(e);
}
}
+ private Properties loadCuratorNames() {
+ try {
+ return Application.loadProperties(getCuratorNames());
+ } catch (IOException e) {
+ log.severe("Unable to load properties file " + e.getMessage());
+ throw new RuntimeException(e);
+ }
+ }
private String getPropertiesFile() {
return OsUtils.isMacOS() ? "application.mac" : "application";
}
+ private String getCuratorNames() {
+ return "curator";
+ }
public void updateWindowTitle() {
}
// Create view
- SegmentationView view = new SegmentationView(props, parent, 0);
+ SegmentationView view = new SegmentationView(props,curatornames, parent, 0);
boolean blocksOnFork = false;
import ie.dcu.segment.painters.SegmentationPainter;
import ie.dcu.swt.*;
import ie.dcu.swt.event.*;
-//import ie.dcu.apps.ist.activelearning.*;
import java.io.BufferedReader;
import java.io.InputStreamReader;
import org.eclipse.jface.resource.ImageDescriptor;
import org.eclipse.swt.SWT;
import org.eclipse.swt.events.*;
+import org.eclipse.swt.graphics.FontMetrics;
+import org.eclipse.swt.graphics.GC;
import org.eclipse.swt.graphics.Point;
import org.eclipse.swt.layout.*;
import org.eclipse.swt.widgets.*;
// Segmentation view properties
private final Properties props;
-
+ private final Properties curatornames;
// Houses various painters
private final PainterRegistry painters;
private static Button assign,searchSpecies;
+
public static Text collectionId, comment;
// Current segmentation tool
};
// constructor
- public SegmentationView(Properties props, Composite parent, int style) {
+ public SegmentationView(Properties props,Properties curatornames,Composite parent, int style) {
super(parent, style);
this.props = props;
-
+ this.curatornames = curatornames;
painters = new PainterRegistry();
mainToolbar = new ToolBar(this, SWT.RIGHT | SWT.FLAT);
viewSelectionToolbar = new ToolBar(this, SWT.RIGHT | SWT.FLAT);
public void resetView() {
Tool.LabelMode.action.setChecked(false);
resetViewSelectionToolbar(painters.get("Segmented"));
- //panini
+
// clear metadata
comboLabel.removeAll();
comboLabel.setEnabled(false);
clearTermDetailTable();
clearTermSynonymTable();
+ //collectionID.setLayoutData();
collectionId.setText("");
comment.setText("");
curatorCombo.deselectAll();
// Combo box and label for species
SwtUtils.addLabelToComposite(termDetailComposite, getAction(Tool.SetSpecies).getText());
- speciesCombo = SwtUtils.addComboToComposite(termDetailComposite, 250, SWT.READ_ONLY);
+ speciesCombo = SwtUtils.addComboToComposite(termDetailComposite, 150, SWT.READ_ONLY);
speciesCombo.setToolTipText( getAction(Tool.SetSpecies).getToolTipText());
searchSpecies = SwtUtils.addButtonToComposite(termDetailComposite, 75, "Search");
// Combo box and label for curator
SwtUtils.addLabelToComposite(termDetailComposite, getAction(Tool.SetCurator).getText());
- curatorCombo = SwtUtils.addComboToComposite(termDetailComposite, 250, SWT.READ_ONLY);
+ curatorCombo = SwtUtils.addComboToComposite(termDetailComposite, 150, SWT.READ_ONLY);
curatorCombo.setToolTipText( getAction(Tool.SetCurator).getToolTipText());
curatorCombo.addSelectionListener(new SelectionAdapter() {
public void widgetSelected(SelectionEvent e) {
execute(Tool.SetPainter, null);
}
});
- String[] curatorsList = AppWindow.props.getProperty("CuratorNamesList").split(",");
+ String[] curatorsList = AppWindow.curatornames.getProperty("CuratorNamesList1").split(",");
for(String curator : curatorsList)
curatorCombo.add(curator);
// text field for collection Id
SwtUtils.addLabelToComposite(termDetailComposite, "Collection Id");
collectionId = SwtUtils.addTextFieldToComposite(termDetailComposite);
+ //collectionId = new Text(termDetailComposite,250);
//collectionId.setToolTipText( getAction(Tool.SetPainter).getToolTipText());
-
+ //GC gc = new GC (collectionId);
+ //FontMetrics fm = gc.getFontMetrics ();
+ //int width = 250*fm.getAverageCharWidth ();
+ //int height = fm.getHeight ();
+ //gc.dispose ();
+ //collectionId.setSize (collectionId.computeSize (400, 1));
// Comments Text Area
SwtUtils.addLabelToComposite(termDetailComposite, "Comments");
comment = SwtUtils.addTextAreaToComposite(termDetailComposite);
+ //comment=new Text(termDetailComposite,SWT.MULTI);
//comment.setToolTipText( getAction(Tool.SetPainter).getToolTipText());
}
// Layout collection id box
gd = new GridData();
- gd.widthHint = width;
+ gd.widthHint = width+50;
gd.grabExcessHorizontalSpace = true;
gd.grabExcessVerticalSpace = true;
+
+ collectionId.setText("");
collectionId.setLayoutData(gd);
+
// Layout comments box
gd = new GridData();
- gd.widthHint = width;
+ gd.widthHint = heightHint;
+ gd.heightHint= heightHint;
gd.grabExcessHorizontalSpace = true;
gd.grabExcessVerticalSpace = true;
- gd.verticalAlignment = SWT.FILL;
+ gd.verticalAlignment = GridData.FILL;
+ gd.horizontalAlignment=GridData.FILL;
+ gd.grabExcessVerticalSpace = true;
+ gd.grabExcessHorizontalSpace = true;
+ gd.minimumWidth = width;
+ gd.verticalSpan=width;
+ gd.horizontalSpan= width;
+ comment.setText("");
+ //comment.getBounds();
+ comment.getHorizontalBar();
+ comment.getLineDelimiter();
+ comment.getVerticalBar();
+ comment.setSize(width, heightHint);
+
+ //comment.computeSize(heightHint, width);
comment.setLayoutData(gd);
}
*/
private void assignLabel() {
SegmentationPainter painter = painters.get("Segmented");
- //panini
+
setPainter(painter);
}
projects / old-jaiswallab-svn / .git / commitdiff