Saved the GO file as .xls for editting.

svn path=/; revision=452

diff --git a/po-associations/test_phenos/go_gene_oryza_phenos.assoc b/po-associations/test_phenos/go_gene_oryza_phenos.assoc
deleted file mode 100644 (file)
index ed894f4..0000000
--- a/po-associations/test_phenos/go_gene_oryza_phenos.assoc
+++ /dev/null
@@ -1,66 +0,0 @@
-DB     DB_Object_ID    DB_Object_Symbol        Qualifier       PO ID   DB: Reference   Evidence        With (or) From  Aspect  DB_Object_name  Synonym DB_Object_Type  Taxon   Date    Assigned_by     Annotation_extension    Gene Product Form ID
-GR     GR:0101258      TatC            GO:0010148              IMP             G       Sec-independent protein translocase subunit C           gene    taxon:4530      20130421        GR              
-GR     GR:0101253      Log             GO:0048281              IMP             G       Lonely Guy              gene    taxon:4530      20130421        GR              
-GR     GR:0061182      PLA2            GO:0010338              IMP             G       PLASTOCHRON2            gene    taxon:4530      20130421        GR              
-GR     GR:0061182      PLA2            GO:0048366              IMP             G       PLASTOCHRON2            gene    taxon:4530      20130421        GR              
-GR     GR:0061182      PLA2            GO:0010346              IMP             G       PLASTOCHRON2            gene    taxon:4530      20130421        GR              
-GR     GR:0080029      DOS             GO:0010150              IMP             G       delay of the onset of senescence                gene    taxon:4530      20130421        GR              
-GR     GR:0060882      SHL4            GO:0048364              IMP             G       SHOOTLESS 4             gene    taxon:4530      20130421        GR              
-GR     GR:0061178      MSP1            GO:0010480              IMP             G       MULTIPLE SPOROCYTE 1            gene    taxon:4530      20130421        GR              
-GR     GR:0060070      BC3             GO:0010229              IMP             G       BRITTLE CULM 3          gene    taxon:4530      20130421        GR              
-GR     GR:0060068      BC1             GO:0005618              IMP             A       BRITTLE CULM 1          gene    taxon:4530      20130421        GR              
-GR     GR:0080042      MEL1            GO:0030261              IMP             G       MEIOSIS ARRESTED AT LEPTOTENE 1         gene    taxon:4530      20130421        GR              
-GR     GR:0101251      DCL1            GO:0048364              IMP             G       DICER-LIKE 1            gene    taxon:4530      20130421        GR              
-GR     GR:0101251      DCL1            GO:0005694              IMP             A       DICER-LIKE 1            gene    taxon:4530      20130421        GR              
-GR     GR:0101251      DCL1            GO:0035198              IMP             G       DICER-LIKE 1            gene    taxon:4530      20130421        GR              
-GR     GR:0800010      AID1            GO:0010228              IMP             G       ANTHER INDEHISCENCE 1           gene    taxon:4530      20130422        GR              
-GR     GR:0061116      PLA1            GO:0009965              IMP             G       PLASTOCHRON 1           gene    taxon:4530      20130422        GR              
-GR     GR:0061116      PLA1            GO:0010229              IMP             G       PLASTOCHRON 1           gene    taxon:4530      20130422        GR              
-GR     GR:0080009      LSI1            GO:0055085              IMP             G       LOW SILICON RICE 1              gene    taxon:4530      20130422        GR              
-GR     GR:0080009      LSI1            GO:0031347              IMP             G       LOW SILICON RICE 1              gene    taxon:4530      20130422        GR              
-GR     GR:0080021      MADS22          GO:0048439              IMP             G       MADS BOX GENE 22                gene    taxon:4530      20130422        GR              
-GR     GR:0100118      RCN2            GO:0048281              IMP             G       RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 2         gene    taxon:4530      20130422        GR              
-GR     GR:0060995      VP1             GO:0009790              IMP             G       VIVIPAROUS 1            gene    taxon:4530      20130422        GR              
-GR     GR:0080028      REH1            GO:0048830              IMP             G       rice EIR1-like          gene    taxon:4530      20130422        GR              
-GR     GR:0080037      LSI2            GO:0040007              IMP             G       LOW SILICON RICE 2              gene    taxon:4530      20130422        GR              
-GR     GR:0060213      D35             GO:0009686              IMP             G       DWARF TANGINBOZU                gene    taxon:4530      20130422        GR              
-GR     GR:0080022      WDA1            GO:0042759              IMP             G       WAX-DEFICIENT ANTHER 1          gene    taxon:4530      20130422        GR              
-GR     GR:0080022      WDA1            GO:0009556              IMP             G       WAX-DEFICIENT ANTHER 1          gene    taxon:4530      20130422        GR              
-GR     GR:0080022      WDA1            GO:0010584              IMP             G       WAX-DEFICIENT ANTHER 1          gene    taxon:4530      20130422        GR              
-GR     GR:0100117      RCN1            GO:0048281              IMP             G       RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 1         gene    taxon:4530      20130422        GR              
-GR     GR:0080035      SCR             GO:0051301              IMP             G       SCARECROW GENE          gene    taxon:4530      20130422        GR              
-GR     GR:0100119      PAIR1           GO:0005694              IMP             A       HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1         gene    taxon:4530      20130422        GR              
-GR     GR:0100119      PAIR1           GO:0007129              IMP             G       HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1         gene    taxon:4530      20130422        GR              
-GR     GR:0100119      PAIR1           GO:0030435              IMP             G       HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1         gene    taxon:4530      20130422        GR              
-GR     GR:0100119      PAIR1           GO:0005730              IMP             A       HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1         gene    taxon:4530      20130422        GR              
-GR     GR:0060339      FZP             GO:0009908              IMP             G       FRIZZY PANICLE          gene    taxon:4530      20130422        GR              
-GR     GR:0060859      SDR4            GO:0010162              IMP             G       SEED DORMANCY 4         gene    taxon:4530      20130422        GR              
-GR     GR:0060859      SDR4            GO:0009845              IMP             G       SEED DORMANCY 4         gene    taxon:4530      20130422        GR              
-GR     GR:0080036      SNB             GO:0048461              IMP             G       SUPERNUMERARY BRACT GENE                gene    taxon:4530      20130422        GR              
-GR     GR:0080007      UDT1            GO:0048655              IMP             G       UNDEVELOPED TAPETUM 1           gene    taxon:4530      20130422        GR              
-GR     GR:0080061      PROG1           GO:0040007              IMP             G       PROSTRATE GROWTH 1              gene    taxon:4530      20130422        GR              
-GR     GR:0080025      MADS18          GO:0010228              IMP             G       MADS BOX GENE 18                gene    taxon:4530      20130422        GR              
-GR     GR:0080025      MADS18          GO:0040007              IMP             G       MADS BOX GENE 18                gene    taxon:4530      20130422        GR              
-GR     GR:0060883      SHO1            GO:0048366              IMP             G       SHOOT ORGANIZATION 1            gene    taxon:4530      20130422        GR              
-GR     GR:0060883      SHO1            GO:0051301              IMP             G       SHOOT ORGANIZATION 1            gene    taxon:4530      20130422        GR              
-GR     GR:0080017      DWARF           GO:0048366              IMP             G       BRASSINOSTEROID-DEFICIENT DWARF 1               gene    taxon:4530      20130422        GR              
-GR     GR:0060842      SD1             GO:0051301              IMP             G       SEMIDWARF 1             gene    taxon:4530      20130422        GR              
-GR     GR:0060058      APO1            GO:0060773              IMP             G       Aberrant Panicle Organization           gene    taxon:4530      20130422        GR              
-GR     GR:0060058      APO1            GO:0048439              IMP             G       Aberrant Panicle Organization           gene    taxon:4530      20130422        GR              
-GR     GR:0080030      CPT1            GO:0009638              IMP             G       Coleoptile Phototropism         gene    taxon:4530      20130422        GR              
-GR     GR:0060233      DL              GO:0009058              IMP             G       Drooping Leaf           gene    taxon:4530      20130422        GR              
-GR     GR:0060233      DL              GO:0048440              IMP             G       Drooping Leaf           gene    taxon:4530      20130422        GR              
-GR     GR:0204815      DSG1            GO:0009845              IMP             G       Delayed Seed Germination                gene    taxon:4530      20130422        GR              
-GR     GR:0204815      DSG1            GO:0040007              IMP             G       Delayed Seed Germination                gene    taxon:4530      20130422        GR              
-GR     GR:0204815      DSG1            GO:0042538              IMP             G       Delayed Seed Germination                gene    taxon:4530      20130422        GR              
-GR     GR:0204815      DSG1            GO:0009414              IMP             G       Delayed Seed Germination                gene    taxon:4530      20130422        GR              
-GR     GR:0080062      GIF1            GO:0010154              IMP             G       Grain Incomplete Filling                gene    taxon:4530      20130422        GR              
-GR     GR:0080062      GIF1            GO:0043036              IMP             A       Grain Incomplete Filling                gene    taxon:4530      20130422        GR              
-GR     GR:0060442      HD3A            GO:0010228              IMP             G       Heading Date            gene    taxon:4530      20130422        GR              
-GR     GR:0080041      MADS13          GO:0048462              IMP             G       MADS Box Gene           gene    taxon:4530      20130422        GR              
-GR     GR:0080041      MADS13          GO:0048283              IMP             G       MADS Box Gene           gene    taxon:4530      20130422        GR              
-GR      GR:0080008     MOC1            GO:0009058              IMP             G       Monoculm                gene    taxon:4530      20130422        GR              
-GR     GR:0060864      SE5             GO:0010228              IMP             G       Photosensitivity                gene    taxon:4530      20130422        GR              
-GR     GR:0020145      TDR             GO:0048443              IMP             G       Tapetum Degeneration Retardation                gene    taxon:4530      20130422        GR              
-GR     GR:0101186      ZEP1            GO:0009845              IMP             G       Zeaxanthin Epoxidase            gene    taxon:4530      20130422        GR              
-GR      GR:0100120     PAIR2           GO:0007129              IMP             G       Homologous Pairing Aberration in Rice Meiosis           gene    taxon:4530      20130422        GR              

diff --git a/po-associations/test_phenos/go_gene_oryza_phenos.assoc.xls b/po-associations/test_phenos/go_gene_oryza_phenos.assoc.xls
new file mode 100644 (file)
index 0000000..3120a3a
Binary files /dev/null and b/po-associations/test_phenos/go_gene_oryza_phenos.assoc.xls differ