Updating files formats to gaf 2.1

svn path=/; revision=1040

diff --git a/po-associations/po_anatomy_gene_model_zea_MaizeGDB.assoc b/po-associations/po_anatomy_gene_model_zea_MaizeGDB.assoc
index 33b045aa68385d43ee605d55f8fd2c645294c83a..b04074c794706ff2db576ea9e1697f5fef15980c 100644 (file)
--- a/po-associations/po_anatomy_gene_model_zea_MaizeGDB.assoc
+++ b/po-associations/po_anatomy_gene_model_zea_MaizeGDB.assoc
@@ -1,4 +1,4 @@
-!gaf-version: 2.0      
+!gaf-version: 2.1      
 MaizeGDB       GRMZM2G000014   GRMZM2G000014           PO:0000037      PMID:21299659|MaizeGDB_REF:9021423      IEP             A       GRMZM2G000014           gene_model      taxon:4577      20111006        MaizeGDB                
 MaizeGDB       GRMZM2G000014   GRMZM2G000014           PO:0006310      PMID:21299659|MaizeGDB_REF:9021423      IEP             A       GRMZM2G000014           gene_model      taxon:4577      20111006        MaizeGDB                
 MaizeGDB       GRMZM2G000014   GRMZM2G000014           PO:0006339      PMID:21299659|MaizeGDB_REF:9021423      IEP             A       GRMZM2G000014           gene_model      taxon:4577      20111006        MaizeGDB                

diff --git a/po-associations/po_anatomy_gene_physcomitrella_gramene.assoc b/po-associations/po_anatomy_gene_physcomitrella_gramene.assoc
index ce28cd39d3a35c151758561822a4404606e569a4..f74dbbfaffd34fb5dfcfc69c86c09c232c6e075f 100644 (file)
--- a/po-associations/po_anatomy_gene_physcomitrella_gramene.assoc
+++ b/po-associations/po_anatomy_gene_physcomitrella_gramene.assoc
@@ -1,4 +1,4 @@
-!gaf-version: 2.0
+!gaf-version: 2.1
 Gramene        ESTEXT_GENEWISE1.C_800048       FtsZ2-1         PO:0030002      PMID:19567705   IEP             A       plastid division        protein gene    taxon:3218      20110525        Jaiswal_lab             
 Gramene        ESTEXT_GENEWISE1.C_800048       FtsZ2-1         PO:0030023      PMID:19567705   IEP             A       plastid division        protein gene    taxon:3218      20110525        Jaiswal_lab             
 Gramene        ESTEXT_FGENESH1_PM.C_3810004    ACTIN3          PO:0030002      PMID:19567705   IEP             A       Actin 3 ACT3    gene    taxon:3218      20110525        Jaiswal_lab             

diff --git a/po-associations/po_anatomy_gene_vitis_poc.assoc b/po-associations/po_anatomy_gene_vitis_poc.assoc
index 7099a6f4e4dc33d9b1fb3ce780b9949ce5884d6f..8e5c639eaaf27301b15afeea7ebf7b07e6f9ac8d 100644 (file)
--- a/po-associations/po_anatomy_gene_vitis_poc.assoc
+++ b/po-associations/po_anatomy_gene_vitis_poc.assoc
@@ -1,4 +1,4 @@
-!gaf-version: 2.0      
+!gaf-version: 2.1      
 CRIBI_Vitis    VIT_00s0125g00150       VIT_00s0125g00150               PO:0004709      PMID:22948079   IEP             A                       gene    taxon:29760     20121215        POC:Laurel_Cooper       participates_in(PO:0025532)     
 CRIBI_Vitis    VIT_00s0125g00300       VIT_00s0125g00300               PO:0009029      PMID:22948079   IEP             A                       gene    taxon:29760     20121215        POC:Laurel_Cooper       participates_in(PO:0007016)     
 CRIBI_Vitis    VIT_00s0125g00300       VIT_00s0125g00300               PO:0009032      PMID:22948079   IEP             A                       gene    taxon:29760     20121215        POC:Laurel_Cooper       participates_in(PO:0007016)     

diff --git a/po-associations/po_anatomy_mRNA_physcomitrella_cosmoss_V1.2.assoc b/po-associations/po_anatomy_mRNA_physcomitrella_cosmoss_V1.2.assoc
index e3a4794c59612a9a5c7b7a8dd9a4b88f2a1e90b7..f332faa28a84b488d8f5cb22cc0bcb4d3b3535b4 100644 (file)
--- a/po-associations/po_anatomy_mRNA_physcomitrella_cosmoss_V1.2.assoc
+++ b/po-associations/po_anatomy_mRNA_physcomitrella_cosmoss_V1.2.assoc
@@ -1,4 +1,4 @@
-!gaf-version: 2.0
+!gaf-version: 2.1
 cosmoss_PpV1.2 Pp1s10008_1V2.1 Pp1s10008_1V2.1         PO:0000006      PMID:18762443|PMID:18079367     IEP             A               Phypa_104242|PHYPADRAFT_104242  mRNA    taxon:3218      20110906        plantco.de|cosmoss.org  occurs_in(PECO:0007265) cosmoss_PpV1.2:Pp1s10008_1V2.1
 cosmoss_PpV1.2 Pp1s10008_1V2.1 Pp1s10008_1V2.1         PO:0025017      PMID:18762443|PMID:18079367     IEP             A               Phypa_104242|PHYPADRAFT_104242  mRNA    taxon:3218      20110906        plantco.de|cosmoss.org          cosmoss_PpV1.2:Pp1s10008_1V2.1
 cosmoss_PpV1.2 Pp1s10008_1V2.1 Pp1s10008_1V2.1         PO:0030003      PMID:18762443|PMID:18079367     IEP             A               Phypa_104242|PHYPADRAFT_104242  mRNA    taxon:3218      20110906        plantco.de|cosmoss.org  occurs_in(PECO:0007262) cosmoss_PpV1.2:Pp1s10008_1V2.1

diff --git a/po-associations/po_gene_Capsicum_sgn.assoc b/po-associations/po_gene_Capsicum_sgn.assoc
index 975a3e9ff52eadbaf463037f04bb882bf25138a8..03b3257107f2d5631c72c6b0df05f3b02925d866 100644 (file)
--- a/po-associations/po_gene_Capsicum_sgn.assoc
+++ b/po-associations/po_gene_Capsicum_sgn.assoc
@@ -1,4 +1,4 @@
-!gaf-version: 2.0
+!gaf-version: 2.1
 SGN_gene       3826    CanPI-3         PO:0009001      PMID:19393726   IEP     NCBI_gi:62467829        A       Pin2-type proteinase inhibitor (PI-3)   PI-3    gene    taxon:4071      20090813        SGN             
 SGN_gene       3857    CaPI-2          PO:0009047      SGN_ref:17993   IEP     NCBI_gi:2745897 A       wound-induced proteinase inhibitor II precursor Pin2|CanPI-1    gene    taxon:4071      20090807        SGN             
 SGN_gene       3857    CaPI-2          PO:0009005      SGN_ref:17993   IEP     NCBI_gi:2745897 A       wound-induced proteinase inhibitor II precursor Pin2|CanPI-1    gene    taxon:4071      20090807        SGN             

diff --git a/po-associations/po_gene_Datura_sgn.assoc b/po-associations/po_gene_Datura_sgn.assoc
index 8ab906defb5528e0ccb92d37d986a5ee52b90d9d..74cb857ba9feddb7bede12f1f77c6cc6c1d40396 100644 (file)
--- a/po-associations/po_gene_Datura_sgn.assoc
+++ b/po-associations/po_gene_Datura_sgn.assoc
@@ -1,4 +1,4 @@
-!gaf-version: 2.0
+!gaf-version: 2.1
 SGN_gene       4510    DUTROPR_I               PO:0000008      PMID:8415746    IEP     NCBI_gi:424159  A       tropinone reductase I           gene    taxon:4074      20080404        SGN             
 SGN_gene       5003    pmt2            PO:0009005      PMID:17221359   IEP     NCBI_gi:35208828        A       putrescine N-methyltransferase 2        pmt     gene    taxon:4074      20090625        SGN             
 SGN_gene       5004    pmt1            PO:0009005      PMID:17221359   IEP     NCBI_gi:86438863        A       putrescine N-methyltransferase 1        PMT     gene    taxon:4074      20090702        SGN             

diff --git a/po-associations/po_gene_Nicotiana_sgn.assoc b/po-associations/po_gene_Nicotiana_sgn.assoc
index 7434f5b0b72bc8dd57e6f26df786447099b88bb4..32686639eba04a5b5518ee255e8595bd914567c2 100644 (file)
--- a/po-associations/po_gene_Nicotiana_sgn.assoc
+++ b/po-associations/po_gene_Nicotiana_sgn.assoc
@@ -1,4 +1,4 @@
-!gaf-version: 2.0
+!gaf-version: 2.1
 SGN_gene       4501    CYP82E4v1               PO:0009025      PMID:16192354   IEP     NCBI_gi:74475187        A       CYP82E4v1               gene    taxon:4085      20080201        SGN             
 SGN_gene       4502    CYP82E4v2               PO:0009025      PMID:16192354   IEP     NCBI_gi:74475185        A       CYP82E4v2               gene    taxon:4085      20080201        SGN             
 SGN_gene       6727    pmt3            PO:0009005      PMID:10965939   IEP     NCBI_gi:9453833 A       putrescine N-methyltransferase 3        NtPMT3  gene    taxon:4085      20090630        SGN             

diff --git a/po-associations/po_gene_Petunia_sgn.assoc b/po-associations/po_gene_Petunia_sgn.assoc
index 2f22f843ce3aa69e6c75f569710cecd57bee3297..9a21dfa9311815a1a0009318b6bd552c05f7d291 100644 (file)
--- a/po-associations/po_gene_Petunia_sgn.assoc
+++ b/po-associations/po_gene_Petunia_sgn.assoc
@@ -1,4 +1,4 @@
-!gaf-version: 2.0
+!gaf-version: 2.1
 SGN_gene       8298    MAW             PO:0009025      PMID:19717616   IMP             A       MAEWEST         gene    taxon:4101      20091023        SGN             
 SGN_gene       8298    MAW             PO:0009046      PMID:19717616   IMP             A       MAEWEST         gene    taxon:4101      20091023        SGN             
 SGN_gene       8299    CHSU            PO:0009046      PMID:19717616   IMP             A       CHORIPETALA SUZANNE             gene    taxon:4101      20091023        SGN             

diff --git a/po-associations/po_gene_S.lycopersicum_sgn.assoc b/po-associations/po_gene_S.lycopersicum_sgn.assoc
index 7c25875909fa87f607297a0d492728782dbe9453..70b6200181562e3a3e1082b1dbb0346909a84cd7 100644 (file)
--- a/po-associations/po_gene_S.lycopersicum_sgn.assoc
+++ b/po-associations/po_gene_S.lycopersicum_sgn.assoc
@@ -1,4 +1,4 @@
-!gaf-version: 2.0
+!gaf-version: 2.1
 SGN_gene       128     an              PO:0009049      SGN_ref:861     IMP             A       anantha an^1|an^2|ca|Solyc02g081670     gene    taxon:4081      20071016        SGN             
 SGN_gene       484     etr4            PO:0009001      PMID:17655616   IMP             A       ethylene receptor homolog (ETR4)        LeETR4|ETR4|Solyc06g053710      gene    taxon:4081      20070927        SGN             
 SGN_gene       538     fas             PO:0009001      PMID:15292992   IMP             A       fasciated       Solyc11g071810  gene    taxon:4081      20071107        SGN             

diff --git a/po-associations/po_gene_Z.mays_PPPP.assoc b/po-associations/po_gene_Z.mays_PPPP.assoc
index 6a503c935cc68706847f284f7cdf083d1c979713..a43fc3dbf7db031e3804f298f9c41e699b56cfb3 100644 (file)
--- a/po-associations/po_gene_Z.mays_PPPP.assoc
+++ b/po-associations/po_gene_Z.mays_PPPP.assoc
@@ -1,4 +1,4 @@
-!gaf-version: 2.0
+!gaf-version: 2.1
 MaizeGDB       854977  brk1            PO:0004013      PMID:21423772   IMP             A       GRMZM5G842058   brick1  gene    taxon:4577      20150504        Planteome:Ethan_Johnson         
 MaizeGDB       854977  brk1            PO:0025215      PMID:21423772   IMP             A       GRMZM5G842058   brick1  gene    taxon:4577      20150504        Planteome:Ethan_Johnson         
 MaizeGDB       854977  brk1            PO:0000047      PMID:21423772   IMP             A       GRMZM5G842058   brick1  gene    taxon:4577      20150504        Planteome:Ethan_Johnson         

diff --git a/po-associations/po_growth_qtl_oryza_gramene.assoc b/po-associations/po_growth_qtl_oryza_gramene.assoc
index 707e90a87ed11ee0df1238ec628cf35e2874aa6e..8fd97d2aa215bf6d9fb2d4eca5b32c29af295e5c 100644 (file)
--- a/po-associations/po_growth_qtl_oryza_gramene.assoc
+++ b/po-associations/po_growth_qtl_oryza_gramene.assoc
@@ -1,4 +1,4 @@
-!gaf-version: 2.0
+!gaf-version: 2.1
 GR_QTL CQG5    ABXSTOFQ                PO:0007134      GR_ref:7810     IMP             G       abaxial stomatal frequency              QTL     taxon:4530      20090923        Gramene         
 GR_QTL CQG5    ABXSTOFQ                PO:0007130      GR_ref:11453    IC              G       abaxial stomatal frequency              QTL     taxon:4530      20090923        Gramene         
 GR_QTL CQG2    ABXSTOFQ                PO:0007134      GR_ref:7810     IMP             G       abaxial stomatal frequency      qabs3   QTL     taxon:4530      20090923        Gramene