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continued fixes in evidence codes
authorelserj <elserj@localhost>
Fri, 26 Aug 2016 22:58:55 +0000 (22:58 +0000)
committerelserj <elserj@localhost>
Fri, 26 Aug 2016 22:58:55 +0000 (22:58 +0000)
svn path=/; revision=774

eo-associations/eo_protein_Oryza_Gramene.assoc patch | blob | history
go-associations/go_gene_Oryza_Gramene.assoc patch | blob | history

diff --git a/eo-associations/eo_protein_Oryza_Gramene.assoc b/eo-associations/eo_protein_Oryza_Gramene.assoc
index a441c34b36bf736c840f031f43540b42cd0384a2..e6e2a6307d8479d5f1986e084fa64db4a3b66564 100644 (file)
--- a/eo-associations/eo_protein_Oryza_Gramene.assoc
+++ b/eo-associations/eo_protein_Oryza_Gramene.assoc
@@ -49,10 +49,10 @@ GR_protein  Q8L809  dmc1A           EO:0007255      GR_REF:11089    IC              E       Dmc1 protein type A             prot
 GR_protein     Q8H848  OJ1626B05.9             EO:0007409      GR_REF:11409    IMP             E       Putative steroid 22-alpha-hydroxylase   Cytochrome P450|OsDWARF4        protein taxon:39947     20060831        Gramene
 GR_protein     Q8H848  OJ1626B05.9             EO:0007256      GR_REF:11089    IC              E       Putative steroid 22-alpha-hydroxylase   Cytochrome P450|OsDWARF4        protein taxon:39947     20060831        Gramene
 GR_protein     Q8H848  OJ1626B05.9             EO:0007256      GR_REF:11409    IC              E       Putative steroid 22-alpha-hydroxylase   Cytochrome P450|OsDWARF4        protein taxon:39947     20060831        Gramene
-GR_protein     Q8H5T6  LTI6A           EO:0007105      GR_REF:11452    SM              E       Low temperature induced 6A      DRR1|Hydrophobic protein LTI6A|Low temperature induced 6A|OJ1136_D11.3|OsDRR1|OsLti6A   protein taxon:39947     20070123        Gramene
-GR_protein     Q8H5T6  LTI6A           EO:0007174      GR_REF:11452    SM              E       Low temperature induced 6A      DRR1|Hydrophobic protein LTI6A|Low temperature induced 6A|OJ1136_D11.3|OsDRR1|OsLti6A   protein taxon:39947     20070123        Gramene
-GR_protein     Q8H5T6  LTI6A           EO:0007404      GR_REF:11452    SM              E       Low temperature induced 6A      DRR1|Hydrophobic protein LTI6A|Low temperature induced 6A|OJ1136_D11.3|OsDRR1|OsLti6A   protein taxon:39947     20070123        Gramene
-GR_protein     Q8H5T6  LTI6A           EO:0007048      GR_REF:11452    SM              E       Low temperature induced 6A      DRR1|Hydrophobic protein LTI6A|Low temperature induced 6A|OJ1136_D11.3|OsDRR1|OsLti6A   protein taxon:39947     20070123        Gramene
+GR_protein     Q8H5T6  LTI6A           EO:0007105      GR_REF:11452    IAGP            E       Low temperature induced 6A      DRR1|Hydrophobic protein LTI6A|Low temperature induced 6A|OJ1136_D11.3|OsDRR1|OsLti6A   protein taxon:39947     20070123        Gramene
+GR_protein     Q8H5T6  LTI6A           EO:0007174      GR_REF:11452    IAGP            E       Low temperature induced 6A      DRR1|Hydrophobic protein LTI6A|Low temperature induced 6A|OJ1136_D11.3|OsDRR1|OsLti6A   protein taxon:39947     20070123        Gramene
+GR_protein     Q8H5T6  LTI6A           EO:0007404      GR_REF:11452    IAGP            E       Low temperature induced 6A      DRR1|Hydrophobic protein LTI6A|Low temperature induced 6A|OJ1136_D11.3|OsDRR1|OsLti6A   protein taxon:39947     20070123        Gramene
+GR_protein     Q8H5T6  LTI6A           EO:0007048      GR_REF:11452    IAGP            E       Low temperature induced 6A      DRR1|Hydrophobic protein LTI6A|Low temperature induced 6A|OJ1136_D11.3|OsDRR1|OsLti6A   protein taxon:39947     20070123        Gramene
 GR_protein     Q8GT95  FOR1            EO:0007269      GR_REF:8170     IMP             E       Polygalacturonase inhibitor 1 precursor OsFOR1|Polygalacturonase inhibitor 1|Polygalacturonase-inhibiting protein       protein taxon:39947     20060831        Gramene
 GR_protein     Q8GT95  FOR1            EO:0007255      GR_REF:8170     IMP             E       Polygalacturonase inhibitor 1 precursor OsFOR1|Polygalacturonase inhibitor 1|Polygalacturonase-inhibiting protein       protein taxon:39947     20060831        Gramene
 GR_protein     Q8GSQ1  CYP85A1         EO:0007409      GR_REF:7051     IMP             E       Cytochrome P450 85A1    C6-oxidase|OsDWARF      protein taxon:39947     20060831        Gramene
@@ -194,8 +194,8 @@ GR_protein  P0C132  IAA30           EO:0007255      GR_REF:11089    IC              E       Auxin-responsive protein
 GR_protein     P0C133  IAA31           EO:0007255      GR_REF:11089    IC              E       Auxin-responsive protein IAA31  Indoleacetic acid-induced protein 31|Os12g40900 protein taxon:39947     20060831        Gramene
 GR_protein     Q2QNH0  BOR1            EO:0007273      GR_REF:11089    IC              E       Boron transporter 1     Boron transporter 1, putative, expressed|Os12g0566000   protein taxon:39947     20070815        Gramene
 GR_protein     Q2R3B4  Os11g0528700            EO:0007255      GR_REF:11077    IC              E       Indole-3-acetic acid-amido synthetase GH3.1, putative   Auxin-regulated protein GH3 homolog F3H9.21, putative|OsGH3.13  protein taxon:39947     20060831        Gramene
-GR_protein     Q2XPP4  APG4            EO:0007256      GR_REF:11433    SM              E       Autophagy 4     APG4|OsAtg4     protein taxon:39946     20060831        Gramene
-GR_protein     Q2XPP5  APG8            EO:0007256      GR_REF:11433    SM              E       Autophagy 8             protein taxon:39946     20060831        Gramene
+GR_protein     Q2XPP4  APG4            EO:0007256      GR_REF:11433    IAGP            E       Autophagy 4     APG4|OsAtg4     protein taxon:39946     20060831        Gramene
+GR_protein     Q2XPP5  APG8            EO:0007256      GR_REF:11433    IAGP            E       Autophagy 8             protein taxon:39946     20060831        Gramene
 GR_protein     Q1MSJ4  eif(iso)4g              EO:0007269      GR_REF:11146    IMP             E       Putative eukaryotic translation initiation factor 4 gamma               protein taxon:39946     20060831        Gramene
 GR_protein     Q1MSJ4  eif(iso)4g              EO:0007210      GR_REF:11146    IMP             E       Putative eukaryotic translation initiation factor 4 gamma               protein taxon:39946     20060831        Gramene
 GR_protein     Q1MSJ4  eif(iso)4g              EO:0007318      GR_REF:11089    IC              E       Putative eukaryotic translation initiation factor 4 gamma               protein taxon:39946     20070430        Gramene
@@ -220,7 +220,7 @@ GR_protein  Q0JF02  Os04g0178300            EO:0007255      GR_REF:11089    IC              E       Os04g0178300 prote
 GR_protein     Q0JEZ8  Os04g0179700            EO:0007255      GR_REF:11089    IC              E       Os04g0179700 protein            protein taxon:39947     20080220        Gramene
 GR_protein     Q0JF01  CYP99A3         EO:0007222      GR_REF:11089    IC              E       cytochrome P450 monooxygenase   Os04g0178400|Os04g0178400 protein       protein taxon:39947     20080222        Gramene
 GR_protein     Q0E088  Os02g0570400            EO:0007255      GR_REF:11089    IC              E       Os02g0570400 protein            protein taxon:39947     20080220        Gramene
-GR_protein     Q0DKY4  SAMS1           EO:0007048      GR_REF:11089    NOT             E       S-adenosyl-L-methionine synthetase 1    Os05g0135700|Os05g0135700 protein       protein taxon:39947     20080701        Gramene
+GR_protein     Q0DKY4  SAMS1           EO:0007048      GR_REF:11089    IC              E       S-adenosyl-L-methionine synthetase 1    Os05g0135700|Os05g0135700 protein       protein taxon:39947     20080701        Gramene
 GR_protein     Q01M90  MAS1            EO:0007222      GR_REF:11089    IC              E       Momilactone A synthase 1        OSIGBa0109M01.3|OSIGBa0109M01.3 protein protein taxon:4530      20080222        Gramene
 GR_protein     Q01M92  CYP99A3         EO:0007222      GR_REF:11089    IC              E       cytochrome P450 monooxygenase   OSIGBa0109M01.1|OSIGBa0109M01.1 protein protein taxon:4530      20080222        Gramene
 GR_protein     A2TGS0  ABI5            EO:0007105      GR_REF:11089    IC              E       ABA Insensitive 5       BZIP-type transcription factor ABI5 isoform 1   protein taxon:39947     20080208        Gramene
diff --git a/go-associations/go_gene_Oryza_Gramene.assoc b/go-associations/go_gene_Oryza_Gramene.assoc
index 741fd8a9704ab2cc14f70cc422e45c7ea95ab7c7..a790fae1270a5046d7c0669ecc3e56908660356b 100644 (file)
--- a/go-associations/go_gene_Oryza_Gramene.assoc
+++ b/go-associations/go_gene_Oryza_Gramene.assoc
@@ -973,7 +973,7 @@ GR_gene     GR:0060897      SLR             GO:0006350      GR_REF:0        IMP                     SLENDER RICE    slr,OsGAI,slr,sle
 GR_gene        GR:0060897      SLR             GO:0009740      GR_REF:0        IMP                     SLENDER RICE    slr,OsGAI,slr,slender rice,slr,slender rice,LOC_Os03g49990      gene    taxon:4530      20130731        Gramene         
 GR_gene        GR:0060897      SLR             GO:0040029      GR_REF:0        IMP                     SLENDER RICE    slr,OsGAI,slr,slender rice,slr,slender rice,LOC_Os03g49990      gene    taxon:4530      20130731        Gramene         
 GR_gene        GR:0060897      SLR             GO:0045449      GR_REF:0        IMP                     SLENDER RICE    slr,OsGAI,slr,slender rice,slr,slender rice,LOC_Os03g49990      gene    taxon:4530      20130731        Gramene         
-GR_gene        GR:0060898      IMP             GO:0009625      GR_REF:0        SM                      STEM MAGGOT RESISTANCE  Sm,Stem maggot resistance,Sm,Stem maggot resistance     gene    taxon:4530      20130731        Gramene         
+GR_gene        GR:0060898      SM              GO:0009625      GR_REF:0        IMP                     STEM MAGGOT RESISTANCE  Sm,Stem maggot resistance,Sm,Stem maggot resistance     gene    taxon:4530      20130731        Gramene         
 GR_gene        GR:0060899      SOD             GO:0004784      GR_REF:0        IMP                     SUPEROXIDE DISMUTASE    sod,superoxide dismutase,sod,superoxide dismutase       gene    taxon:4530      20130731        Gramene         
 GR_gene        GR:0060901      SPK             GO:0007275      GR_REF:0        IMP                     SPREADING STUB  Spk(t),Spk,Spreading stub,Spk,Spreading stub    gene    taxon:4530      20130731        Gramene         
 GR_gene        GR:0060914      SPR2            GO:0007275      GR_REF:0        IMP                     SPREADING PANICLE 2     Spr2a,Spreading panicle-2a,Spr2,Spreading panicle-2,Spr2,Spreading panicle-2    gene    taxon:4530      20130731        Gramene         
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