Add Cornus florida

svn path=/; revision=682

diff --git a/interactome_scripts/find_species.pl b/interactome_scripts/find_species.pl
index 97d2e2eccbd270ac9c9cc15b24d734c2905e4157..bd56ac8276a11b4578500f69177ddda10f1ef8ff 100755 (executable)
--- a/interactome_scripts/find_species.pl
+++ b/interactome_scripts/find_species.pl
@@ -90,6 +90,8 @@ sub find_species {
                $species = "Corchorus_capsularis";
        }elsif ($temp =~ /Corchorus\_olitorius/) {
                $species = "Corchorus_olitorius";
+       }elsif ($temp =~ /Cornus_florida/) {
+               $species = "Cornus_florida";
        }elsif ($temp =~ /Cucumis\_sativus/) {
                $species = "Cucumis_sativus";
        }elsif ($temp =~ /Danio/) {
@@ -466,6 +468,9 @@ sub find_gene {
        }elsif ($species eq "Corchorus_olitorius") {
                my ($type, $gene_id, $gene_id_suffix, $function) = split(/[\|\s]+/, $gene_header);
                $gene = $gene_id;
+       }elsif ($species eq "Cornus_florida") {
+               #my ($spec, $contig, $start, $stop, $gene_id, $unknown, $type, $junk) = split(/\|\|/, $gene_header);
+               $gene = $gene_header;
        }elsif ($species eq "Cucumis_sativus") {
                $gene = ensembl_gene($gene_header);
        }elsif ($species eq "Danio_rerio") {
@@ -1178,6 +1183,7 @@ sub all_species_array {
        push (@spec_array, "Citrus_clementina");
        push (@spec_array, "Citrus_sinensis");
        push (@spec_array, "Coffea_canephora");
+       push (@spec_array, "Cornus_florida");
        push (@spec_array, "Cucumis_sativus");
        push (@spec_array, "Danio_rerio");
        push (@spec_array, "Dasypus_novemcinctus");
@@ -1333,6 +1339,7 @@ sub find_taxon {
                'Coffea_canephora', '49390',
                'Corchorus_capsularis', '210143',
                'Corchorus_olitorius', '93759',
+               'Cornus_florida', '4283',
                'Cucumis_sativus', '3659',
                'Danio_rerio', '7955',
                'Drosophila_melanogaster', '7227',