wip: generate_reactome_files option

svn path=/; revision=563

diff --git a/Personnel/preecej/python_singletons/incomparanoid.py b/Personnel/preecej/python_singletons/incomparanoid.py
index a2988049b6e4c2d0a91bc1523b682bcba1d302bf..15aca2205f320d2af78e1d580ddbe6efd46bc7b6 100755 (executable)
--- a/Personnel/preecej/python_singletons/incomparanoid.py
+++ b/Personnel/preecej/python_singletons/incomparanoid.py
@@ -295,6 +295,7 @@ parser.add_argument('-p', '--projection_prefix', help='add a platform-specific p
 parser.add_argument('-c', '--comparison_file_path', help='output file containing statistical comparisons')
 parser.add_argument('-E', '--ensembl_output_path', help='output file containing flat (1-to-many) ensemble ortho pairs')
 parser.add_argument('-I', '--inparanoid_output_path', help='output file containing flat (1-to-many) inparanoid ortho pairs')
+parser.add_argument('-g', '--generate_reactome_files', help='produce ortho_pair files required by Reactome projection inference script', action="store_true")
 
 args = parser.parse_args()
 #print args