Replaced annotations on seed shape (TO:0000484), moved to grain shape (TO:0002730...

svn path=/; revision=887

diff --git a/to-associations/to_gene_Oryza_Gramene.assoc b/to-associations/to_gene_Oryza_Gramene.assoc
index 32a03441c7d6a86a7c454ecae0cee8e03d6b35f0..0d6275afe6e12a8188bdd2f30dbb952c16dcd4dc 100644 (file)
--- a/to-associations/to_gene_Oryza_Gramene.assoc
+++ b/to-associations/to_gene_Oryza_Gramene.assoc
@@ -35,7 +35,7 @@ GR_gene       GR:0060235      DN1             TO:0000089      GR_REF:5797     IMP             T       DENSE PANICLE 1 Dn1|Dense
 GR_gene        GR:0060235      DN1             TO:0000142      GR_REF:5797     IMP             T       DENSE PANICLE 1 Dn1|Dense panicle-1|Dn1|Dense panicle-1 gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060236      DN2             TO:0000089      GR_REF:1801     IMP             T       DENSE PANICLE 2 Dn2|Dense panicle-2|Dn2|Dense panicle-2 gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060236      DN2             TO:0000339      GR_REF:1801     IMP             T       DENSE PANICLE 2 Dn2|Dense panicle-2|Dn2|Dense panicle-2 gene    taxon:4530      20121108        Gramene         
-GR_gene        GR:0060236      DN2             TO:0000484      GR_REF:1801     IMP             T       DENSE PANICLE 2 Dn2|Dense panicle-2|Dn2|Dense panicle-2 gene    taxon:4530      20121108        Gramene         
+GR_gene        GR:0060236      DN2             TO:0002730      GR_REF:1801     IMP             T       DENSE PANICLE 2 Dn2|Dense panicle-2|Dn2|Dense panicle-2 gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060236      DN2             TO:0000576      GR_REF:1801     IMP             T       DENSE PANICLE 2 Dn2|Dense panicle-2|Dn2|Dense panicle-2 gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060719      RA              TO:0000190      GR_REF:1512     IMP             T       TRANSCRIPTIONAL ACTIVATOR A     bhlh13|basic helix loop helix 13|OsbHLH013|OsbHLH13|Ra|Rice R gene (Anthocyanin biosynthesis)-a|Ra|Rice R gene (Anthocyanin biosynthesis)-a|LOC_Os04g47080      gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060719      RA              TO:0000487      GR_REF:1512     IMP             T       TRANSCRIPTIONAL ACTIVATOR A     bhlh13|basic helix loop helix 13|OsbHLH013|OsbHLH13|Ra|Rice R gene (Anthocyanin biosynthesis)-a|Ra|Rice R gene (Anthocyanin biosynthesis)-a|LOC_Os04g47080      gene    taxon:4530      20121108        Gramene         
@@ -83,7 +83,7 @@ GR_gene       GR:0060936      SL1             TO:0000437      GR_REF:6472     IMP             T       STAMENLESS 1    sl1|stl1|stam
 GR_gene        GR:0060936      SL1             TO:0000499      GR_REF:6472     IMP             T       STAMENLESS 1    sl1|stl1|stamenless-1|stl1|stamenless-1 gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060940      SUCINF          TO:0000035      GR_REF:6248     IMP             T       SUPPRESSOR FOR CROSS-INCOMPATIBILITY CINF       Su Cinf|Suppressor for cross-incompatibility (Cinf)|Su Cinf|Suppressor for cross-incompatibility (Cinf) gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060965      TRI             TO:0000079      GR_REF:1725     IMP             T       TRIANGULAR HULL tri|triangular hull|tri|triangular hull gene    taxon:4530      20121108        Gramene         
-GR_gene        GR:0060965      TRI             TO:0000484      GR_REF:1725     IMP             T       TRIANGULAR HULL tri|triangular hull|tri|triangular hull gene    taxon:4530      20121108        Gramene         
+GR_gene        GR:0060965      TRI             TO:0002730      GR_REF:1725     IMP             T       TRIANGULAR HULL tri|triangular hull|tri|triangular hull gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060987      V8              TO:0000373      GR_REF:5187     IMP             T       VIRESCENT 8     v8|virescent-8|v8|virescent-8   gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060987      V8              TO:0000495      GR_REF:5187     IMP             T       VIRESCENT 8     v8|virescent-8|v8|virescent-8   gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0061001      WH              TO:0000190      GR_REF:5666     IMP             T       WHITE HULL      Hw|Wh|White hull|Wh|White hull  gene    taxon:4530      20121108        Gramene         
@@ -166,7 +166,7 @@ GR_gene     GR:0060184      d1              TO:0000299      GR_REF:6145     IMP             T       dwarf-1 dwf1|daikoku dwarf|
 GR_gene        GR:0060184      d1              TO:0000326      GR_REF:6145     IMP             T       dwarf-1 dwf1|daikoku dwarf|G-protein alpha subunit|GA1|GP-alpha-1|Guanine nucleotide-binding protein alpha-1 subunit|RGA1|LOC_Os05g26890        gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060184      d1              TO:0000370      GR_REF:6145     IMP             T       dwarf-1 dwf1|daikoku dwarf|G-protein alpha subunit|GA1|GP-alpha-1|Guanine nucleotide-binding protein alpha-1 subunit|RGA1|LOC_Os05g26890        gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060184      d1              TO:0000391      GR_REF:6145     IMP             T       dwarf-1 dwf1|daikoku dwarf|G-protein alpha subunit|GA1|GP-alpha-1|Guanine nucleotide-binding protein alpha-1 subunit|RGA1|LOC_Os05g26890        gene    taxon:4530      20121108        Gramene         
-GR_gene        GR:0060184      d1              TO:0000484      GR_REF:6145     IMP             T       dwarf-1 dwf1|daikoku dwarf|G-protein alpha subunit|GA1|GP-alpha-1|Guanine nucleotide-binding protein alpha-1 subunit|RGA1|LOC_Os05g26890        gene    taxon:4530      20121108        Gramene         
+GR_gene        GR:0060184      d1              TO:0002730      GR_REF:6145     IMP             T       dwarf-1 dwf1|daikoku dwarf|G-protein alpha subunit|GA1|GP-alpha-1|Guanine nucleotide-binding protein alpha-1 subunit|RGA1|LOC_Os05g26890        gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060184      d1              TO:0000492      GR_REF:6145     IMP             T       dwarf-1 dwf1|daikoku dwarf|G-protein alpha subunit|GA1|GP-alpha-1|Guanine nucleotide-binding protein alpha-1 subunit|RGA1|LOC_Os05g26890        gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060184      d1              TO:0000576      GR_REF:6145     IMP             T       dwarf-1 dwf1|daikoku dwarf|G-protein alpha subunit|GA1|GP-alpha-1|Guanine nucleotide-binding protein alpha-1 subunit|RGA1|LOC_Os05g26890        gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060186      D3              TO:0000346      GR_REF:6242     IMP             T       DWARF BUNKETSUWAITO TILLERING   bungetsuwaito tillering dwarf|dwf3|d3|dwarf-3|d3|dwarf-3|LOC_Os06g06050 gene    taxon:4530      20121108        Gramene         
@@ -191,7 +191,7 @@ GR_gene     GR:0060200      D20             TO:0000089      GR_REF:5965     IMP             T       DWARF HAYAYUKI  dwf17|hayay
 GR_gene        GR:0060200      D20             TO:0000576      GR_REF:5965     IMP             T       DWARF HAYAYUKI  dwf17|hayayuki dwarf|d20|dwarf-20|d20|dwarf-20  gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060201      D21             TO:0000040      GR_REF:5703     IMP             T       DWARF AOMORIMOCHI 14    aomorimochi-14 dwarf|dwf18|d21|dwarf-21|d21|dwarf-21    gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060201      D21             TO:0000370      GR_REF:5703     IMP             T       DWARF AOMORIMOCHI 14    aomorimochi-14 dwarf|dwf18|d21|dwarf-21|d21|dwarf-21    gene    taxon:4530      20121108        Gramene         
-GR_gene        GR:0060201      D21             TO:0000484      GR_REF:5703     IMP             T       DWARF AOMORIMOCHI 14    aomorimochi-14 dwarf|dwf18|d21|dwarf-21|d21|dwarf-21    gene    taxon:4530      20121108        Gramene         
+GR_gene        GR:0060201      D21             TO:0002730      GR_REF:5703     IMP             T       DWARF AOMORIMOCHI 14    aomorimochi-14 dwarf|dwf18|d21|dwarf-21|d21|dwarf-21    gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060201      D21             TO:0000576      GR_REF:5703     IMP             T       DWARF AOMORIMOCHI 14    aomorimochi-14 dwarf|dwf18|d21|dwarf-21|d21|dwarf-21    gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060205      D26             TO:0000576      GR_REF:1508     IMP             T       DWARF 7237      dwf22|7237 dwarf|d26|dwarf-26|d26|dwarf-26      gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060206      D27             TO:0000346      GR_REF:6056     IMP             T       DWARF BUNKETSUTO TILLERING      dt|bungetsuto tillering dwarf|dwf23|d27|dwarf-27|d27|dwarf-27   gene    taxon:4530      20121108        Gramene         
@@ -203,17 +203,17 @@ GR_gene   GR:0060207      D28             TO:0000145      GR_REF:5654     IMP             T       DWARF CHOKEIDAIKOKU OR LON
 GR_gene        GR:0060207      D28             TO:0000299      GR_REF:5654     IMP             T       DWARF CHOKEIDAIKOKU OR LONG STEMMED     dwf24|chokeidaikoku or long stemmed dwarf|dC|d28|dwarf-28|d28|dwarf-28  gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060207      D28             TO:0000370      GR_REF:5654     IMP             T       DWARF CHOKEIDAIKOKU OR LONG STEMMED     dwf24|chokeidaikoku or long stemmed dwarf|dC|d28|dwarf-28|d28|dwarf-28  gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060207      D28             TO:0000391      GR_REF:5654     IMP             T       DWARF CHOKEIDAIKOKU OR LONG STEMMED     dwf24|chokeidaikoku or long stemmed dwarf|dC|d28|dwarf-28|d28|dwarf-28  gene    taxon:4530      20121108        Gramene         
-GR_gene        GR:0060207      D28             TO:0000484      GR_REF:5654     IMP             T       DWARF CHOKEIDAIKOKU OR LONG STEMMED     dwf24|chokeidaikoku or long stemmed dwarf|dC|d28|dwarf-28|d28|dwarf-28  gene    taxon:4530      20121108        Gramene         
+GR_gene        GR:0060207      D28             TO:0002730      GR_REF:5654     IMP             T       DWARF CHOKEIDAIKOKU OR LONG STEMMED     dwf24|chokeidaikoku or long stemmed dwarf|dC|d28|dwarf-28|d28|dwarf-28  gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060207      D28             TO:0000492      GR_REF:5654     IMP             T       DWARF CHOKEIDAIKOKU OR LONG STEMMED     dwf24|chokeidaikoku or long stemmed dwarf|dC|d28|dwarf-28|d28|dwarf-28  gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060207      D28             TO:0000576      GR_REF:5654     IMP             T       DWARF CHOKEIDAIKOKU OR LONG STEMMED     dwf24|chokeidaikoku or long stemmed dwarf|dC|d28|dwarf-28|d28|dwarf-28  gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060209      D30             TO:0000339      GR_REF:6056     IMP             T       DWARF WAISEISHIRASASA   dW|waiseishirazasa dwarf|dwf26|d30|dwarf-30|d30|dwarf-30        gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060209      D30             TO:0000391      GR_REF:6056     IMP             T       DWARF WAISEISHIRASASA   dW|waiseishirazasa dwarf|dwf26|d30|dwarf-30|d30|dwarf-30        gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060209      D30             TO:0000473      GR_REF:6056     IMP             T       DWARF WAISEISHIRASASA   dW|waiseishirazasa dwarf|dwf26|d30|dwarf-30|d30|dwarf-30        gene    taxon:4530      20121108        Gramene         
-GR_gene        GR:0060209      D30             TO:0000484      GR_REF:6056     IMP             T       DWARF WAISEISHIRASASA   dW|waiseishirazasa dwarf|dwf26|d30|dwarf-30|d30|dwarf-30        gene    taxon:4530      20121108        Gramene         
+GR_gene        GR:0060209      D30             TO:0002730      GR_REF:6056     IMP             T       DWARF WAISEISHIRASASA   dW|waiseishirazasa dwarf|dwf26|d30|dwarf-30|d30|dwarf-30        gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060209      D30             TO:0000492      GR_REF:6056     IMP             T       DWARF WAISEISHIRASASA   dW|waiseishirazasa dwarf|dwf26|d30|dwarf-30|d30|dwarf-30        gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060209      D30             TO:0000576      GR_REF:6056     IMP             T       DWARF WAISEISHIRASASA   dW|waiseishirazasa dwarf|dwf26|d30|dwarf-30|d30|dwarf-30        gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060211      D32             TO:0000427      GR_REF:5647     IMP             T       DWARF KYUSHU 4  d12|dwf28|dK4|dwarf Kyushu-4|d32|dwarf-32|d32|dwarf-32  gene    taxon:4530      20121108        Gramene         
-GR_gene        GR:0060211      D32             TO:0000484      GR_REF:5647     IMP             T       DWARF KYUSHU 4  d12|dwf28|dK4|dwarf Kyushu-4|d32|dwarf-32|d32|dwarf-32  gene    taxon:4530      20121108        Gramene         
+GR_gene        GR:0060211      D32             TO:0002730      GR_REF:5647     IMP             T       DWARF KYUSHU 4  d12|dwf28|dK4|dwarf Kyushu-4|d32|dwarf-32|d32|dwarf-32  gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060211      D32             TO:0000576      GR_REF:5647     IMP             T       DWARF KYUSHU 4  d12|dwf28|dK4|dwarf Kyushu-4|d32|dwarf-32|d32|dwarf-32  gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060214      D42             TO:0000235      GR_REF:1507     IMP             T       DWARF LIGULELESS        liguleless dwarf|d42|dwf31|d42|dwarf-42|d42|dwarf-42    gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060214      D42             TO:0000299      GR_REF:1507     IMP             T       DWARF LIGULELESS        liguleless dwarf|d42|dwf31|d42|dwarf-42|d42|dwarf-42    gene    taxon:4530      20121108        Gramene         
@@ -421,10 +421,10 @@ GR_gene   GR:0060210      D31             TO:0000370      GR_REF:5149     IMP             T       DWARF TAICHUNG 155 IRRADIA
 GR_gene        GR:0060210      D31             TO:0000576      GR_REF:5149     IMP             T       DWARF TAICHUNG 155 IRRADIATED   taichung-155-irradiated dwarf|dwf27|d31|dwarf-31|d31|dwarf-31   gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060238      DP1             TO:0000079      GR_REF:5883     IMP             T       DEPRESSED PALEA 1       pa|dp1|depressed palea-1|dp1|depressed palea-1  gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060238      DP1             TO:0000449      GR_REF:5883     IMP             T       DEPRESSED PALEA 1       pa|dp1|depressed palea-1|dp1|depressed palea-1  gene    taxon:4530      20121108        Gramene         
-GR_gene        GR:0060238      DP1             TO:0000484      GR_REF:5883     IMP             T       DEPRESSED PALEA 1       pa|dp1|depressed palea-1|dp1|depressed palea-1  gene    taxon:4530      20121108        Gramene         
+GR_gene        GR:0060238      DP1             TO:0002730      GR_REF:5883     IMP             T       DEPRESSED PALEA 1       pa|dp1|depressed palea-1|dp1|depressed palea-1  gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060240      DP              TO:0000079      GR_REF:2588     IMP             T       DEPRESSED PALEA dp(t)*|depressed palea|dp3|depressed palea-3|dp3|depressed palea-3      gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060240      DP              TO:0000436      GR_REF:2588     IMP             T       DEPRESSED PALEA dp(t)*|depressed palea|dp3|depressed palea-3|dp3|depressed palea-3      gene    taxon:4530      20121108        Gramene         
-GR_gene        GR:0060240      DP              TO:0000484      GR_REF:2588     IMP             T       DEPRESSED PALEA dp(t)*|depressed palea|dp3|depressed palea-3|dp3|depressed palea-3      gene    taxon:4530      20121108        Gramene         
+GR_gene        GR:0060240      DP              TO:0002730      GR_REF:2588     IMP             T       DEPRESSED PALEA dp(t)*|depressed palea|dp3|depressed palea-3|dp3|depressed palea-3      gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060496      LG              TO:0000024      GR_REF:2585     IMP             T       LIGULELESS      lg|liguleless|lg|liguleless     gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060570      NAL6            TO:0000370      GR_REF:5662     IMP             T       NARROW LEAF 6   Narrow leaf-6|Nal6|Cul6|Curl leaf-6|Cul6|Curl leaf-6    gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060570      NAL6            TO:0000492      GR_REF:5662     IMP             T       NARROW LEAF 6   Narrow leaf-6|Nal6|Cul6|Curl leaf-6|Cul6|Curl leaf-6    gene    taxon:4530      20121108        Gramene         
@@ -497,10 +497,10 @@ GR_gene   GR:0060192      D10             TO:0000576      GR_REF:5792     IMP             T       DWARF KIKEIBANSHINRIKI  kik
 GR_gene        GR:0060193      D11             TO:0000040      GR_REF:5792     IMP             T       DWARF SHINKANEAIKOKU OR NOHRIN 28       shinkaneaikoku or nohrin 28 dwarf|dwf10|d8|D11/CYP724B1|OsDWARF11|d11|dwarf-11|d11|dwarf-11|LOC_Os04g39430      gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060193      D11             TO:0000052      GR_REF:5792     IMP             T       DWARF SHINKANEAIKOKU OR NOHRIN 28       shinkaneaikoku or nohrin 28 dwarf|dwf10|d8|D11/CYP724B1|OsDWARF11|d11|dwarf-11|d11|dwarf-11|LOC_Os04g39430      gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060193      D11             TO:0000145      GR_REF:5792     IMP             T       DWARF SHINKANEAIKOKU OR NOHRIN 28       shinkaneaikoku or nohrin 28 dwarf|dwf10|d8|D11/CYP724B1|OsDWARF11|d11|dwarf-11|d11|dwarf-11|LOC_Os04g39430      gene    taxon:4530      20121108        Gramene         
-GR_gene        GR:0060193      D11             TO:0000484      GR_REF:5792     IMP             T       DWARF SHINKANEAIKOKU OR NOHRIN 28       shinkaneaikoku or nohrin 28 dwarf|dwf10|d8|D11/CYP724B1|OsDWARF11|d11|dwarf-11|d11|dwarf-11|LOC_Os04g39430      gene    taxon:4530      20121108        Gramene         
+GR_gene        GR:0060193      D11             TO:0002730      GR_REF:5792     IMP             T       DWARF SHINKANEAIKOKU OR NOHRIN 28       shinkaneaikoku or nohrin 28 dwarf|dwf10|d8|D11/CYP724B1|OsDWARF11|d11|dwarf-11|d11|dwarf-11|LOC_Os04g39430      gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060193      D11             TO:0000576      GR_REF:5792     IMP             T       DWARF SHINKANEAIKOKU OR NOHRIN 28       shinkaneaikoku or nohrin 28 dwarf|dwf10|d8|D11/CYP724B1|OsDWARF11|d11|dwarf-11|d11|dwarf-11|LOC_Os04g39430      gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060239      DP2             TO:0000079      GR_REF:5789     IMP             T       DEPRESSED PALEA 2       dp2|depressed palea-2|dp2|depressed palea-2     gene    taxon:4530      20121108        Gramene         
-GR_gene        GR:0060239      DP2             TO:0000484      GR_REF:5789     IMP             T       DEPRESSED PALEA 2       dp2|depressed palea-2|dp2|depressed palea-2     gene    taxon:4530      20121108        Gramene         
+GR_gene        GR:0060239      DP2             TO:0002730      GR_REF:5789     IMP             T       DEPRESSED PALEA 2       dp2|depressed palea-2|dp2|depressed palea-2     gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060239      DP2             TO:0000499      GR_REF:5789     IMP             T       DEPRESSED PALEA 2       dp2|depressed palea-2|dp2|depressed palea-2     gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060242      DRP2            TO:0000493      GR_REF:5824     IMP             T       DRIPPING-WET LEAF 2     drp2|dripping-wet leaf-2|drp2|dripping-wet leaf-2       gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060287      EG1             TO:0000079      GR_REF:5655     IMP             T       EXTRA GLUME 1   eg1|extra glume-1|eg1|extra glume-1     gene    taxon:4530      20121108        Gramene         
@@ -549,7 +549,7 @@ GR_gene     GR:0060489      KR2             TO:0000391      GR_REF:5859     IMP             T       LONG GRAIN      Kr2|Long grain|
 GR_gene        GR:0060492      LAM             TO:0000196      GR_REF:5694     IMP             T       LOW AMYLOSE ENDOSPERM   low allergenic protein|lam|low amylose endosperm|lam|low amylose endosperm      gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060492      LAM             TO:0000266      GR_REF:5694     IMP             T       LOW AMYLOSE ENDOSPERM   low allergenic protein|lam|low amylose endosperm|lam|low amylose endosperm      gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060499      LGT             TO:0000734      GR_REF:1504     IMP             T       LONG TWISTED GRAIN      lgt|long twisted grain|lgt|long twisted grain   gene    taxon:4530      20121108        Gramene         
-GR_gene        GR:0060499      LGT             TO:0000484      GR_REF:1504     IMP             T       LONG TWISTED GRAIN      lgt|long twisted grain|lgt|long twisted grain   gene    taxon:4530      20121108        Gramene         
+GR_gene        GR:0060499      LGT             TO:0002730      GR_REF:1504     IMP             T       LONG TWISTED GRAIN      lgt|long twisted grain|lgt|long twisted grain   gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060526      MIK             TO:0000089      GR_REF:6375     IMP             T       MICROSATELLITE-TARGETING TRANSPOSABLE ELEMENT   'Kitaake mutant' minute grain|mik|mi2|minute grain-2|mi2|minute grain-2 gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060526      MIK             TO:0000137      GR_REF:6375     IMP             T       MICROSATELLITE-TARGETING TRANSPOSABLE ELEMENT   'Kitaake mutant' minute grain|mik|mi2|minute grain-2|mi2|minute grain-2 gene    taxon:4530      20121108        Gramene         
 GR_gene        GR:0060526      MIK             TO:0000391      GR_REF:6375     IMP             T       MICROSATELLITE-TARGETING TRANSPOSABLE ELEMENT   'Kitaake mutant' minute grain|mik|mi2|minute grain-2|mi2|minute grain-2 gene    taxon:4530      20121108        Gramene         

diff --git a/to-associations/to_protein_Oryza_Gramene.assoc b/to-associations/to_protein_Oryza_Gramene.assoc
index cdaf493d0d40b890bda95d1cfc988d35ba44e430..8467c223aad2a80fbc4398eb662a8faf7e55c9e5 100644 (file)
--- a/to-associations/to_protein_Oryza_Gramene.assoc
+++ b/to-associations/to_protein_Oryza_Gramene.assoc
@@ -289,8 +289,8 @@ GR_protein  Q6ET36  CPS1            TO:0000357      GR_REF:11073    IC              T       Putative kaurene synthase
 GR_protein     Q6ET36  CPS1            TO:0000599      GR_REF:11073    IC              T       Putative kaurene synthase A     OsCPS1|P0444A09.11|Putative kaurene synthase A  protein taxon:39947     20060831        Gramene         
 GR_protein     Q6F4F5  CYP724B1                TO:0000145      GR_REF:11089    IC              T       Cytochrome P450 724B1   Dwarf protein 11|OsDWARF11      protein taxon:39947     20060831        Gramene         
 GR_protein     Q6F4F5  CYP724B1                TO:0000040      GR_REF:11089    IC              T       Cytochrome P450 724B1   Dwarf protein 11|OsDWARF11      protein taxon:39947     20060831        Gramene         
-GR_protein     Q6F4F5  CYP724B1                TO:0000484      GR_REF:11089    IC              T       Cytochrome P450 724B1   Dwarf protein 11|OsDWARF11      protein taxon:39947     20060831        Gramene         
-GR_protein     Q6F4F5  CYP724B1                TO:0000484      GR_REF:11418    IMP             T       Cytochrome P450 724B1   Dwarf protein 11|OsDWARF11      protein taxon:39947     20060831        Gramene         
+GR_protein     Q6F4F5  CYP724B1                TO:0002730      GR_REF:11089    IC              T       Cytochrome P450 724B1   Dwarf protein 11|OsDWARF11      protein taxon:39947     20060831        Gramene         
+GR_protein     Q6F4F5  CYP724B1                TO:0002730      GR_REF:11418    IMP             T       Cytochrome P450 724B1   Dwarf protein 11|OsDWARF11      protein taxon:39947     20060831        Gramene         
 GR_protein     Q6F4F5  CYP724B1                TO:0000576      GR_REF:11089    IC              T       Cytochrome P450 724B1   Dwarf protein 11|OsDWARF11      protein taxon:39947     20060831        Gramene         
 GR_protein     Q6F4F5  CYP724B1                TO:0000052      GR_REF:11089    IC              T       Cytochrome P450 724B1   Dwarf protein 11|OsDWARF11      protein taxon:39947     20060831        Gramene         
 GR_protein     Q66QH3  Q66QH3          TO:0000599      GR_REF:11089    IC              T       Syn-pimara-7,15-diene synthase          protein taxon:39946     20080220        Gramene         

diff --git a/to-associations/to_qtl_Gramene.assoc b/to-associations/to_qtl_Gramene.assoc
index 1e269cc9e4b0290b20eced45b1240bc2b12bea05..4938f92b7d0eb53e1f25684a90912c410d9e01b3 100644 (file)
--- a/to-associations/to_qtl_Gramene.assoc
+++ b/to-associations/to_qtl_Gramene.assoc
@@ -2687,7 +2687,7 @@ GR_QTL    AQEI070 LFSNS           TO:0000249      GR_REF:8186|PMID:14564397       IAGP            T       AQEI070 leaf
 GR_QTL AQFD014 TIBUDDOR                TO:0000661      GR_REF:8329|PMID:15221143       IAGP            T       AQFD014 tiller bud dormancy     QTL     taxon:4530      20121108        Gramene         
 GR_QTL AQDR113 TSDWT           TO:0000382      GR_REF:5355|PMID:9071598        IAGP            T       AQDR113 1000-seed weight        QTL     taxon:4530      20121108        Gramene         
 GR_QTL AQFS028 ANTCAB          TO:0000425      GR_REF:9403     IAGP            T       AQFS028 anther culturability|qanth11    QTL     taxon:4577      20121108        Gramene         
-GR_QTL AQCA016 SDSHP           TO:0000484      GR_REF:7834     IAGP            T       AQCA016 seed shape|gs3  QTL     taxon:4530      20121108        Gramene         
+GR_QTL AQCA016 SDSHP           TO:0002730      GR_REF:7834     IAGP            T       AQCA016 seed shape|gs3  QTL     taxon:4530      20121108        Gramene         
 GR_QTL AQFS972 DTSLK           TO:0000658      GR_REF:9456     IAGP            T       AQFS972 days to silk|qdsilk49   QTL     taxon:4577      20121108        Gramene         
 GR_QTL AQGI087 RTDWT           TO:0000078      GR_REF:11015|PMID:16189659      IAGP            T       AQGI087 root dry weight QTL     taxon:4530      20121108        Gramene         
 GR_QTL AQCU035 PNLG            TO:0000040      GR_REF:7971|PMID:12721635       IAGP            T       AQCU035 panicle length|QPl2     QTL     taxon:4530      20121108        Gramene         
@@ -5706,7 +5706,7 @@ GR_QTL    AQF027  SDDOR           TO:0000253      GR_REF:7750|PMID:12582574       IAGP            T       AQF027  seed do
 GR_QTL AQFH016 Hv_FUSHEADBTRS          TO:0000662      GR_REF:8361     IAGP            T       AQFH016 Barley fusarium head blight resistance|QFhs.umn-3H.2    QTL     taxon:4513      20121108        Gramene         
 GR_QTL AQEP014 SDLVIG          TO:0000280      GR_REF:5874     IAGP            T       AQEP014 seedling vigor  QTL     taxon:4530      20121108        Gramene         
 GR_QTL CQJ4    PNNB            TO:0000152      GR_REF:7818     IAGP            T       CQJ4    panicle number  QTL     taxon:4530      20121108        Gramene         
-GR_QTL AQCA010 SDSHP           TO:0000484      GR_REF:7834     IAGP            T       AQCA010 seed shape|gs5  QTL     taxon:4530      20121108        Gramene         
+GR_QTL AQCA010 SDSHP           TO:0002730      GR_REF:7834     IAGP            T       AQCA010 seed shape|gs5  QTL     taxon:4530      20121108        Gramene         
 GR_QTL AQFS1293        GRYLD           TO:0000396      GR_REF:9425     IAGP            T       AQFS1293        grain yield|qgyld12     QTL     taxon:4577      20121108        Gramene         
 GR_QTL AQER006 BRLG            TO:0000643      GR_REF:8257|PMID:12582601       IAGP            T       AQER006 bristle length  QTL     taxon:4543      20121108        Gramene         
 GR_QTL AQGI224 TBIOMYLD                TO:0000457      GR_REF:11015|PMID:16189659      IAGP            T       AQGI224 total biomass yield     QTL     taxon:4530      20121108        Gramene         
@@ -7795,7 +7795,7 @@ GR_QTL    AQEJ078 RTACT           TO:0000434      GR_REF:8185|PMID:14682238       IAGP            T       AQEJ078 root
 GR_QTL AQHH059 ELAB            TO:0000170      GR_REF:9753     IAGP            T       AQHH059 elongation ability      QTL     taxon:4530      20121108        Gramene         
 GR_QTL AQEI051 LFSNS           TO:0000249      GR_REF:8186|PMID:14564397       IAGP            T       AQEI051 leaf senescence QTL     taxon:4530      20121108        Gramene         
 GR_QTL AQGZ025 LFWP            TO:0000131      GR_REF:11298|PMID:15517148      IAGP            T       AQGZ025 leaf water potential|QOp.TaEr-3H.3      QTL     taxon:4513      20121108        Gramene         
-GR_QTL AQCA017 SDSHP           TO:0000484      GR_REF:7834     IAGP            T       AQCA017 seed shape|gs5  QTL     taxon:4530      20121108        Gramene         
+GR_QTL AQCA017 SDSHP           TO:0002730      GR_REF:7834     IAGP            T       AQCA017 seed shape|gs5  QTL     taxon:4530      20121108        Gramene         
 GR_QTL AQGM004 DTHD            TO:0000137      GR_REF:11119    IAGP            T       AQGM004 days to heading|qDTH-7  QTL     taxon:4530      20121108        Gramene         
 GR_QTL AQF131  PNBLBR          TO:0000545      GR_REF:7750|PMID:12582574       IAGP            T       AQF131  panicle base to lowest branch   QTL     taxon:4530      20121108        Gramene         
 GR_QTL AQAK025 TSDWT           TO:0000382      GR_REF:7743|PMID:12582891       IAGP            T       AQAK025 1000-seed weight|qTGWT-2-2      QTL     taxon:4530      20121108        Gramene         
@@ -9218,7 +9218,7 @@ GR_QTL    AQBX007 PNWT            TO:0000014      GR_REF:7926     IAGP            T       AQBX007 panicle weight|Pdw3-
 GR_QTL AQDQ065 PTHT            TO:0000207      GR_REF:5330     IAGP            T       AQDQ065 plant height|ph12       QTL     taxon:4530      20121108        Gramene         
 GR_QTL AQER007 TINB            TO:0000346      GR_REF:8257|PMID:12582601       IAGP            T       AQER007 tiller number   QTL     taxon:4543      20121108        Gramene         
 GR_QTL AQBB119 PTHT            TO:0000207      GR_REF:5361|PMID:9799277        IAGP            T       AQBB119 plant height|Ph4        QTL     taxon:4530      20121108        Gramene         
-GR_QTL AQCA009 SDSHP           TO:0000484      GR_REF:7834     IAGP            T       AQCA009 seed shape|gs3  QTL     taxon:4530      20121108        Gramene         
+GR_QTL AQCA009 SDSHP           TO:0002730      GR_REF:7834     IAGP            T       AQCA009 seed shape|gs3  QTL     taxon:4530      20121108        Gramene         
 GR_QTL AQGS033 GRYLD           TO:0000396      GR_REF:11110    IAGP            T       AQGS033 grain yield|yld1.1      QTL     taxon:4530      20121108        Gramene         
 GR_QTL AQFS1182        SDWT            TO:0000919      GR_REF:9419     IAGP            T       AQFS1182        seed weight|q300k9      QTL     taxon:4577      20121108        Gramene         
 GR_QTL AQDF320 VDSRS           TO:0000148      GR_REF:8027     IAGP            T       AQDF320 viral disease resistance|BYDV, KxO-6-b  QTL     taxon:4498      20121108        Gramene