now generates optional reactome projection output files

svn path=/; revision=567

diff --git a/Personnel/preecej/python_singletons/incomparanoid.py b/Personnel/preecej/python_singletons/incomparanoid.py
index 18576a6deb7d7f8252504383cf0330a58f82afe6..256b40d7b0f3f2a5efd2922c3f2f4edd07992f1d 100755 (executable)
--- a/Personnel/preecej/python_singletons/incomparanoid.py
+++ b/Personnel/preecej/python_singletons/incomparanoid.py
@@ -286,7 +286,7 @@ def write_reactome_files(dict_map, reactome_gene_protein_path, reactome_projecti
     REACTOME_GENE_PROTEIN_OUT_FILE = open(reactome_gene_protein_path,'w')
     REACTOME_PROJECTION_OUT_FILE = open(reactome_projection_path,'w')
     for k, v_list in sorted(dict_map.iteritems()) :
-        REACTOME_PROJECTION_OUT_FILE.write(k + "\t" + " ".join(v_list) + "\n")
+        REACTOME_PROJECTION_OUT_FILE.write(k + "\t" + " ".join(map(lambda x: x.replace(x, (projection_prefix if projection_prefix else "") + x), v_list)) + "\n")
         for v in v_list :
             if v not in val_set :
                 val_set.add(v)