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Fixed species names with dots or commas in names
author
elserj
<elserj@localhost>
Mon, 11 Aug 2014 18:03:41 +0000
(18:03 +0000)
committer
elserj
<elserj@localhost>
Mon, 11 Aug 2014 18:03:41 +0000
(18:03 +0000)
svn path=/; revision=580
interactome_scripts/species_tree_names_fix.pl
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diff --git
a/interactome_scripts/species_tree_names_fix.pl
b/interactome_scripts/species_tree_names_fix.pl
index 3e9060aba57cc4fae510a1d73911bd6287c3b332..37e316f3699d06b91b536f6e4a8eb403079a3d58 100755
(executable)
--- a/
interactome_scripts/species_tree_names_fix.pl
+++ b/
interactome_scripts/species_tree_names_fix.pl
@@
-30,7
+30,7
@@
while (<table_file>){
my ($spec_id,$spec_name) = split("\t",$line);
$spec_name =~ s/\.fasta//g;
$spec_name =~ s/\.fa//g;
- my ($spec_genus, $spec_species) = split(/[_
,.
]/,$spec_name);
+ my ($spec_genus, $spec_species) = split(/[_]/,$spec_name);
if (defined($spec_species)) {
$spec_name = $spec_genus . " " . $spec_species;
}else{