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Fixed species names with dots or commas in names
authorelserj <elserj@localhost>
Mon, 11 Aug 2014 18:03:41 +0000 (18:03 +0000)
committerelserj <elserj@localhost>
Mon, 11 Aug 2014 18:03:41 +0000 (18:03 +0000)
svn path=/; revision=580

interactome_scripts/species_tree_names_fix.pl

index 3e9060aba57cc4fae510a1d73911bd6287c3b332..37e316f3699d06b91b536f6e4a8eb403079a3d58 100755 (executable)
@@ -30,7 +30,7 @@ while (<table_file>){
        my ($spec_id,$spec_name) = split("\t",$line);
        $spec_name =~ s/\.fasta//g;
        $spec_name =~ s/\.fa//g;
-       my ($spec_genus, $spec_species) = split(/[_,.]/,$spec_name);
+       my ($spec_genus, $spec_species) = split(/[_]/,$spec_name);
        if (defined($spec_species)) {
                        $spec_name = $spec_genus . " " . $spec_species;
        }else{