interaction db stuff

svn path=/; revision=348

diff --git a/Personnel/athreyab/interaction_db/interaction.mwb b/Personnel/athreyab/interaction_db/interaction.mwb
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diff --git a/Personnel/athreyab/interaction_db/interaction.png b/Personnel/athreyab/interaction_db/interaction.png
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diff --git a/Personnel/athreyab/interaction_db/interaction.sql b/Personnel/athreyab/interaction_db/interaction.sql
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+++ b/Personnel/athreyab/interaction_db/interaction.sql
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+SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0;
+SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0;
+SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='TRADITIONAL';
+
+CREATE SCHEMA IF NOT EXISTS `image_annotation` DEFAULT CHARACTER SET latin1 ;
+CREATE SCHEMA IF NOT EXISTS `po_beta` DEFAULT CHARACTER SET latin1 ;
+USE `image_annotation` ;
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`species`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`species` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`species` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `ncbi_taxa_id` INT(11) NULL DEFAULT NULL ,
+  `common_name` VARCHAR(255) NULL DEFAULT NULL ,
+  `lineage_string` TEXT NULL DEFAULT NULL ,
+  `genus` VARCHAR(55) NULL DEFAULT NULL ,
+  `species` VARCHAR(255) NULL DEFAULT NULL ,
+  `parent_id` INT(11) NULL DEFAULT NULL ,
+  `left_value` INT(11) NULL DEFAULT NULL ,
+  `right_value` INT(11) NULL DEFAULT NULL ,
+  `taxonomic_rank` VARCHAR(255) NULL DEFAULT NULL ,
+  PRIMARY KEY (`id`) ,
+  UNIQUE INDEX `sp0` (`id` ASC) ,
+  UNIQUE INDEX `ncbi_taxa_id` (`ncbi_taxa_id` ASC) ,
+  INDEX `sp1` (`ncbi_taxa_id` ASC) ,
+  INDEX `sp2` (`common_name` ASC) ,
+  INDEX `sp3` (`genus` ASC) ,
+  INDEX `sp4` (`species` ASC) ,
+  INDEX `sp5` (`genus` ASC, `species` ASC) ,
+  INDEX `sp6` (`id` ASC, `ncbi_taxa_id` ASC) ,
+  INDEX `sp7` (`id` ASC, `ncbi_taxa_id` ASC, `genus` ASC, `species` ASC) ,
+  INDEX `sp8` (`parent_id` ASC) ,
+  INDEX `sp9` (`left_value` ASC) ,
+  INDEX `sp10` (`right_value` ASC) ,
+  INDEX `sp11` (`left_value` ASC, `right_value` ASC) ,
+  INDEX `sp12` (`id` ASC, `left_value` ASC) )
+ENGINE = MyISAM
+AUTO_INCREMENT = 23
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `image_annotation`.`Species_map`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `image_annotation`.`Species_map` ;
+
+CREATE  TABLE IF NOT EXISTS `image_annotation`.`Species_map` (
+  `ubio_id` INT(11) NOT NULL ,
+  `po_species_id` INT(11) NOT NULL ,
+  PRIMARY KEY (`ubio_id`) ,
+  INDEX `fk_Species_map_1` (`po_species_id` ASC) ,
+  CONSTRAINT `fk_Species_map_1`
+    FOREIGN KEY (`po_species_id` )
+    REFERENCES `po_beta`.`species` (`id` )
+    ON DELETE NO ACTION
+    ON UPDATE NO ACTION)
+ENGINE = InnoDB
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `image_annotation`.`Annotated_term_type`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `image_annotation`.`Annotated_term_type` ;
+
+CREATE  TABLE IF NOT EXISTS `image_annotation`.`Annotated_term_type` (
+  `annotated_term_type_id` INT(11) NOT NULL ,
+  `annotated_term_type` VARCHAR(45) NULL DEFAULT NULL ,
+  PRIMARY KEY (`annotated_term_type_id`) )
+ENGINE = InnoDB
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`term`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`term` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`term` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `name` VARCHAR(255) NOT NULL ,
+  `term_type` VARCHAR(55) NOT NULL ,
+  `acc` VARCHAR(255) NOT NULL ,
+  `is_obsolete` INT(11) NOT NULL DEFAULT '0' ,
+  `is_root` INT(11) NOT NULL DEFAULT '0' ,
+  PRIMARY KEY (`id`) ,
+  UNIQUE INDEX `acc` (`acc` ASC) ,
+  UNIQUE INDEX `t0` (`id` ASC) ,
+  INDEX `t1` (`name` ASC) ,
+  INDEX `t2` (`term_type` ASC) ,
+  INDEX `t3` (`acc` ASC) )
+ENGINE = MyISAM
+AUTO_INCREMENT = 1642
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `image_annotation`.`Annotated_term`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `image_annotation`.`Annotated_term` ;
+
+CREATE  TABLE IF NOT EXISTS `image_annotation`.`Annotated_term` (
+  `annotated_term_id` INT(11) NOT NULL ,
+  `annotated_term` VARCHAR(45) NULL DEFAULT NULL ,
+  `annotated_term_type_id` INT(11) NULL DEFAULT NULL ,
+  `po_term_id` INT(11) NULL DEFAULT NULL ,
+  PRIMARY KEY (`annotated_term_id`) ,
+  INDEX `fk_Annotated Term_1` (`annotated_term_type_id` ASC) ,
+  INDEX `fk_Annotated_term_2` (`po_term_id` ASC) ,
+  CONSTRAINT `fk_Annotated Term_1`
+    FOREIGN KEY (`annotated_term_type_id` )
+    REFERENCES `image_annotation`.`Annotated_term_type` (`annotated_term_type_id` )
+    ON DELETE NO ACTION
+    ON UPDATE NO ACTION,
+  CONSTRAINT `fk_Annotated_term_2`
+    FOREIGN KEY (`po_term_id` )
+    REFERENCES `po_beta`.`term` (`id` )
+    ON DELETE NO ACTION
+    ON UPDATE NO ACTION)
+ENGINE = InnoDB
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `image_annotation`.`Annotated_image`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `image_annotation`.`Annotated_image` ;
+
+CREATE  TABLE IF NOT EXISTS `image_annotation`.`Annotated_image` (
+  `annotated_image_id` INT(11) NOT NULL ,
+  `image_path` VARCHAR(255) NULL DEFAULT NULL ,
+  `curator` VARCHAR(45) NULL DEFAULT NULL ,
+  `comments` VARCHAR(45) NULL DEFAULT NULL ,
+  `annotated_keywordlist_id` INT(11) NULL DEFAULT NULL ,
+  `annotated_term_id` INT(11) NULL DEFAULT NULL ,
+  `ubio_id` INT(11) NULL DEFAULT NULL ,
+  `ubio_name` VARCHAR(45) NULL DEFAULT NULL ,
+  `species_name` VARCHAR(45) NULL DEFAULT NULL ,
+  PRIMARY KEY (`annotated_image_id`) ,
+  INDEX `fk_Annotated_image_1` (`ubio_id` ASC) ,
+  INDEX `fk_Annotated_image_3` (`annotated_term_id` ASC) ,
+  CONSTRAINT `fk_Annotated_image_1`
+    FOREIGN KEY (`ubio_id` )
+    REFERENCES `image_annotation`.`Species_map` (`ubio_id` )
+    ON DELETE NO ACTION
+    ON UPDATE NO ACTION,
+  CONSTRAINT `fk_Annotated_image_3`
+    FOREIGN KEY (`annotated_term_id` )
+    REFERENCES `image_annotation`.`Annotated_term` (`annotated_term_id` )
+    ON DELETE NO ACTION
+    ON UPDATE NO ACTION)
+ENGINE = InnoDB
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `image_annotation`.`Annotated_keyword`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `image_annotation`.`Annotated_keyword` ;
+
+CREATE  TABLE IF NOT EXISTS `image_annotation`.`Annotated_keyword` (
+  `annotated_keyword_id` INT(11) NOT NULL ,
+  `annotated_keyword` VARCHAR(45) NULL DEFAULT NULL ,
+  PRIMARY KEY (`annotated_keyword_id`) )
+ENGINE = InnoDB
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `image_annotation`.`Annotated_keywordlist`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `image_annotation`.`Annotated_keywordlist` ;
+
+CREATE  TABLE IF NOT EXISTS `image_annotation`.`Annotated_keywordlist` (
+  `annotated_image_id` INT(11) NOT NULL ,
+  `annotated_keyword_id` INT(11) NOT NULL ,
+  PRIMARY KEY (`annotated_image_id`, `annotated_keyword_id`) ,
+  INDEX `fk_Annotated_keywordlist_1` (`annotated_image_id` ASC) ,
+  INDEX `fk_Annotated_keywordlist_2` (`annotated_keyword_id` ASC) ,
+  CONSTRAINT `fk_Annotated_keywordlist_1`
+    FOREIGN KEY (`annotated_image_id` )
+    REFERENCES `image_annotation`.`Annotated_image` (`annotated_image_id` )
+    ON DELETE NO ACTION
+    ON UPDATE NO ACTION,
+  CONSTRAINT `fk_Annotated_keywordlist_2`
+    FOREIGN KEY (`annotated_keyword_id` )
+    REFERENCES `image_annotation`.`Annotated_keyword` (`annotated_keyword_id` )
+    ON DELETE NO ACTION
+    ON UPDATE NO ACTION)
+ENGINE = InnoDB
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `image_annotation`.`Segment`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `image_annotation`.`Segment` ;
+
+CREATE  TABLE IF NOT EXISTS `image_annotation`.`Segment` (
+  `segment_id` INT(11) NOT NULL ,
+  `color` VARCHAR(45) NULL DEFAULT NULL ,
+  `annotated_image_id` INT(11) NULL DEFAULT NULL ,
+  `byte_mask` BLOB NULL DEFAULT NULL ,
+  `coordinates` LINESTRING NULL DEFAULT NULL ,
+  `annotated_term_id` INT(11) NULL DEFAULT NULL ,
+  PRIMARY KEY (`segment_id`) ,
+  INDEX `fk_Segment_2` (`annotated_term_id` ASC) ,
+  INDEX `fk_Segment_1` (`annotated_image_id` ASC) ,
+  CONSTRAINT `fk_Segment_1`
+    FOREIGN KEY (`annotated_image_id` )
+    REFERENCES `image_annotation`.`Annotated_image` (`annotated_image_id` )
+    ON DELETE NO ACTION
+    ON UPDATE NO ACTION,
+  CONSTRAINT `fk_Segment_2`
+    FOREIGN KEY (`annotated_term_id` )
+    REFERENCES `image_annotation`.`Annotated_term` (`annotated_term_id` )
+    ON DELETE NO ACTION
+    ON UPDATE NO ACTION)
+ENGINE = InnoDB
+DEFAULT CHARACTER SET = latin1;
+
+USE `po_beta` ;
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`assoc_rel`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`assoc_rel` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`assoc_rel` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `from_id` INT(11) NOT NULL ,
+  `to_id` INT(11) NOT NULL ,
+  `relationship_type_id` INT(11) NOT NULL ,
+  PRIMARY KEY (`id`) ,
+  INDEX `from_id` (`from_id` ASC) ,
+  INDEX `to_id` (`to_id` ASC) ,
+  INDEX `relationship_type_id` (`relationship_type_id` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`association`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`association` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`association` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `term_id` INT(11) NOT NULL ,
+  `gene_product_id` INT(11) NOT NULL ,
+  `is_not` INT(11) NULL DEFAULT NULL ,
+  `role_group` INT(11) NULL DEFAULT NULL ,
+  `assocdate` INT(11) NULL DEFAULT NULL ,
+  `source_db_id` INT(11) NULL DEFAULT NULL ,
+  PRIMARY KEY (`id`) ,
+  UNIQUE INDEX `a0` (`id` ASC) ,
+  INDEX `source_db_id` (`source_db_id` ASC) ,
+  INDEX `a1` (`term_id` ASC) ,
+  INDEX `a2` (`gene_product_id` ASC) ,
+  INDEX `a3` (`term_id` ASC, `gene_product_id` ASC) ,
+  INDEX `a4` (`id` ASC, `term_id` ASC, `gene_product_id` ASC) ,
+  INDEX `a5` (`id` ASC, `gene_product_id` ASC) )
+ENGINE = MyISAM
+AUTO_INCREMENT = 2175695
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`association_property`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`association_property` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`association_property` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `association_id` INT(11) NOT NULL ,
+  `relationship_type_id` INT(11) NOT NULL ,
+  `term_id` INT(11) NOT NULL ,
+  PRIMARY KEY (`id`) ,
+  INDEX `association_id` (`association_id` ASC) ,
+  INDEX `relationship_type_id` (`relationship_type_id` ASC) ,
+  INDEX `term_id` (`term_id` ASC) )
+ENGINE = MyISAM
+AUTO_INCREMENT = 200096
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`association_qualifier`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`association_qualifier` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`association_qualifier` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `association_id` INT(11) NOT NULL ,
+  `term_id` INT(11) NOT NULL ,
+  `value` VARCHAR(255) NULL DEFAULT NULL ,
+  PRIMARY KEY (`id`) ,
+  INDEX `term_id` (`term_id` ASC) ,
+  INDEX `aq1` (`association_id` ASC, `term_id` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`association_species_qualifier`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`association_species_qualifier` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`association_species_qualifier` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `association_id` INT(11) NOT NULL ,
+  `species_id` INT(11) NULL DEFAULT NULL ,
+  PRIMARY KEY (`id`) ,
+  INDEX `association_id` (`association_id` ASC) ,
+  INDEX `species_id` (`species_id` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`db`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`db` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`db` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `name` VARCHAR(55) NULL DEFAULT NULL ,
+  `fullname` VARCHAR(255) NULL DEFAULT NULL ,
+  `datatype` VARCHAR(255) NULL DEFAULT NULL ,
+  `generic_url` VARCHAR(255) NULL DEFAULT NULL ,
+  `url_syntax` VARCHAR(255) NULL DEFAULT NULL ,
+  `url_example` VARCHAR(255) NULL DEFAULT NULL ,
+  `uri_prefix` VARCHAR(255) NULL DEFAULT NULL ,
+  PRIMARY KEY (`id`) ,
+  UNIQUE INDEX `db0` (`id` ASC) ,
+  UNIQUE INDEX `name` (`name` ASC) ,
+  INDEX `db1` (`name` ASC) ,
+  INDEX `db2` (`fullname` ASC) ,
+  INDEX `db3` (`datatype` ASC) )
+ENGINE = MyISAM
+AUTO_INCREMENT = 12
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`dbxref`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`dbxref` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`dbxref` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `xref_dbname` VARCHAR(55) NOT NULL ,
+  `xref_key` VARCHAR(255) NOT NULL ,
+  `xref_keytype` VARCHAR(32) NULL DEFAULT NULL ,
+  `xref_desc` VARCHAR(255) NULL DEFAULT NULL ,
+  `exist_in_go` INT(11) NULL DEFAULT '0' ,
+  `go_id` VARCHAR(255) NULL DEFAULT NULL ,
+  PRIMARY KEY (`id`) ,
+  UNIQUE INDEX `xref_key` (`xref_key` ASC, `xref_dbname` ASC) ,
+  UNIQUE INDEX `dx0` (`id` ASC) ,
+  INDEX `dx1` (`xref_dbname` ASC) ,
+  INDEX `dx2` (`xref_key` ASC) ,
+  INDEX `dx3` (`id` ASC, `xref_dbname` ASC) ,
+  INDEX `dx4` (`id` ASC, `xref_key` ASC, `xref_dbname` ASC) ,
+  INDEX `dx5` (`id` ASC, `xref_key` ASC) )
+ENGINE = MyISAM
+AUTO_INCREMENT = 143140
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`evidence`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`evidence` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`evidence` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `code` VARCHAR(8) NOT NULL ,
+  `association_id` INT(11) NOT NULL ,
+  `dbxref_id` INT(11) NOT NULL ,
+  `seq_acc` VARCHAR(255) NULL DEFAULT NULL ,
+  PRIMARY KEY (`id`) ,
+  UNIQUE INDEX `association_id` (`association_id` ASC, `dbxref_id` ASC, `code` ASC) ,
+  UNIQUE INDEX `ev0` (`id` ASC) ,
+  INDEX `ev1` (`association_id` ASC) ,
+  INDEX `ev2` (`code` ASC) ,
+  INDEX `ev3` (`dbxref_id` ASC) ,
+  INDEX `ev4` (`association_id` ASC, `code` ASC) ,
+  INDEX `ev5` (`id` ASC, `association_id` ASC) )
+ENGINE = MyISAM
+AUTO_INCREMENT = 2175857
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`evidence_dbxref`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`evidence_dbxref` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`evidence_dbxref` (
+  `evidence_id` INT(11) NOT NULL ,
+  `dbxref_id` INT(11) NOT NULL ,
+  INDEX `evx1` (`evidence_id` ASC) ,
+  INDEX `evx2` (`dbxref_id` ASC) ,
+  INDEX `evx3` (`evidence_id` ASC, `dbxref_id` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`gene_product`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`gene_product` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`gene_product` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `symbol` VARCHAR(128) NOT NULL ,
+  `dbxref_id` INT(11) NOT NULL ,
+  `species_id` INT(11) NULL DEFAULT NULL ,
+  `type_id` INT(11) NULL DEFAULT NULL ,
+  `full_name` TEXT NULL DEFAULT NULL ,
+  PRIMARY KEY (`id`) ,
+  UNIQUE INDEX `dbxref_id` (`dbxref_id` ASC) ,
+  UNIQUE INDEX `g0` (`id` ASC) ,
+  INDEX `type_id` (`type_id` ASC) ,
+  INDEX `g1` (`symbol` ASC) ,
+  INDEX `g2` (`dbxref_id` ASC) ,
+  INDEX `g3` (`species_id` ASC) ,
+  INDEX `g4` (`id` ASC, `species_id` ASC) ,
+  INDEX `g5` (`dbxref_id` ASC, `species_id` ASC) ,
+  INDEX `g6` (`id` ASC, `dbxref_id` ASC) ,
+  INDEX `g7` (`id` ASC, `species_id` ASC) )
+ENGINE = MyISAM
+AUTO_INCREMENT = 110951
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`gene_product_count`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`gene_product_count` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`gene_product_count` (
+  `term_id` INT(11) NOT NULL ,
+  `code` VARCHAR(8) NULL DEFAULT NULL ,
+  `speciesdbname` VARCHAR(55) NULL DEFAULT NULL ,
+  `species_id` INT(11) NULL DEFAULT NULL ,
+  `product_count` INT(11) NOT NULL ,
+  INDEX `species_id` (`species_id` ASC) ,
+  INDEX `gpc1` (`term_id` ASC) ,
+  INDEX `gpc2` (`code` ASC) ,
+  INDEX `gpc3` (`speciesdbname` ASC) ,
+  INDEX `gpc4` (`term_id` ASC, `code` ASC, `speciesdbname` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`gene_product_property`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`gene_product_property` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`gene_product_property` (
+  `gene_product_id` INT(11) NOT NULL ,
+  `property_key` VARCHAR(64) NOT NULL ,
+  `property_val` VARCHAR(255) NULL DEFAULT NULL ,
+  UNIQUE INDEX `gppu4` (`gene_product_id` ASC, `property_key` ASC, `property_val` ASC) ,
+  INDEX `gpp1` (`gene_product_id` ASC) ,
+  INDEX `gpp2` (`property_key` ASC) ,
+  INDEX `gpp3` (`property_val` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`gene_product_seq`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`gene_product_seq` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`gene_product_seq` (
+  `gene_product_id` INT(11) NOT NULL ,
+  `seq_id` INT(11) NOT NULL ,
+  `is_primary_seq` INT(11) NULL DEFAULT NULL ,
+  INDEX `gpseq1` (`gene_product_id` ASC) ,
+  INDEX `gpseq2` (`seq_id` ASC) ,
+  INDEX `gpseq3` (`seq_id` ASC, `gene_product_id` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`gene_product_synonym`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`gene_product_synonym` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`gene_product_synonym` (
+  `gene_product_id` INT(11) NOT NULL ,
+  `product_synonym` VARCHAR(255) NOT NULL ,
+  UNIQUE INDEX `gene_product_id` (`gene_product_id` ASC, `product_synonym` ASC) ,
+  INDEX `gs1` (`gene_product_id` ASC) ,
+  INDEX `gs2` (`product_synonym` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`graph_path`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`graph_path` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`graph_path` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `term1_id` INT(11) NOT NULL ,
+  `term2_id` INT(11) NOT NULL ,
+  `distance` INT(11) NOT NULL ,
+  PRIMARY KEY (`id`) ,
+  UNIQUE INDEX `graph_path0` (`id` ASC) ,
+  INDEX `graph_path1` (`term1_id` ASC) ,
+  INDEX `graph_path2` (`term2_id` ASC) ,
+  INDEX `graph_path3` (`term1_id` ASC, `term2_id` ASC) ,
+  INDEX `graph_path4` (`term1_id` ASC, `distance` ASC) )
+ENGINE = MyISAM
+AUTO_INCREMENT = 65626
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`graph_path2term`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`graph_path2term` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`graph_path2term` (
+  `graph_path_id` INT(11) NOT NULL ,
+  `term_id` INT(11) NOT NULL ,
+  `rank` INT(11) NOT NULL ,
+  INDEX `graph_path_id` (`graph_path_id` ASC) ,
+  INDEX `term_id` (`term_id` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`instance_data`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`instance_data` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`instance_data` (
+  `release_name` VARCHAR(255) NULL DEFAULT NULL ,
+  `release_type` VARCHAR(255) NULL DEFAULT NULL ,
+  `release_notes` TEXT NULL DEFAULT NULL ,
+  UNIQUE INDEX `release_name` (`release_name` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`seq`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`seq` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`seq` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `display_id` VARCHAR(64) NULL DEFAULT NULL ,
+  `description` VARCHAR(255) NULL DEFAULT NULL ,
+  `seq` MEDIUMTEXT NULL DEFAULT NULL ,
+  `seq_len` INT(11) NULL DEFAULT NULL ,
+  `md5checksum` VARCHAR(32) NULL DEFAULT NULL ,
+  `moltype` VARCHAR(25) NULL DEFAULT NULL ,
+  `timestamp` INT(11) NULL DEFAULT NULL ,
+  PRIMARY KEY (`id`) ,
+  UNIQUE INDEX `seq0` (`id` ASC) ,
+  UNIQUE INDEX `display_id` (`display_id` ASC, `md5checksum` ASC) ,
+  INDEX `seq1` (`display_id` ASC) ,
+  INDEX `seq2` (`md5checksum` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`seq_dbxref`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`seq_dbxref` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`seq_dbxref` (
+  `seq_id` INT(11) NOT NULL ,
+  `dbxref_id` INT(11) NOT NULL ,
+  UNIQUE INDEX `seq_id` (`seq_id` ASC, `dbxref_id` ASC) ,
+  INDEX `seqx0` (`seq_id` ASC) ,
+  INDEX `seqx1` (`dbxref_id` ASC) ,
+  INDEX `seqx2` (`seq_id` ASC, `dbxref_id` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`seq_property`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`seq_property` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`seq_property` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `seq_id` INT(11) NOT NULL ,
+  `property_key` VARCHAR(64) NOT NULL ,
+  `property_val` VARCHAR(255) NOT NULL ,
+  PRIMARY KEY (`id`) ,
+  UNIQUE INDEX `seq_id` (`seq_id` ASC, `property_key` ASC, `property_val` ASC) ,
+  INDEX `seqp0` (`seq_id` ASC) ,
+  INDEX `seqp1` (`property_key` ASC) ,
+  INDEX `seqp2` (`property_val` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`source_audit`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`source_audit` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`source_audit` (
+  `source_id` VARCHAR(255) NULL DEFAULT NULL ,
+  `source_fullpath` VARCHAR(255) NULL DEFAULT NULL ,
+  `source_path` VARCHAR(255) NULL DEFAULT NULL ,
+  `source_type` VARCHAR(255) NULL DEFAULT NULL ,
+  `source_md5` CHAR(32) NULL DEFAULT NULL ,
+  `source_parsetime` INT(11) NULL DEFAULT NULL ,
+  `source_mtime` INT(11) NULL DEFAULT NULL ,
+  INDEX `fa1` (`source_path` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`term2term`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`term2term` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`term2term` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `relationship_type_id` INT(11) NOT NULL ,
+  `term1_id` INT(11) NOT NULL ,
+  `term2_id` INT(11) NOT NULL ,
+  `complete` INT(11) NOT NULL ,
+  PRIMARY KEY (`id`) ,
+  UNIQUE INDEX `term1_id` (`term1_id` ASC, `term2_id` ASC, `relationship_type_id` ASC, `complete` ASC) ,
+  INDEX `tt1` (`term1_id` ASC) ,
+  INDEX `tt2` (`term2_id` ASC) ,
+  INDEX `tt3` (`term1_id` ASC, `term2_id` ASC) ,
+  INDEX `tt4` (`relationship_type_id` ASC) )
+ENGINE = MyISAM
+AUTO_INCREMENT = 2756
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`term2term_metadata`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`term2term_metadata` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`term2term_metadata` (
+  `id` INT(11) NOT NULL AUTO_INCREMENT ,
+  `relationship_type_id` INT(11) NOT NULL ,
+  `term1_id` INT(11) NOT NULL ,
+  `term2_id` INT(11) NOT NULL ,
+  PRIMARY KEY (`id`) ,
+  UNIQUE INDEX `term1_id` (`term1_id` ASC, `term2_id` ASC) ,
+  INDEX `relationship_type_id` (`relationship_type_id` ASC) ,
+  INDEX `term2_id` (`term2_id` ASC) )
+ENGINE = MyISAM
+AUTO_INCREMENT = 61
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`term_audit`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`term_audit` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`term_audit` (
+  `term_id` INT(11) NOT NULL ,
+  `term_loadtime` INT(11) NULL DEFAULT NULL ,
+  UNIQUE INDEX `term_id` (`term_id` ASC) ,
+  INDEX `ta1` (`term_id` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`term_dbxref`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`term_dbxref` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`term_dbxref` (
+  `term_id` INT(11) NOT NULL ,
+  `dbxref_id` INT(11) NOT NULL ,
+  `is_for_definition` INT(11) NOT NULL DEFAULT '0' ,
+  UNIQUE INDEX `term_id` (`term_id` ASC, `dbxref_id` ASC, `is_for_definition` ASC) ,
+  INDEX `tx0` (`term_id` ASC) ,
+  INDEX `tx1` (`dbxref_id` ASC) ,
+  INDEX `tx2` (`term_id` ASC, `dbxref_id` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`term_definition`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`term_definition` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`term_definition` (
+  `term_id` INT(11) NOT NULL ,
+  `term_definition` TEXT NOT NULL ,
+  `dbxref_id` INT(11) NULL DEFAULT NULL ,
+  `term_comment` MEDIUMTEXT NULL DEFAULT NULL ,
+  `reference` VARCHAR(255) NULL DEFAULT NULL ,
+  UNIQUE INDEX `term_id` (`term_id` ASC) ,
+  INDEX `dbxref_id` (`dbxref_id` ASC) ,
+  INDEX `td1` (`term_id` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`term_property`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`term_property` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`term_property` (
+  `term_id` INT(11) NOT NULL ,
+  `property_key` VARCHAR(64) NOT NULL ,
+  `property_val` VARCHAR(255) NULL DEFAULT NULL ,
+  INDEX `term_id` (`term_id` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`term_subset`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`term_subset` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`term_subset` (
+  `term_id` INT(11) NOT NULL ,
+  `subset_id` INT(11) NOT NULL ,
+  INDEX `tss1` (`term_id` ASC) ,
+  INDEX `tss2` (`subset_id` ASC) ,
+  INDEX `tss3` (`term_id` ASC, `subset_id` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+-- -----------------------------------------------------
+-- Table `po_beta`.`term_synonym`
+-- -----------------------------------------------------
+DROP TABLE IF EXISTS `po_beta`.`term_synonym` ;
+
+CREATE  TABLE IF NOT EXISTS `po_beta`.`term_synonym` (
+  `term_id` INT(11) NOT NULL ,
+  `term_synonym` VARCHAR(255) NULL DEFAULT NULL ,
+  `acc_synonym` VARCHAR(255) NULL DEFAULT NULL ,
+  `synonym_type_id` INT(11) NOT NULL ,
+  UNIQUE INDEX `term_id` (`term_id` ASC, `term_synonym` ASC) ,
+  INDEX `synonym_type_id` (`synonym_type_id` ASC) ,
+  INDEX `ts1` (`term_id` ASC) ,
+  INDEX `ts2` (`term_synonym` ASC) ,
+  INDEX `ts3` (`term_id` ASC, `term_synonym` ASC) )
+ENGINE = MyISAM
+DEFAULT CHARACTER SET = latin1;
+
+
+
+SET SQL_MODE=@OLD_SQL_MODE;
+SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS;
+SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS;
+