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<center><h1>Plant Metabolic Pathways</h1></center>\r
<p></p>\r
- <table align="center" border="0" cellpadding="2" cellspacing="2" height="360" width="90%">\r
+ <table align="center" border="1" cellpadding="2" cellspacing="2" height="360" width="80%" bgcolor="#E1EDCF">\r
\r
<tr class="searchbody">\r
-<td valign="top" width="32%"><b>RiceCyc</b> ver 3.3 <b><img alt="" src="http://archive.gramene.org/pathway/ricecyc.gif" align="right" height="40" width="84" /></b><i><br />\r
+<td valign="top" width="32%"><b>RiceCyc</b> ver 3.3 <b><img alt="" src="http://pathways.cgrb.oregonstate.edu/img/ricecyc.gif" align="right" height="40" width="84" /></b><i><br />\r
Oryza sativa japonica</i> <br />\r
Strain: Nipponbare<br /><a href="http://palea.cgrb.oregonstate.edu:1555/RICE/class-tree?object=Pathways">Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/RICE/organism-summary?">Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/ricecyc.shtml">More info</a><br />\r
</td>\r
-<td valign="top" width="32%"><b>AraCyc*</b> ver 10.0 <img alt="" src="http://archive.gramene.org/pathway/aracyc_logo.gif" align="right" height="38" width="65" /><br />\r
+<td valign="top" width="32%"><b>AraCyc*</b> ver 10.0 <img alt="" src="http://pathways.cgrb.oregonstate.edu/img/aracyc_logo.gif" align="right" height="38" width="65" /><br />\r
<i>Arabidopsis thaliana</i> <br />\r
Strain: Columbia<br /> <a href="http://palea.cgrb.oregonstate.edu:1555/ARA/class-tree?object=Pathways">Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/ARA/organism-summary?">Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/aracyc.shtml">More info</a><br />\r
</td>\r
-<td valign="top" width="35%"><b>EcoCyc*</b> ver 17.0 <img alt="" src="http://archive.gramene.org/pathway/EcoCyc.gif" align="right" height="40" width="125" /><br />\r
+<td valign="top" width="35%"><b>EcoCyc*</b> ver 17.0 <img alt="" src="http://pathways.cgrb.oregonstate.edu/img/EcoCyc.gif" align="right" height="40" width="125" /><br />\r
<i>Escherichia coli</i> <br />\r
Strain: K-12 MG1655<br /><a\r
href="http://palea.cgrb.oregonstate.edu:1555/ECOLI/class-tree?object=Pathways">Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/ECOLI/organism-summary?">Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/ecocyc.shtml">More info</a><br /><br />\r
</td>\r
</tr>\r
<tr class="searchbody">\r
-<td valign="top" width="32%"><b>SorghumCyc</b> ver 1.1 <img alt="" src="http://archive.gramene.org/pathway/sorghumcyc.png" align="right" border="0" height="18" width="84" /> <br />\r
+<td valign="top" width="32%"><b>SorghumCyc</b> ver 1.1 <img alt="" src="http://pathways.cgrb.oregonstate.edu/img/sorghumcyc.png" align="right" border="0" height="18" width="84" /> <br />\r
<i>Sorghum bicolor</i> <br />\r
Strain: BTx623<br /><a href="http://palea.cgrb.oregonstate.edu:1555/SORGHUM/class-tree?object=Pathways">Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/SORGHUM/organism-summary?">Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/sorghumcyc.shtml">More info</a><br /><br />\r
</td>\r
-<td valign="top" width="32%"><b>MedicCyc*</b> ver 1.0.1 <img alt="" src="http://archive.gramene.org/pathway/medicago.jpg" align="right" height="43" width="45" /><br />\r
+<td valign="top" width="32%"><b>MedicCyc*</b> ver 1.0.1 <img alt="" src="http://pathways.cgrb.oregonstate.edu/img/medicago.jpg" align="right" height="43" width="45" /><br />\r
<i>Medicago truncatula</i>, Barrelclover<br />\r
Unavailable<br /> <a href="http://palea.cgrb.oregonstate.edu:1555/MEDIC/class-tree?object=Pathways"-->Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/MEDIC/organism-summary?">Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/mediccyc.shtml">More info</a><br /><br />\r
</td>\r
-<td valign="top" width="35%"><b>MetaCyc*</b> ver 17.0 <img alt="" src="http://archive.gramene.org/pathway/MetaCyc.gif" align="right" height="30" width="125" /><br />\r
+<td valign="top" width="35%"><b>MetaCyc*</b> ver 17.0 <img alt="" src="http://pathways.cgrb.oregonstate.edu/img/MetaCyc.gif" align="right" height="30" width="125" /><br />\r
Reference Pathway Database<br />\r
Strain: not applicable<br /><a\r
href="http://palea.cgrb.oregonstate.edu:1555/META/class-tree?object=Pathways">Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/META/organism-summary?">Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/metacyc.shtml">More info</a><br /><br />\r
</td>\r
</tr>\r
<tr class="searchbody">\r
-<td valign="top" width="32%"><b>MaizeCyc</b> ver 2.1 <img alt="" src="http://archive.gramene.org/pathway/maizecyc.jpg" align="right" border="0" height="45" width="132" /> <br />\r
+<td valign="top" width="32%"><b>MaizeCyc</b> ver 2.1 <img alt="" src="http://pathways.cgrb.oregonstate.edu/img/maizecyc.jpg" align="right" border="0" height="45" width="132" /> <br />\r
<i>Zea mays</i> <br />\r
Strain: B73<br /><a href="http://palea.cgrb.oregonstate.edu:1555/MAIZE/class-tree?object=Pathways">Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/MAIZE/organism-summary?">Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/maizecyc.shtml">More info</a><br /><br />\r
</td>\r
-<td valign="top" width="35%"><b>PoplarCyc*</b> ver 5.0 <img alt="" src="http://archive.gramene.org/pathway/poplarcyc_logo.gif" align="right" height="30" width="125" /><br />\r
+<td valign="top" width="35%"><b>PoplarCyc*</b> ver 5.0 <img alt="" src="http://pathways.cgrb.oregonstate.edu/img/poplarcyc_logo.gif" align="right" height="30" width="125" /><br />\r
Populus trichocarpa (and other Populus species and hybrids)<br />\r
Strain: n/a<br /><a href="http://palea.cgrb.oregonstate.edu:1555/POPLAR/class-tree?object=Pathways">Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/POPLAR/organism-summary?">Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/poplarcyc.shtml">More info</a><br /><br />\r
</td>\r
\r
-<td valign="top" width="35%"><b>PlantCyc*</b> ver 7.0 <img alt="" src="http://archive.gramene.org/pathway/plantcyc_logo.gif" align="right" height="30" width="125" /><br />\r
+<td valign="top" width="35%"><b>PlantCyc*</b> ver 7.0 <img alt="" src="http://pathways.cgrb.oregonstate.edu/img/plantcyc_logo.gif" align="right" height="30" width="125" /><br />\r
Plant Metabolic Pathway Database<br />\r
Strain: not applicable<br /><a href="http://palea.cgrb.oregonstate.edu:1555/PLANT/class-tree?object=Pathways">Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/PLANT/organism-summary?">Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/plantcyc.shtml">More info</a><br /><br />\r
</td>\r
</tr>\r
<tr class="searchbody">\r
<td valign="top" width="32%"><b>BrachyCyc</b> ver 2.0 <img alt=""\r
-src="http://archive.gramene.org/pathway/brachycyc.jpg" align="right" border="0" height="45" width="132" /> <br /> <i>Brachypodium distachyon</i> <br />\r
+src="http://pathways.cgrb.oregonstate.edu/img/brachycyc.jpg" align="right" border="0" height="45" width="132" /> <br /> <i>Brachypodium distachyon</i> <br />\r
Strain: Bd21<br /><a href="http://palea.cgrb.oregonstate.edu:1555/BRACHY/class-tree?object=Pathways">Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/BRACHY/organism-summary?">Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/brachycyc.shtml">More info</a><br /><br />\r
</td>\r
\r
-<!--td valign="top" width="32%"><b>CapCyc*</b> ver 1.0.1.1 <img alt="" src="http://archive.gramene.org/pathway/pepper.gif" align="right" height="26" width="45" /><br /-->\r
+<!--td valign="top" width="32%"><b>CapCyc*</b> ver 1.0.1.1 <img alt="" src="http://pathways.cgrb.oregonstate.edu/img/pepper.gif" align="right" height="26" width="45" /><br /-->\r
<!--i>Capsicum anuum</i>, Pepper<br /-->\r
<!--Strain: n/a<br /> <a href="/CAP/class-tree?object=Pathways">Browse</a> | <a href="/CAP/organism-summary?">Summary</a> | <a href="/gramene/capcyc.shtml">More info</a><br /><br /-->\r
<!--/td-->\r
<!--tr class="searchbody"-->\r
<!--td valign="top" width="32%"><br /-->\r
<!--/td-->\r
-<td valign="top" width="32%"><b>PotatoCyc*</b> ver 1.0.1 <img alt="" src="http://archive.gramene.org/pathway/potato.jpg" align="right" height="45" width="45" /><br />\r
+<td valign="top" width="32%"><b>PotatoCyc*</b> ver 1.0.1 <img alt="" src="http://pathways.cgrb.oregonstate.edu/img/potato.jpg" align="right" height="45" width="45" /><br />\r
<i>Solanum tuberosum</i>, Potato<br />\r
Strain: n/a <br /> <a href="http://palea.cgrb.oregonstate.edu:1555/POTATO/class-tree?object=Pathways"-->Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/POTATO/organism-summary?">Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/potatocyc.shtml">More info</a><br /><br />\r
</td>\r
</td>\r
</tr>\r
<tr class="searchbody">\r
-<td valign="top" width="32%"><br />\r
+<td valign="top" width="32%"><b>VitisCyc*</b> ver 1.1 <img alt="" src="http://pathways.cgrb.oregonstate.edu/img/grape.jpg" align="right" height="46" width="45" /><br />\r
+<i>Vitis vinifera</i>, Grape<br />\r
+Strain: n/a<br /><a href="http://palea.cgrb.oregonstate.edu:1555/VITIS/class-tree?object=Pathways">Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/VITIS/organism-summary?"-->Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/vitiscyc.shtml">More info</a><br /><br />\r
</td>\r
-<td valign="top" width="32%"><b>CoffeaCyc*</b> ver 1.1.1 <img alt="" src="http://archive.gramene.org/pathway/coffee.jpg" align="right" height="46" width="45" /><br />\r
+<td valign="top" width="32%"><b>CoffeaCyc*</b> ver 1.1.1 <img alt="" src="http://pathways.cgrb.oregonstate.edu/img/coffee.jpg" align="right" height="46" width="45" /><br />\r
<i>Coffea canephora</i>, Coffee<br />\r
Strain: n/a<br /><a href="http://palea.cgrb.oregonstate.edu:1555/COFFEA/class-tree?object=Pathways">Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/COFFEA/organism-summary?"-->Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/coffeacyc.shtml">More info</a><br /><br />\r
</td>\r
<td valign="top" width="35%"><br />\r
</td>\r
</tr>\r
-\r
<tr class="searchbody">\r
-<td valign="top" width="32%"><br />\r
+<td valign="top" width="32%"><b>EucalyptusCyc*</b> ver 1.7 <img alt="" src="http://pathways.cgrb.oregonstate.edu/img/eucalyptus.jpg" align="right" height="45" width="45" /><br />\r
+<i>Eucalyptus grandis</i>, Eucaplyptus<br />\r
+Strain: n/a<br /><a href="http://palea.cgrb.oregonstate.edu:1555/EUCALYPTUS/class-tree?object=Pathways">Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/EUCALYPTUS/organism-summary?">Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/eucalyptuscyc.shtml">More info</a><br /><br />\r
</td>\r
-<td valign="top" width="32%"><b>LycoCyc*</b> ver 2.0.1 <img alt="" src="http://archive.gramene.org/pathway/tomato.jpg" align="right" height="45" width="45" /><br />\r
+<td valign="top" width="32%"><b>LycoCyc*</b> ver 2.0.1 <img alt="" src="http://pathways.cgrb.oregonstate.edu/img/tomato.jpg" align="right" height="45" width="45" /><br />\r
<i>Solanum lycopersicum</i>, Tomato<br />\r
Strain: n/a<br /><a href="http://palea.cgrb.oregonstate.edu:1555/LYCO/class-tree?object=Pathways">Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/LYCO/organism-summary?">Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/lycocyc.shtml">More info</a><br /><br />\r
</td>\r
</tr>\r
\r
<tr class="searchbody">\r
-<td colspan="3" rowspan="1" valign="top">\r
+<td valign="top" width="32%"><b>FragariaCyc*</b> ver 2.0 <img alt="" src="http://pathways.cgrb.oregonstate.edu/img/strawberry.gif" align="right" height="45" width="45" /><br />\r
+<i>Fragaria vesca</i>, Strawberry<br />\r
+Strain: n/a<br /><a href="http://palea.cgrb.oregonstate.edu:1555/FRAGARIA/class-tree?object=Pathways">Browse</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/FRAGARIA/organism-summary?">Summary</a> | <a href="http://palea.cgrb.oregonstate.edu:1555/jaiswallab/fragariacyc.shtml">More info</a><br /><br />\r
+</td>\r
+<td valign="top" width="32%">\r
+</td>\r
+<td valign="top" width="35%"><br />\r
</td>\r
</tr>\r
-\r
-</table>\r
-* Mirror database. Not curated by the Gramene database. Click on <b>more info</b> link for details.\r
+<tr class="searchbody">\r
+<td colspan="3" rowspan="1" valign="middle">\r
+* Mirror database.\r
+<br>\r
+** Curated and developed by the Gramene database.\r
<br>\r
+** Developed by the Naithani Lab.\r
+<br>\r
+</td>\r
+</tr>\r
+</table>\r
+<p>\r
\r
\r
<h2>Other Tools</h2>\r
</tr>\r
</table>\r
\r
+<!--\r
<a name = "download"></a><h2>Download</h2>\r
<ul>\r
<li><a href="ftp://ftp.gramene.org/pub/gramene/pathways/">Downloads</a> from our ftp archive.\r
<li>For other species, please follow the links from the <a href="#acknowledgements">Acknowledgements</a></li>\r
</ul>\r
+-->\r
\r
<h2>Useful external links</h2>\r
<table width="80%" cellpadding="6" cellspacing="4" align="center">\r
<a name="acknowledgements"></a><h2>Acknowledgements</h2>\r
<ul>\r
<p>\r
-
RiceCyc, SorghumCyc, MaizeCyc and BrachyCyc pathway databases were created using the <a href="http://bioinformatics.ai.sri.com/ptools/">Pathway Tools</a> software developed by Peter D. Karp</a> and coworkers in the <a href="http://bioinformatics.ai.sri.com/">Bioinformatics Research Group</a> at SRI International.
\r+
Pathway databases were created using the <a href="http://bioinformatics.ai.sri.com/ptools/">Pathway Tools</a> software developed by Peter D. Karp</a> and coworkers in the <a href="http://bioinformatics.ai.sri.com/">Bioinformatics Research Group</a> at SRI International.
\r </p>\r
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<p>\r
projects / old-jaiswallab-svn / .git / commitdiff