mods for projected species flexibility

svn path=/; revision=535

diff --git a/Personnel/preecej/python_singletons/map_os_2_at.py b/Personnel/preecej/python_singletons/map_os_2_at.py
index b784e8ed17de4febd8acca144b55612dff1bf4fb..1f101cf24beda03239849b245d850ba10d595f85 100755 (executable)
--- a/Personnel/preecej/python_singletons/map_os_2_at.py
+++ b/Personnel/preecej/python_singletons/map_os_2_at.py
@@ -103,7 +103,7 @@ def inp_map(input_file, output_file) :
     for line in INP :
         cols = line.rstrip().split()
         os_locus = cols[1].rstrip(".1")
-        prj_locus = cols[2].rstrip(".1")
+        prj_locus = cols[2].rsplit("_",1)[0].rsplit(".",1)[0] # remove any isoform suffixes
         if os_locus in dict_inp_ids.keys() :
             dict_inp_ids[os_locus].append(prj_locus)
         else :