T.cacao genes <=> symbols

svn path=/; revision=610

diff --git a/interactome_scripts/find_species.pl b/interactome_scripts/find_species.pl
index d7a776141cdff6e67d9f16cae25d81da54f939e6..c608f1a9a0fbe60ea61b5e77b5fde4b761a757cb 100755 (executable)
--- a/interactome_scripts/find_species.pl
+++ b/interactome_scripts/find_species.pl
@@ -577,7 +577,7 @@ sub find_gene {
         $gene = $transcript;
        }elsif ($species eq "Theobroma_cacao") {
                my ($gene_id,$transcript) = split(/\|/,$gene_header);
-               $gene = $gene_id;
+               $gene = $transcript;
        }elsif ($species eq "Tolypocladium_inflatum") {
                $gene = $gene_header;
        }elsif ($species eq "Trichodesmium_erythraeum") {
@@ -856,7 +856,7 @@ sub find_gene_synonym {
         $synonym = "$peptide,$gene_id";
        }elsif ($species eq "Theobroma_cacao") {
                my ($gene_id,$transcript) = split(/\|/,$gene_header);
-               $synonym = $transcript;
+               $synonym = $gene_id;
        }elsif ($species eq "Trichodesmium_erythraeum") {
                my ($peptide,$temp,$chrom,$gene_id,$transcript,$gene_type,$transcript_type) = split(/\s/,$gene_header);
         $transcript =~ s/transcript\://;