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Fix species lookup
author
elserj
<elserj@localhost>
Wed, 19 Feb 2020 21:05:18 +0000
(21:05 +0000)
committer
elserj
<elserj@localhost>
Wed, 19 Feb 2020 21:05:18 +0000
(21:05 +0000)
svn path=/; revision=670
interactome_scripts/association_file_from_orthologs_simple.pl
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diff --git
a/interactome_scripts/association_file_from_orthologs_simple.pl
b/interactome_scripts/association_file_from_orthologs_simple.pl
index 280cbbdfbbd00d7eddd58bad083c0ea0e6ac647a..8a3b3897d5a416c13bc40cef5ea80410afd8148e 100755
(executable)
--- a/
interactome_scripts/association_file_from_orthologs_simple.pl
+++ b/
interactome_scripts/association_file_from_orthologs_simple.pl
@@
-10,7
+10,6
@@
$year += 1900;
$month = sprintf '%02d', $month+1;
$day = sprintf '%02d', $day;
my $curr_date = "$year$month$day";
-print "$curr_date\n";
@@
-33,7
+32,7
@@
my $inorthofile = $ARGV[1];
my $outfile = $ARGV[2];
# Get species and taxon
-my $species = find_species("$in
gaf
file");
+my $species = find_species("$in
ortho
file");
my $new_taxon = find_taxon($species);