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first trial version with annotations for "seed" term and its children
authorpankaj <pankaj@localhost>
Fri, 15 Oct 2004 19:40:09 +0000 (19:40 +0000)
committerpankaj <pankaj@localhost>
Fri, 15 Oct 2004 19:40:09 +0000 (19:40 +0000)
svn path=/; revision=1

po-associations/phenotype_association.gramene_oryza [new file with mode: 0644] patch | blob
po-associations/po_anatomy_gene_oryza_gramene.assoc [new file with mode: 0644] patch | blob
po-associations/po_gene_association.gramene_oryza [new file with mode: 0644] patch | blob

diff --git a/po-associations/phenotype_association.gramene_oryza b/po-associations/phenotype_association.gramene_oryza
new file mode 100644 (file)
index 0000000..b084eb3
--- /dev/null
+++ b/po-associations/phenotype_association.gramene_oryza
@@ -0,0 +1,46 @@
+GR     GR:0060019      agr1            PO:0009005      GR_ref:1477     IMP             A       agravitropism-1         gene    taxon:4527      20040602        GR
+GR     GR:0060154      [cms-Kalinga-I]         PO:0009005      GR_ref:5870     IMP             A       Cytoplasmic controlled cold tolerance           gene    taxon:4527      20040602        GR
+GR     GR:0060175      crl1            PO:0003008      GR_ref:6082     IMP             A       crown rootless-1                gene    taxon:4527      20040602        GR
+GR     GR:0060176      crl2            PO:0003008      GR_ref:6082     IMP             A       crown rootless-2                gene    taxon:4527      20040602        GR
+GR     GR:0061068      rrl1            PO:0009005      GR_ref:6870     IMP             A       reduced root length-1           gene    taxon:4527      20040602        GR
+GR     GR:0061069      rrl2            PO:0009005      GR_ref:6870     IMP             A       reduced root length-2           gene    taxon:4527      20040602        GR
+GR     GR:0060019      agr1            PO:0009009      GR_ref:1477     IMP             A       agravitropism-1         gene    taxon:4527      20040602        GR
+GR     GR:0060054      An7             PO:0009009      GR_ref:5859     IMP             A       Awn-7           gene    taxon:4527      20040602        GR
+GR     GR:0060057      apd1            PO:0020110      GR_ref:1477     IMP             A       apical displacement-1           gene    taxon:4527      20040602        GR
+GR     GR:0060057      apd1            PO:0020110      GR_ref:6103     IMP             A       apical displacement-1           gene    taxon:4527      20040602        GR
+GR     GR:0060057      apd1            PO:0020033      GR_ref:6103     IMP             A       apical displacement-1           gene    taxon:4527      20040602        GR
+GR     GR:0060057      apd1            PO:0020032      GR_ref:6103     IMP             A       apical displacement-1           gene    taxon:4527      20040602        GR
+GR     GR:0060057      apd1            PO:0020031      GR_ref:6103     IMP             A       apical displacement-1           gene    taxon:4527      20040602        GR
+GR     GR:0060142      cle1            PO:0009009      GR_ref:6103     IMP             A       club-shaped embryo-1            gene    taxon:4527      20040602        GR
+GR     GR:0060182      Dhl1            PO:0009009      GR_ref:5587     IMP             A       Dominant hybrid lethal-1        "D1, Da, Dominant lethal from O. longistaminata"        gene    taxon:4527      20040602        GR
+GR     GR:0060182      Dhl1            PO:0009009      GR_ref:5546     IMP             A       Dominant hybrid lethal-1        "D1, Da, Dominant lethal from O. longistaminata"        gene    taxon:4527      20040602        GR
+GR     GR:0060183      Dhl2            PO:0009009      GR_ref:5587     IMP             A       Dominant hybrid lethal-2        "D2, Db, Dominant lethal from O. sativa"        gene    taxon:4527      20040602        GR
+GR     GR:0060183      Dhl2            PO:0009009      GR_ref:5546     IMP             A       Dominant hybrid lethal-2        "D2, Db, Dominant lethal from O. sativa"        gene    taxon:4527      20040602        GR
+GR     GR:0060238      dp1             PO:0009009      GR_ref:3019     IMP             A       depressed palea-1       pa      gene    taxon:4527      20040602        GR
+GR     GR:0060292      eml1            PO:0009009      GR_ref:5606     IMP             A       embryoless-1            gene    taxon:4527      20040602        GR
+GR     GR:0060362      ge              PO:0020110      GR_ref:3899     IMP             A       giant embryo    ge1     gene    taxon:4527      20040602        GR
+GR     GR:0060372      gle1            PO:0009009      GR_ref:6368     IMP             A       globular embryo-1               gene    taxon:4527      20040602        GR
+GR     GR:0060373      gle2            PO:0009009      GR_ref:6368     IMP             A       globular embryo-2               gene    taxon:4527      20040602        GR
+GR     GR:0060374      gle3            PO:0009009      GR_ref:6368     IMP             A       globular embryo-3               gene    taxon:4527      20040602        GR
+GR     GR:0060586      orl1            PO:0020032      GR_ref:1477     IMP             A       organless embryo-1              gene    taxon:4527      20040602        GR
+GR     GR:0060586      orl1            PO:0020031      GR_ref:1477     IMP             A       organless embryo-1              gene    taxon:4527      20040602        GR
+GR     GR:0060722      ral1            PO:0020031      GR_ref:1477     IMP             A       radicleless-1           gene    taxon:4527      20040602        GR
+GR     GR:0060722      ral1            PO:0020129      GR_ref:1477     IMP             A       radicleless-1           gene    taxon:4527      20040602        GR
+GR     GR:0060734      re1             PO:0009009      GR_ref:6103     IMP             A       reduced embryo-1                gene    taxon:4527      20040602        GR
+GR     GR:0060735      re2             PO:0009009      GR_ref:6103     IMP             A       reduced embryo-2                gene    taxon:4527      20040602        GR
+GR     GR:0060736      re3             PO:0009009      GR_ref:6103     IMP             A       reduced embryo-3                gene    taxon:4527      20040602        GR
+GR     GR:0060879      shl1            PO:0020036      GR_ref:6079     IMP             A       shootless-1     sh1     gene    taxon:4527      20040602        GR
+GR     GR:0060879      shl1            PO:0020033      GR_ref:6079     IMP             A       shootless-1     sh1     gene    taxon:4527      20040602        GR
+GR     GR:0060880      shl2            PO:0009009      GR_ref:6079     IMP             A       shootless-2     sh2     gene    taxon:4527      20040602        GR
+GR     GR:0060881      shl3            PO:0020036      GR_ref:6079     IMP             A       shootless-3     sh3     gene    taxon:4527      20040602        GR
+GR     GR:0060881      shl3            PO:0020033      GR_ref:6079     IMP             A       shootless-3     sh3     gene    taxon:4527      20040602        GR
+GR     GR:0060882      shl4            PO:0009009      GR_ref:6079     IMP             A       shootless-4     sh4     gene    taxon:4527      20040602        GR
+GR     GR:0060883      sho1            PO:0009009      GR_ref:6102     IMP             A       shoot organization-1            gene    taxon:4527      20040602        GR
+GR     GR:0060884      sho2            PO:0009009      GR_ref:6102     IMP             A       shoot organization-2            gene    taxon:4527      20040602        GR
+GR     GR:0060890      spt1            PO:0009009      GR_ref:6103     IMP             A       shoot position-1        shp1    gene    taxon:4527      20040602        GR
+GR     GR:0060992      vep1            PO:0009009      GR_ref:1477     IMP             A       variable embryo phenotypes-1    odm9    gene    taxon:4527      20040602        GR
+GR     GR:0060993      vep2            PO:0009009      GR_ref:1477     IMP             A       variable embryo phenotypes-2    odm11   gene    taxon:4527      20040602        GR
+GR     GR:0060993      vep2            PO:0020031      GR_ref:1477     IMP             A       variable embryo phenotypes-2    odm11   gene    taxon:4527      20040602        GR
+GR     GR:0060994      vep3            PO:0009009      GR_ref:1477     IMP             A       variable embryo phenotypes-3    qdm18   gene    taxon:4527      20040602        GR
+GR     GR:0060994      vep3            PO:0020031      GR_ref:1477     IMP             A       variable embryo phenotypes-3    qdm18   gene    taxon:4527      20040602        GR
+GR     GR:0061065      sho3            PO:0009009      GR_ref:6102     IMP             A       shoot organization-3            gene    taxon:4527      20040602        GR
diff --git a/po-associations/po_anatomy_gene_oryza_gramene.assoc b/po-associations/po_anatomy_gene_oryza_gramene.assoc
new file mode 100644 (file)
index 0000000..b084eb3
--- /dev/null
+++ b/po-associations/po_anatomy_gene_oryza_gramene.assoc
@@ -0,0 +1,46 @@
+GR     GR:0060019      agr1            PO:0009005      GR_ref:1477     IMP             A       agravitropism-1         gene    taxon:4527      20040602        GR
+GR     GR:0060154      [cms-Kalinga-I]         PO:0009005      GR_ref:5870     IMP             A       Cytoplasmic controlled cold tolerance           gene    taxon:4527      20040602        GR
+GR     GR:0060175      crl1            PO:0003008      GR_ref:6082     IMP             A       crown rootless-1                gene    taxon:4527      20040602        GR
+GR     GR:0060176      crl2            PO:0003008      GR_ref:6082     IMP             A       crown rootless-2                gene    taxon:4527      20040602        GR
+GR     GR:0061068      rrl1            PO:0009005      GR_ref:6870     IMP             A       reduced root length-1           gene    taxon:4527      20040602        GR
+GR     GR:0061069      rrl2            PO:0009005      GR_ref:6870     IMP             A       reduced root length-2           gene    taxon:4527      20040602        GR
+GR     GR:0060019      agr1            PO:0009009      GR_ref:1477     IMP             A       agravitropism-1         gene    taxon:4527      20040602        GR
+GR     GR:0060054      An7             PO:0009009      GR_ref:5859     IMP             A       Awn-7           gene    taxon:4527      20040602        GR
+GR     GR:0060057      apd1            PO:0020110      GR_ref:1477     IMP             A       apical displacement-1           gene    taxon:4527      20040602        GR
+GR     GR:0060057      apd1            PO:0020110      GR_ref:6103     IMP             A       apical displacement-1           gene    taxon:4527      20040602        GR
+GR     GR:0060057      apd1            PO:0020033      GR_ref:6103     IMP             A       apical displacement-1           gene    taxon:4527      20040602        GR
+GR     GR:0060057      apd1            PO:0020032      GR_ref:6103     IMP             A       apical displacement-1           gene    taxon:4527      20040602        GR
+GR     GR:0060057      apd1            PO:0020031      GR_ref:6103     IMP             A       apical displacement-1           gene    taxon:4527      20040602        GR
+GR     GR:0060142      cle1            PO:0009009      GR_ref:6103     IMP             A       club-shaped embryo-1            gene    taxon:4527      20040602        GR
+GR     GR:0060182      Dhl1            PO:0009009      GR_ref:5587     IMP             A       Dominant hybrid lethal-1        "D1, Da, Dominant lethal from O. longistaminata"        gene    taxon:4527      20040602        GR
+GR     GR:0060182      Dhl1            PO:0009009      GR_ref:5546     IMP             A       Dominant hybrid lethal-1        "D1, Da, Dominant lethal from O. longistaminata"        gene    taxon:4527      20040602        GR
+GR     GR:0060183      Dhl2            PO:0009009      GR_ref:5587     IMP             A       Dominant hybrid lethal-2        "D2, Db, Dominant lethal from O. sativa"        gene    taxon:4527      20040602        GR
+GR     GR:0060183      Dhl2            PO:0009009      GR_ref:5546     IMP             A       Dominant hybrid lethal-2        "D2, Db, Dominant lethal from O. sativa"        gene    taxon:4527      20040602        GR
+GR     GR:0060238      dp1             PO:0009009      GR_ref:3019     IMP             A       depressed palea-1       pa      gene    taxon:4527      20040602        GR
+GR     GR:0060292      eml1            PO:0009009      GR_ref:5606     IMP             A       embryoless-1            gene    taxon:4527      20040602        GR
+GR     GR:0060362      ge              PO:0020110      GR_ref:3899     IMP             A       giant embryo    ge1     gene    taxon:4527      20040602        GR
+GR     GR:0060372      gle1            PO:0009009      GR_ref:6368     IMP             A       globular embryo-1               gene    taxon:4527      20040602        GR
+GR     GR:0060373      gle2            PO:0009009      GR_ref:6368     IMP             A       globular embryo-2               gene    taxon:4527      20040602        GR
+GR     GR:0060374      gle3            PO:0009009      GR_ref:6368     IMP             A       globular embryo-3               gene    taxon:4527      20040602        GR
+GR     GR:0060586      orl1            PO:0020032      GR_ref:1477     IMP             A       organless embryo-1              gene    taxon:4527      20040602        GR
+GR     GR:0060586      orl1            PO:0020031      GR_ref:1477     IMP             A       organless embryo-1              gene    taxon:4527      20040602        GR
+GR     GR:0060722      ral1            PO:0020031      GR_ref:1477     IMP             A       radicleless-1           gene    taxon:4527      20040602        GR
+GR     GR:0060722      ral1            PO:0020129      GR_ref:1477     IMP             A       radicleless-1           gene    taxon:4527      20040602        GR
+GR     GR:0060734      re1             PO:0009009      GR_ref:6103     IMP             A       reduced embryo-1                gene    taxon:4527      20040602        GR
+GR     GR:0060735      re2             PO:0009009      GR_ref:6103     IMP             A       reduced embryo-2                gene    taxon:4527      20040602        GR
+GR     GR:0060736      re3             PO:0009009      GR_ref:6103     IMP             A       reduced embryo-3                gene    taxon:4527      20040602        GR
+GR     GR:0060879      shl1            PO:0020036      GR_ref:6079     IMP             A       shootless-1     sh1     gene    taxon:4527      20040602        GR
+GR     GR:0060879      shl1            PO:0020033      GR_ref:6079     IMP             A       shootless-1     sh1     gene    taxon:4527      20040602        GR
+GR     GR:0060880      shl2            PO:0009009      GR_ref:6079     IMP             A       shootless-2     sh2     gene    taxon:4527      20040602        GR
+GR     GR:0060881      shl3            PO:0020036      GR_ref:6079     IMP             A       shootless-3     sh3     gene    taxon:4527      20040602        GR
+GR     GR:0060881      shl3            PO:0020033      GR_ref:6079     IMP             A       shootless-3     sh3     gene    taxon:4527      20040602        GR
+GR     GR:0060882      shl4            PO:0009009      GR_ref:6079     IMP             A       shootless-4     sh4     gene    taxon:4527      20040602        GR
+GR     GR:0060883      sho1            PO:0009009      GR_ref:6102     IMP             A       shoot organization-1            gene    taxon:4527      20040602        GR
+GR     GR:0060884      sho2            PO:0009009      GR_ref:6102     IMP             A       shoot organization-2            gene    taxon:4527      20040602        GR
+GR     GR:0060890      spt1            PO:0009009      GR_ref:6103     IMP             A       shoot position-1        shp1    gene    taxon:4527      20040602        GR
+GR     GR:0060992      vep1            PO:0009009      GR_ref:1477     IMP             A       variable embryo phenotypes-1    odm9    gene    taxon:4527      20040602        GR
+GR     GR:0060993      vep2            PO:0009009      GR_ref:1477     IMP             A       variable embryo phenotypes-2    odm11   gene    taxon:4527      20040602        GR
+GR     GR:0060993      vep2            PO:0020031      GR_ref:1477     IMP             A       variable embryo phenotypes-2    odm11   gene    taxon:4527      20040602        GR
+GR     GR:0060994      vep3            PO:0009009      GR_ref:1477     IMP             A       variable embryo phenotypes-3    qdm18   gene    taxon:4527      20040602        GR
+GR     GR:0060994      vep3            PO:0020031      GR_ref:1477     IMP             A       variable embryo phenotypes-3    qdm18   gene    taxon:4527      20040602        GR
+GR     GR:0061065      sho3            PO:0009009      GR_ref:6102     IMP             A       shoot organization-3            gene    taxon:4527      20040602        GR
diff --git a/po-associations/po_gene_association.gramene_oryza b/po-associations/po_gene_association.gramene_oryza
new file mode 100644 (file)
index 0000000..b084eb3
--- /dev/null
+++ b/po-associations/po_gene_association.gramene_oryza
@@ -0,0 +1,46 @@
+GR     GR:0060019      agr1            PO:0009005      GR_ref:1477     IMP             A       agravitropism-1         gene    taxon:4527      20040602        GR
+GR     GR:0060154      [cms-Kalinga-I]         PO:0009005      GR_ref:5870     IMP             A       Cytoplasmic controlled cold tolerance           gene    taxon:4527      20040602        GR
+GR     GR:0060175      crl1            PO:0003008      GR_ref:6082     IMP             A       crown rootless-1                gene    taxon:4527      20040602        GR
+GR     GR:0060176      crl2            PO:0003008      GR_ref:6082     IMP             A       crown rootless-2                gene    taxon:4527      20040602        GR
+GR     GR:0061068      rrl1            PO:0009005      GR_ref:6870     IMP             A       reduced root length-1           gene    taxon:4527      20040602        GR
+GR     GR:0061069      rrl2            PO:0009005      GR_ref:6870     IMP             A       reduced root length-2           gene    taxon:4527      20040602        GR
+GR     GR:0060019      agr1            PO:0009009      GR_ref:1477     IMP             A       agravitropism-1         gene    taxon:4527      20040602        GR
+GR     GR:0060054      An7             PO:0009009      GR_ref:5859     IMP             A       Awn-7           gene    taxon:4527      20040602        GR
+GR     GR:0060057      apd1            PO:0020110      GR_ref:1477     IMP             A       apical displacement-1           gene    taxon:4527      20040602        GR
+GR     GR:0060057      apd1            PO:0020110      GR_ref:6103     IMP             A       apical displacement-1           gene    taxon:4527      20040602        GR
+GR     GR:0060057      apd1            PO:0020033      GR_ref:6103     IMP             A       apical displacement-1           gene    taxon:4527      20040602        GR
+GR     GR:0060057      apd1            PO:0020032      GR_ref:6103     IMP             A       apical displacement-1           gene    taxon:4527      20040602        GR
+GR     GR:0060057      apd1            PO:0020031      GR_ref:6103     IMP             A       apical displacement-1           gene    taxon:4527      20040602        GR
+GR     GR:0060142      cle1            PO:0009009      GR_ref:6103     IMP             A       club-shaped embryo-1            gene    taxon:4527      20040602        GR
+GR     GR:0060182      Dhl1            PO:0009009      GR_ref:5587     IMP             A       Dominant hybrid lethal-1        "D1, Da, Dominant lethal from O. longistaminata"        gene    taxon:4527      20040602        GR
+GR     GR:0060182      Dhl1            PO:0009009      GR_ref:5546     IMP             A       Dominant hybrid lethal-1        "D1, Da, Dominant lethal from O. longistaminata"        gene    taxon:4527      20040602        GR
+GR     GR:0060183      Dhl2            PO:0009009      GR_ref:5587     IMP             A       Dominant hybrid lethal-2        "D2, Db, Dominant lethal from O. sativa"        gene    taxon:4527      20040602        GR
+GR     GR:0060183      Dhl2            PO:0009009      GR_ref:5546     IMP             A       Dominant hybrid lethal-2        "D2, Db, Dominant lethal from O. sativa"        gene    taxon:4527      20040602        GR
+GR     GR:0060238      dp1             PO:0009009      GR_ref:3019     IMP             A       depressed palea-1       pa      gene    taxon:4527      20040602        GR
+GR     GR:0060292      eml1            PO:0009009      GR_ref:5606     IMP             A       embryoless-1            gene    taxon:4527      20040602        GR
+GR     GR:0060362      ge              PO:0020110      GR_ref:3899     IMP             A       giant embryo    ge1     gene    taxon:4527      20040602        GR
+GR     GR:0060372      gle1            PO:0009009      GR_ref:6368     IMP             A       globular embryo-1               gene    taxon:4527      20040602        GR
+GR     GR:0060373      gle2            PO:0009009      GR_ref:6368     IMP             A       globular embryo-2               gene    taxon:4527      20040602        GR
+GR     GR:0060374      gle3            PO:0009009      GR_ref:6368     IMP             A       globular embryo-3               gene    taxon:4527      20040602        GR
+GR     GR:0060586      orl1            PO:0020032      GR_ref:1477     IMP             A       organless embryo-1              gene    taxon:4527      20040602        GR
+GR     GR:0060586      orl1            PO:0020031      GR_ref:1477     IMP             A       organless embryo-1              gene    taxon:4527      20040602        GR
+GR     GR:0060722      ral1            PO:0020031      GR_ref:1477     IMP             A       radicleless-1           gene    taxon:4527      20040602        GR
+GR     GR:0060722      ral1            PO:0020129      GR_ref:1477     IMP             A       radicleless-1           gene    taxon:4527      20040602        GR
+GR     GR:0060734      re1             PO:0009009      GR_ref:6103     IMP             A       reduced embryo-1                gene    taxon:4527      20040602        GR
+GR     GR:0060735      re2             PO:0009009      GR_ref:6103     IMP             A       reduced embryo-2                gene    taxon:4527      20040602        GR
+GR     GR:0060736      re3             PO:0009009      GR_ref:6103     IMP             A       reduced embryo-3                gene    taxon:4527      20040602        GR
+GR     GR:0060879      shl1            PO:0020036      GR_ref:6079     IMP             A       shootless-1     sh1     gene    taxon:4527      20040602        GR
+GR     GR:0060879      shl1            PO:0020033      GR_ref:6079     IMP             A       shootless-1     sh1     gene    taxon:4527      20040602        GR
+GR     GR:0060880      shl2            PO:0009009      GR_ref:6079     IMP             A       shootless-2     sh2     gene    taxon:4527      20040602        GR
+GR     GR:0060881      shl3            PO:0020036      GR_ref:6079     IMP             A       shootless-3     sh3     gene    taxon:4527      20040602        GR
+GR     GR:0060881      shl3            PO:0020033      GR_ref:6079     IMP             A       shootless-3     sh3     gene    taxon:4527      20040602        GR
+GR     GR:0060882      shl4            PO:0009009      GR_ref:6079     IMP             A       shootless-4     sh4     gene    taxon:4527      20040602        GR
+GR     GR:0060883      sho1            PO:0009009      GR_ref:6102     IMP             A       shoot organization-1            gene    taxon:4527      20040602        GR
+GR     GR:0060884      sho2            PO:0009009      GR_ref:6102     IMP             A       shoot organization-2            gene    taxon:4527      20040602        GR
+GR     GR:0060890      spt1            PO:0009009      GR_ref:6103     IMP             A       shoot position-1        shp1    gene    taxon:4527      20040602        GR
+GR     GR:0060992      vep1            PO:0009009      GR_ref:1477     IMP             A       variable embryo phenotypes-1    odm9    gene    taxon:4527      20040602        GR
+GR     GR:0060993      vep2            PO:0009009      GR_ref:1477     IMP             A       variable embryo phenotypes-2    odm11   gene    taxon:4527      20040602        GR
+GR     GR:0060993      vep2            PO:0020031      GR_ref:1477     IMP             A       variable embryo phenotypes-2    odm11   gene    taxon:4527      20040602        GR
+GR     GR:0060994      vep3            PO:0009009      GR_ref:1477     IMP             A       variable embryo phenotypes-3    qdm18   gene    taxon:4527      20040602        GR
+GR     GR:0060994      vep3            PO:0020031      GR_ref:1477     IMP             A       variable embryo phenotypes-3    qdm18   gene    taxon:4527      20040602        GR
+GR     GR:0061065      sho3            PO:0009009      GR_ref:6102     IMP             A       shoot organization-3            gene    taxon:4527      20040602        GR
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