In the curated folder, three pathways related to GA Biosynthesis. Here the simple...

svn path=/; revision=418

diff --git a/plant_reactome/rice_reactome_curation/sushma/Curated GA biosynthesis/gibberellin biosynthesis I (non C-13 hydroxylation)curated.rtpj b/plant_reactome/rice_reactome_curation/sushma/Curated GA biosynthesis/gibberellin biosynthesis I (non C-13 hydroxylation)curated.rtpj
new file mode 100644 (file)
index 0000000..2ffcd4b
--- /dev/null
+++ b/plant_reactome/rice_reactome_curation/sushma/Curated GA biosynthesis/gibberellin biosynthesis I (non C-13 hydroxylation)curated.rtpj
@@ -0,0 +1,2409 @@
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+        <attribute name="geneName" value="P0512G09.18" />
+        <attribute name="geneName" value="P0695A04.27" />
+        <attribute name="name" value="oxidoreductase, putative, expressed//oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors//isopenicillin-N synthase//gibberellin 20-oxidase" />
+        <attribute name="name" value="protein82292" />
+        <attribute name="comment" value="There is no direct association of LOC_Os01G09300.1 with this uniprot id &quot;Q5SND7&quot;. Palitha Dharmawardha associated these with each other based on blast search. (added by Sushma Naithani, OCT-05-2012)" />
+        <attribute name="identifier" value="Q5SND7" />
+      </instance>
+      <instance DB_ID="1157441" displayName="UniProt:Q8LGZ9 LOC_OS07G01340" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="1157441" />
+        <attribute name="species" class="Species" referTo="-1" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="2" />
+        <attribute name="keyword" value="Complete proteome" />
+        <attribute name="keyword" value="Iron" />
+        <attribute name="keyword" value="Oxidoreductase" />
+        <attribute name="_displayName" value="UniProt:Q8LGZ9 LOC_OS07G01340" />
+        <attribute name="secondaryIdentifier" value="Q8LGZ9_ORYSJ" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="description" value="gibberellin 20-oxidase, catalyzes conversion of GA12 to GA15. 341 a.a. long protein. (added by Sushma Naithani)" />
+        <attribute name="geneName" value="LOC_OS07G01340" />
+        <attribute name="geneName" value="P0446F04.116" />
+        <attribute name="geneName" value="Os07g0103500" />
+        <attribute name="name" value="gibberellin 2-beta-dioxygenase 7, putative, expressed" />
+        <attribute name="name" value="protein86630" />
+        <attribute name="comment" value="gibberellin 20-oxidase, catalyzes conversion of GA12 to GA15. (Sushma Naithani, OCT-05-2012)" />
+        <attribute name="identifier" value="Q8LGZ9" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1147134" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1139522" />
+      </instance>
+    </ReferenceGeneProduct>
+    <InstanceEdit>
+      <instance DB_ID="1301009" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="396309" displayName="Kanapin, EE, 2009-03-09 13:26:57" isShell="true" />
+      <instance DB_ID="937668" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1164949" displayName="Wu, G, 2010-12-10" isShell="false" isDirty="false">
+        <attribute name="author" class="Person" referTo="1112777" />
+        <attribute name="DB_ID" value="1164949" />
+        <attribute name="dateTime" value="2010-12-10 23:21:41.0" />
+        <attribute name="_displayName" value="Wu, G, 2010-12-10" />
+      </instance>
+      <instance DB_ID="436347" displayName="Kanapin, EE" isShell="true" />
+      <instance DB_ID="2266118" displayName="Weiser, JD" isShell="true" />
+      <instance DB_ID="1169175" displayName="D'Eustachio, P, 2011-01-12" isShell="true" />
+      <instance DB_ID="186845" displayName="D'Eustachio, P, 2006-08-28 17:20:12" isShell="true" />
+      <instance DB_ID="2266147" displayName="Weiser, JD" isShell="true" />
+      <instance DB_ID="160533" displayName="Schmidt, EE, 2005-03-23 05:24:35" isShell="true" />
+      <instance DB_ID="1996004" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1552540" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1173252" displayName="D'Eustachio, P, 2011-01-21" isShell="true" />
+      <instance DB_ID="526073" displayName="Kanapin, AA" isShell="true" />
+      <instance DB_ID="376438" displayName="Kanapin, EE, 2008-09-08 10:23:04" isShell="true" />
+      <instance DB_ID="383393" displayName="Kanapin, AA, 2008-11-26 13:49:44" isShell="true" />
+      <instance DB_ID="162607" displayName="Schmidt, EE, 2005-04-01 11:06:09" isShell="true" />
+      <instance DB_ID="386933" displayName="Mahajan, SS, 2008-11-27 13:16:57" isShell="true" />
+      <instance DB_ID="2133145" displayName="Weiser, JD" isShell="true" />
+      <instance DB_ID="1042299" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="258122" displayName="Kanapin, EE, 2008-03-27 12:15:20" isShell="true" />
+      <instance DB_ID="797782" displayName="Kanapin, AA" isShell="true" />
+      <instance DB_ID="171322" displayName="Schmidt, EE, 2006-02-06 10:50:16" isShell="true" />
+      <instance DB_ID="2454362" displayName="Weiser, JD" isShell="true" />
+      <instance DB_ID="447572" displayName="Kanapin, EE" isShell="true" />
+      <instance DB_ID="422569" displayName="Kanapin, EE" isShell="true" />
+      <instance DB_ID="2395859" displayName="Jassal, B, 2012-07-03" isShell="true" />
+      <instance DB_ID="1301023" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="615500" displayName="Kanapin, AA" isShell="true" />
+      <instance DB_ID="2455542" displayName="Weiser, JD" isShell="true" />
+      <instance DB_ID="2132408" displayName="Weiser, JD" isShell="true" />
+      <instance DB_ID="1169158" displayName="D'Eustachio, P, 2011-01-12" isShell="true" />
+      <instance DB_ID="357819" displayName="Kanapin, EE, 2008-06-18 10:45:39" isShell="true" />
+      <instance DB_ID="528085" displayName="Kanapin, AA" isShell="true" />
+      <instance DB_ID="1220942" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1173233" displayName="D'Eustachio, P, 2011-01-21" isShell="true" />
+      <instance DB_ID="-3" displayName="Naithani, sushma, 2012-10-05" isShell="false" isDirty="true">
+        <attribute name="author" class="Person" referTo="-4" />
+        <attribute name="DB_ID" value="-3" />
+        <attribute name="dateTime" value="20121005231704" />
+        <attribute name="_displayName" value="Naithani, sushma, 2012-10-05" />
+      </instance>
+      <instance DB_ID="423222" displayName="Kanapin, AA" isShell="true" />
+      <instance DB_ID="448165" displayName="Kanapin, AA" isShell="true" />
+      <instance DB_ID="938674" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1043152" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1221553" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1301626" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1552982" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1996190" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2133759" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2133760" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2133761" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2266115" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2266117" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2267216" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2455544" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="76326" displayName="Jassal, B, 2003-08-05 00:00:00" isShell="true" />
+      <instance DB_ID="113517" displayName="Schmidt, EE, 2004-06-09 05:19:12" isShell="true" />
+      <instance DB_ID="1816721" displayName="Jupe, S, 2011-10-25" isShell="true" />
+      <instance DB_ID="561081" displayName="Jassal, B, 2010-03-25" isShell="true" />
+      <instance DB_ID="1650793" displayName="Jupe, S, 2011-10-12" isShell="true" />
+      <instance DB_ID="1655892" displayName="Jassal, B, 2011-10-13" isShell="true" />
+      <instance DB_ID="1793191" displayName="Jassal, B, 2011-10-21" isShell="true" />
+      <instance DB_ID="2537470" displayName="Wu, G, 2012-10-26" isShell="true" />
+      <instance DB_ID="2581471" displayName="Jassal, B, 2012-11-13" isShell="true" />
+      <instance DB_ID="2586593" displayName="D'Eustachio, P, 2012-11-16" isShell="true" />
+    </InstanceEdit>
+    <ReferenceDatabase>
+      <instance DB_ID="1" displayName="GO" isShell="true" />
+      <instance DB_ID="1118109" displayName="RiceCyc" isShell="true" />
+      <instance DB_ID="4" displayName="EC" isShell="true" />
+      <instance DB_ID="2" displayName="UniProt" isShell="true" />
+    </ReferenceDatabase>
+    <ReferenceMolecule>
+      <instance DB_ID="1163031" displayName="gibberellin A24 [ChEBI:32906]" isShell="true" />
+      <instance DB_ID="114753" displayName="Succinate [ChEBI:15741]" isShell="true" />
+      <instance DB_ID="1162909" displayName="gibberellin A12 [ChEBI:30088]" isShell="true" />
+      <instance DB_ID="1164217" displayName="gibberellin A37 [ChEBI:29596]" isShell="true" />
+      <instance DB_ID="114728" displayName="H2O [ChEBI:15377]" isShell="true" />
+      <instance DB_ID="1163622" displayName="gibberellin A36 [ChEBI:29595]" isShell="true" />
+      <instance DB_ID="1163840" displayName="gibberellin A15 [ChEBI:29590]" isShell="true" />
+      <instance DB_ID="114744" displayName="2-Oxoglutarate [ChEBI:30915]" isShell="true" />
+      <instance DB_ID="1164349" displayName="GA13 [unknown:unknown]" isShell="true" />
+      <instance DB_ID="114734" displayName="Oxygen [ChEBI:15379]" isShell="true" />
+      <instance DB_ID="1164056" displayName="GA25 [unknown:unknown]" isShell="true" />
+      <instance DB_ID="1163242" displayName="gibberellin A9 [ChEBI:29605]" isShell="true" />
+      <instance DB_ID="114738" displayName="CO2 [ChEBI:16526]" isShell="true" />
+      <instance DB_ID="1164651" displayName="gibberellin A4 [ChEBI:32902]" isShell="true" />
+    </ReferenceMolecule>
+    <PathwayDiagram>
+      <instance DB_ID="-7" displayName="Diagram of gibberellin biosynthesis I (non C-3, non C-13 hydroxylation)" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="-7" />
+        <attribute name="representedPathway" class="Pathway" referTo="1119625" />
+        <attribute name="_displayName" value="Diagram of gibberellin biosynthesis I (non C-3, non C-13 hydroxylation)" />
+      </instance>
+    </PathwayDiagram>
+    <Person>
+      <instance DB_ID="1112777" displayName="Wu, G" isShell="true" />
+      <instance DB_ID="-4" displayName="Naithani, sushma" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="-4" />
+        <attribute name="surname" value="Naithani" />
+        <attribute name="firstname" value="sushma" />
+        <attribute name="_displayName" value="Naithani, sushma" />
+        <attribute name="affiliation" class="Affiliation" referTo="-5" />
+      </instance>
+    </Person>
+    <CatalystActivity>
+      <instance DB_ID="1119172" displayName="oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen of gibberellin 2-beta-dioxygenase 7  [cytosol]" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="1119172" />
+        <attribute name="physicalEntity" class="DefinedSet" referTo="1121727" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="_displayName" value="oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen of gibberellin 2-beta-dioxygenase 7  [cytosol]" />
+        <attribute name="activity" class="GO_MolecularFunction" referTo="724" />
+      </instance>
+      <instance DB_ID="1118824" displayName="oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen of gibberellin 2-beta-dioxygenase 7  [cytosol]" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="1118824" />
+        <attribute name="physicalEntity" class="DefinedSet" referTo="1121727" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="_displayName" value="oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen of gibberellin 2-beta-dioxygenase 7  [cytosol]" />
+        <attribute name="activity" class="GO_MolecularFunction" referTo="724" />
+      </instance>
+      <instance DB_ID="1118740" displayName="oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen of gibberellin 2-beta-dioxygenase 7  [cytosol]" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="1118740" />
+        <attribute name="physicalEntity" class="DefinedSet" referTo="1121727" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="_displayName" value="oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen of gibberellin 2-beta-dioxygenase 7  [cytosol]" />
+        <attribute name="activity" class="GO_MolecularFunction" referTo="724" />
+      </instance>
+      <instance DB_ID="1118641" displayName="oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors of gibberellin 2-beta-dioxygenase 7  [cytosol]" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="1118641" />
+        <attribute name="physicalEntity" class="DefinedSet" referTo="1121727" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="_displayName" value="oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors of gibberellin 2-beta-dioxygenase 7  [cytosol]" />
+        <attribute name="activity" class="GO_MolecularFunction" referTo="726" />
+      </instance>
+    </CatalystActivity>
+    <Species>
+      <instance DB_ID="186860" displayName="Oryza sativa" isShell="false" isDirty="false">
+        <attribute name="DB_ID" value="186860" />
+        <attribute name="superTaxon" class="Taxon" referTo="186856" />
+        <attribute name="created" class="InstanceEdit" referTo="186845" />
+        <attribute name="name" value="Oryza sativa" />
+        <attribute name="name" value="rice" />
+        <attribute name="_displayName" value="Oryza sativa" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="186858" />
+      </instance>
+      <instance DB_ID="-1" displayName="Oryza sativa subsp. japonica" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="-1" />
+        <attribute name="name" value="Oryza sativa subsp. japonica" />
+        <attribute name="_displayName" value="Oryza sativa subsp. japonica" />
+      </instance>
+    </Species>
+    <Reaction>
+      <instance DB_ID="1121207" displayName="GA9+alpha-ketoglutarate+O2-&gt;GA4+succinate+CO2" isShell="false" isDirty="true">
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="GA9+alpha-ketoglutarate+O2-&gt;GA4+succinate+CO2" />
+        <attribute name="name" value="RXN1F-165" />
+        <attribute name="name" value="biochemicalReaction86763" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1135083" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="71828" />
+        <attribute name="DB_ID" value="1121207" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1121547" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1121547" />
+        <attribute name="_displayName" value="GA9+alpha-ketoglutarate+O2-&gt;GA4+succinate+CO2" />
+        <attribute name="input" class="SimpleEntity" referTo="1131912" />
+        <attribute name="input" class="SimpleEntity" referTo="29406" />
+        <attribute name="input" class="SimpleEntity" referTo="29368" />
+        <attribute name="revised" class="InstanceEdit" referTo="-3" />
+        <attribute name="output" class="SimpleEntity" referTo="1130812" />
+        <attribute name="output" class="SimpleEntity" referTo="29434" />
+        <attribute name="output" class="SimpleEntity" referTo="113528" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1119768" displayName="GA15+alpha-ketoglutarate+O2-&gt;GA24+succinate+CO2+H2O" isShell="false" isDirty="true">
+        <attribute name="catalystActivity" class="CatalystActivity" referTo="1118641" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="GA15+alpha-ketoglutarate+O2-&gt;GA24+succinate+CO2+H2O" />
+        <attribute name="name" value="RXN1F-163" />
+        <attribute name="name" value="biochemicalReaction86791" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1153299" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="71828" />
+        <attribute name="DB_ID" value="1119768" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1121418" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1121418" />
+        <attribute name="_displayName" value="GA15+alpha-ketoglutarate+O2-&gt;GA24+succinate+CO2+H2O" />
+        <attribute name="input" class="SimpleEntity" referTo="1131412" />
+        <attribute name="input" class="SimpleEntity" referTo="29406" />
+        <attribute name="input" class="SimpleEntity" referTo="29368" />
+        <attribute name="revised" class="InstanceEdit" referTo="-3" />
+        <attribute name="output" class="SimpleEntity" referTo="113528" />
+        <attribute name="output" class="SimpleEntity" referTo="29356" />
+        <attribute name="output" class="SimpleEntity" referTo="29434" />
+        <attribute name="output" class="SimpleEntity" referTo="1131476" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1121418" displayName="GA12+O2+alpha-ketoglutarate-&gt;GA15+CO2+succinate" isShell="false" isDirty="true">
+        <attribute name="catalystActivity" class="CatalystActivity" referTo="1118740" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="GA12+O2+alpha-ketoglutarate-&gt;GA15+CO2+succinate" />
+        <attribute name="name" value="RXN1F-162" />
+        <attribute name="name" value="biochemicalReaction86809" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1147837" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="71828" />
+        <attribute name="DB_ID" value="1121418" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1121181" />
+        <attribute name="_displayName" value="GA12+O2+alpha-ketoglutarate-&gt;GA15+CO2+succinate" />
+        <attribute name="input" class="SimpleEntity" referTo="1132279" />
+        <attribute name="input" class="SimpleEntity" referTo="29406" />
+        <attribute name="input" class="SimpleEntity" referTo="29368" />
+        <attribute name="revised" class="InstanceEdit" referTo="-3" />
+        <attribute name="output" class="SimpleEntity" referTo="1131412" />
+        <attribute name="output" class="SimpleEntity" referTo="113528" />
+        <attribute name="output" class="SimpleEntity" referTo="29434" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1119764" displayName="GA24+alpha-ketoglutarate+O2-&gt;GA36+succinate+CO2" isShell="false" isDirty="true">
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="GA24+alpha-ketoglutarate+O2-&gt;GA36+succinate+CO2" />
+        <attribute name="name" value="RXN-6523" />
+        <attribute name="name" value="biochemicalReaction87032" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1139501" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="71828" />
+        <attribute name="DB_ID" value="1119764" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1119768" />
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+        <attribute name="_displayName" value="GA24+alpha-ketoglutarate+O2-&gt;GA36+succinate+CO2" />
+        <attribute name="input" class="SimpleEntity" referTo="1131476" />
+        <attribute name="input" class="SimpleEntity" referTo="29406" />
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+        <attribute name="revised" class="InstanceEdit" referTo="-3" />
+        <attribute name="output" class="SimpleEntity" referTo="1132169" />
+        <attribute name="output" class="SimpleEntity" referTo="29434" />
+        <attribute name="output" class="SimpleEntity" referTo="113528" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1121547" displayName="GA24+O2+alpha-ketoglutarate-&gt;GA9+CO2+succinate" isShell="false" isDirty="true">
+        <attribute name="catalystActivity" class="CatalystActivity" referTo="1118824" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="GA24+O2+alpha-ketoglutarate-&gt;GA9+CO2+succinate" />
+        <attribute name="name" value="RXN1F-164" />
+        <attribute name="name" value="biochemicalReaction86777" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1146365" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="71828" />
+        <attribute name="DB_ID" value="1121547" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1119768" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1119768" />
+        <attribute name="_displayName" value="GA24+O2+alpha-ketoglutarate-&gt;GA9+CO2+succinate" />
+        <attribute name="input" class="SimpleEntity" referTo="1131476" />
+        <attribute name="input" class="SimpleEntity" referTo="29406" />
+        <attribute name="input" class="SimpleEntity" referTo="29368" />
+        <attribute name="revised" class="InstanceEdit" referTo="-3" />
+        <attribute name="output" class="SimpleEntity" referTo="1131912" />
+        <attribute name="output" class="SimpleEntity" referTo="29434" />
+        <attribute name="output" class="SimpleEntity" referTo="113528" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1121181" displayName="GA15+alpha-ketoglutarate+O2-&gt;GA37+succinate+CO2" isShell="false" isDirty="true">
+        <attribute name="_doRelease" value="false" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="GA15+alpha-ketoglutarate+O2-&gt;GA37+succinate+CO2" />
+        <attribute name="name" value="RXN-6522" />
+        <attribute name="name" value="biochemicalReaction87040" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1134335" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="71828" />
+        <attribute name="DB_ID" value="1121181" />
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