Added taxon lookup table

svn path=/; revision=642

diff --git a/interactome_scripts/find_species.pl b/interactome_scripts/find_species.pl
index 47ea499f8e2f9ae1e9f4af67f5687451fec04326..7390c7e9ad83102b17e69c13e68d25861589d088 100755 (executable)
--- a/interactome_scripts/find_species.pl
+++ b/interactome_scripts/find_species.pl
@@ -1060,4 +1060,132 @@ sub retrieval_info {
        return ($method, $date);
 }
 
+sub find_taxon {
+       my $species = $_[0];
+       my %taxon_hash = (
+               'Aegilops_tauschii', '37682',
+               'Amborella_trichopoda', '13333',
+               'Arabidopsis_lyrata' , '59689',
+               'Arabidopsis_thaliana', '3702',
+               'Arachis_duranensis', '130453',
+               'Arachis_ipaensis', '130454',
+               'Batrachochytrium_dendrobatidis', '109871',
+               'Brachypodium_distachyon', '15368',
+               'Brachypodium_sylvaticum.Corv', '29664',
+               'Brachypodium_sylvaticum.Greece', '29664',
+               'Brachypodium_sylvaticum.Spain', '29664',
+               'Brassica_oleracea', '3712',
+               'Brassica_rapa' ,'3711',
+               'Caenorhabditis_elegans', '6239',
+               'Cajanus_cajan', '3821',
+               'Cannabis_sativa.Purple.Kush', '3483',
+               'Capsella_rubella', '81985',
+               'Capsicum_annuum', '4072',
+               'Carica_papaya', '3649',
+               'Chlamydomonas_reinhardtii', '3055',
+               'Cicer_arietinum', '3827',
+               'Citrullus_lanatus', '3654',
+               'Citrus_clementina', '85681',
+               'Citrus_sinensis', '2711',
+               'Coffea_canephora', '49390',
+               'Cucumis_sativus', '3659',
+               'Danio_rerio', '7955',
+               'Drosophila_melanogaster', '7227',
+               'Ectocarpus_siliculosus', '2880',
+               'Elaphocordyceps_capitata', '45325',
+               'Elaphocordyceps_ophioglossoides', '71617',
+               'Elaphocordyceps_paradoxa', '94208',
+               'Epichloe_festucae', '35717',
+               'Escherichia_coli', '562',
+               'Eucalyptus_grandis', '71139',
+               'Fragaria_vesca', '57918',
+               'Fusarium_graminearum', '5518',
+               'Fusarium_oxysporum.4287', '660037',
+               'Fusarium_verticillioides', '117187',
+               'Gadus_morhua', '8049',
+               'Gasterosteus_aculeatus', '69293',
+               'Glycine_max', '3847',
+               'Gossypium_raimondii', '29730',
+               'Homo_sapiens', '9606',
+               'Hordeum_vulgare', '4513',
+               'Jatropha_curcas', '180498',
+               'Kalanchoe_laxiflora', '1670617',
+               'Laccaria_bicolor', '29883',
+               'Leersia_perrieri', '77586',
+               'Linum_usitatissimum', '4006',
+               'Magnaporthe_grissa', '148305',
+               'Malus_domestica', '3750',
+               'Manihot_esculenta', '3983',
+               'Medicago_truncatula', '3880',
+               'Mimulus_guttatus', '4155',
+               'Mus_musculus', '10090',
+               'Musa_acuminata', '4641',
+               'Nectria_haematococca', '140110',
+               'Nelumbo_nucifera', '4432',
+               'Neurospora_crassa', '5141',
+               'Nostoc_punctiforme', '272131',
+               'Oncorhynchus_mykiss', '8022',
+               'Oryza_australiensis', '4532',
+               'Oryza_barthii', '65489',
+               'Oryza_brachyantha', '4533',
+               'Oryza_glaberrima', '4538',
+               'Oryza_glumaepatula', '40148',
+               'Oryza_granulata', '110450',
+               'Oryza_kasalath', '4527',
+               'Oryza_longistaminata', '4528',
+               'Oryza_meridionalis', '40149',
+               'Oryza_minuta', '63629',
+               'Oryza_nivara', '4536',
+               'Oryza_officinalis', '4535',
+               'Oryza_punctata', '4537',
+               'Oryza_rufipogon', '4529',
+               'Oryza_sativa.indica.gramene', '39946',
+               'Oryza_sativa.indica.iplant', '39946',
+               'Oryza_sativa.indica.IR29', '39946',
+               'Oryza_sativa.indica.pokkali', '39946',
+               'Oryza_sativa.japonica.iplant', '39947',
+               'Oryza_sativa.japonica.IRGSP', '39947',
+               'Oryza_sativa.japonica.MSU', '39947',
+               'Oryzias_latipes', '8090',
+               'Pediculus_humanus', '121225',
+               'Phaseolus_vulgaris', '3885',
+               'Phoenix_dactylifera', '42345',
+               'Phyllostachys_heterocycla', '38705',
+               'Physcomitrella_patens', '3218',
+               'Phytophthora_infestans', '4787',
+               'Picea_abies', '3329',
+               'Pinus_taeda', '3352',
+               'Populus_trichocarpa', '3694',
+               'Populus_trichocarpa.ver3', '3694',
+               'Prunus_persica', '3760',
+               'Rattus_norvegicus', '10116',
+               'Rhizopus_oryzae', '64495',
+               'Ricinus_communis', '3988',
+               'Saccharomyces_cerevisiae', '4932',
+               'Salvia_hispancia.salba', '49212',
+               'Salvia_splendens', '180675',
+               'Schizosaccharomyces_pombe', '4896',
+               'Selaginella_moellendorffii', '88036',
+               'Setaria_italica', '4555',
+               'Solanum_lycopersicum', '4081',
+               'Solanum_tuberosum', '4113',
+               'Sorghum_bicolor', '4558',
+               'Synechocystis_pcc6803', '1148',
+               'Takifugu_rubripes', '31033',
+               'Tetraodon_nigroviridis', '99883',
+               'Theobroma_cacao', '3641',
+               'Tolypocladium_inflatum', '29910',
+               'Trichodesmium_erythraeum', '1206',
+               'Triticum_aestivum', '4565',
+               'Triticum_monococcum.DV92', '4568',
+               'Triticum_monococcum.G3116', '4568',
+               'Triticum_turgidum', '4571',
+               'Triticum_urartu', '4572',
+               'Vitis_vinifera', '29760',
+               'Zea_mays', '4577',
+               );
+       my $taxon = $taxon_hash{$species};
+       return $taxon;
+}      
+
 1;