COMMAND TO RUN PREDOTAR

svn path=/; revision=208

diff --git a/interpro/RUN_PREDOTAR.txt b/interpro/RUN_PREDOTAR.txt
new file mode 100644 (file)
index 0000000..7552b7b
--- /dev/null
+++ b/interpro/RUN_PREDOTAR.txt
@@ -0,0 +1,5 @@
+#RUN THIS COMMAND AT THE COMMAND LINE.
+#REPLACE species with the speciesname
+
+Prompt>java -jar predotar.jar p /lemma/Rajani/iprscan/species.seq > species_predotar.txt
+

diff --git a/interpro/RUN_TMHMM.pl b/interpro/RUN_TMHMM.pl
index 465999bcdb26a76cf95e0ea2f870d3ff3380d8c4..fa9212ee0ccdf022573f285b9e2b65a6ef1ab733 100644 (file)
--- a/interpro/RUN_TMHMM.pl
+++ b/interpro/RUN_TMHMM.pl
@@ -58,7 +58,7 @@ open(in_file,$file);
                 print FILE1 "$key\n";
                 print FILE1 "$value";
 
-                $status = system("/lemma/SignalP/TMHMM2.0c/bin/tmhmm  tmhmm species.seq >> species_tmhmmdata.txt");
+                $status = system("/lemma/SignalP/TMHMM2.0c/bin/tmhmm  tmhmm species.seq >> species_tmhmm.txt");
 
 
             }