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Fixing a few more rice QTL annotations
authorcooperl <cooperl@localhost>
Thu, 14 Mar 2019 18:47:29 +0000 (18:47 +0000)
committercooperl <cooperl@localhost>
Thu, 14 Mar 2019 18:47:29 +0000 (18:47 +0000)
svn path=/; revision=894

po-associations/po_anatomy_qtl_oryza_gramene.assoc patch | blob | history
po-associations/po_growth_qtl_oryza_gramene.assoc patch | blob | history

diff --git a/po-associations/po_anatomy_qtl_oryza_gramene.assoc b/po-associations/po_anatomy_qtl_oryza_gramene.assoc
index e229d1f5ede898e469e3da32c585b6c865d81a4e..e1e9d721e59e95b48a1e6c019873dc7b12a671dc 100644 (file)
--- a/po-associations/po_anatomy_qtl_oryza_gramene.assoc
+++ b/po-associations/po_anatomy_qtl_oryza_gramene.assoc
@@ -51,7 +51,6 @@ GR_QTL        AQEZ001 ALSN            PO:0009011      GR_ref:11453    IC              A       aluminum sensitivity            QTL     tax
 GR_QTL AQEZ003 ALSN            PO:0009011      GR_ref:11453    IC              A       aluminum sensitivity            QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQEZ008 ALSN            PO:0009011      GR_ref:11453    IC              A       aluminum sensitivity            QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQEZ004 ALSN            PO:0009011      GR_ref:11453    IC              A       aluminum sensitivity            QTL     taxon:4530      20090923        Gramene         
-
 GR_QTL AQFA002 AMYCN           PO:0030104      GR_ref:8297     IMP             A       amylose content ac12.1  QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQGA007 AMYCN           PO:0030104      GR_ref:11453    IC              A       amylose content         QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQGA015 AMYCN           PO:0030104      GR_ref:11453    IC              A       amylose content         QTL     taxon:4530      20090923        Gramene         
@@ -103,7 +102,6 @@ GR_QTL      AQFA005 AMYCN           PO:0030104      GR_ref:8297     IMP             A       amylose content ac2.2   QTL     ta
 GR_QTL AQFU017 AMYCN           PO:0030104      GR_ref:8212     IMP             A       amylose content amy8    QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQBP002 AMYCN           PO:0030104      GR_ref:11453    IC              A       amylose content Wx      QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQGA014 AMYCN           PO:0030104      GR_ref:11453    IC              A       amylose content         QTL     taxon:4530      20090923        Gramene         
-
 GR_QTL AQF065  ANTLG           PO:0009066      GR_ref:7750     IMP             A       anther length           QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQCC002 ANTLG           PO:0009066      GR_ref:7816     IMP             A       anther length   qATL-9  QTL     taxon:4530      20090923        Gramene         
 GR_QTL CQO2    ANTLG           PO:0009066      GR_ref:7827     IMP             A       anther length   ctb-1   QTL     taxon:4530      20090923        Gramene         
@@ -141,7 +139,6 @@ GR_QTL      AQF113  APIHLG          PO:0006033      GR_ref:7750     IMP             A       apiculus hair length            QTL     ta
 GR_QTL AQF108  APIHLG          PO:0006033      GR_ref:7750     IMP             A       apiculus hair length            QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQF116  APIHLG          PO:0006033      GR_ref:7750     IMP             A       apiculus hair length            QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQF110  APIHLG          PO:0006033      GR_ref:7750     IMP             A       apiculus hair length            QTL     taxon:4530      20090923        Gramene         
-
 GR_QTL CQAP3   AROMA           PO:0009011      GR_ref:11453    IC              A       scent           QTL     taxon:4530      20090923        Gramene         
 GR_QTL CQAP3   AROMA           PO:0030104      GR_ref:2517     IMP             A       scent           QTL     taxon:4530      20090923        Gramene         
 GR_QTL CQAP1   AROMA           PO:0009011      GR_ref:11453    IC              A       scent           QTL     taxon:4530      20090923        Gramene         
@@ -2581,8 +2578,7 @@ GR_QTL    CQB8    GRNB            PO:0030104      GR_ref:11453    IC              A       grain number    gn-4    QTL     taxon:4530
 GR_QTL AQAG024 GRNB            PO:0030104      GR_ref:11453    IC              A       grain number    gp1b    QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQAG027 GRNB            PO:0030104      GR_ref:11453    IC              A       grain number    gp7a    QTL     taxon:4530      20090923        Gramene         
 GR_QTL CQAJ6   GRNB            PO:0030104      GR_ref:11453    IC              A       grain number    gp3     QTL     taxon:4530      20090923        Gramene         
-GR_QTL AQEE004 GROATPCENT              PO:0030104      GR_ref:11453    IC              A       groat percentage                QTL     taxon:4530      20090923        Gramene         
-GR_QTL AQEE004 GROATPCENT              PO:0009025      GR_ref:8143|PMID:14513216       IMP             A       groat percentage                QTL     taxon:4530      20090923        Gramene         
+GR_QTL AQEE004 GROATPCENT              PO:0030104      GR_ref:11453|GR_ref:8143|PMID:14513216  IC              A       groat percentage                QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQFE103 GRSH            PO:0030104      GR_ref:8323     IMP             A       grain shattering        sh1.1   QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQFE103 GRSH            PO:0030104      GR_ref:11453    IC              A       grain shattering        sh1.1   QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQFE107 GRSH            PO:0030104      GR_ref:8323     IMP             A       grain shattering        sh7.1   QTL     taxon:4530      20090923        Gramene         
diff --git a/po-associations/po_growth_qtl_oryza_gramene.assoc b/po-associations/po_growth_qtl_oryza_gramene.assoc
index c757070abba0ec6e3b58b180b90ce1cb90f54da0..707e90a87ed11ee0df1238ec628cf35e2874aa6e 100644 (file)
--- a/po-associations/po_growth_qtl_oryza_gramene.assoc
+++ b/po-associations/po_growth_qtl_oryza_gramene.assoc
@@ -3671,8 +3671,7 @@ GR_QTL    AQBM011 GRNPTLYLDFQ             PO:0009012      GR_ref:11453    IC              G       green plantlet yield f
 GR_QTL AQBM011 GRNPTLYLDFQ             PO:0007033      GR_ref:11453    IC              G       green plantlet yield frequency  gpy-10  QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQBM010 GRNPTLYLDFQ             PO:0009012      GR_ref:11453    IC              G       green plantlet yield frequency  gpy-9   QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQBM010 GRNPTLYLDFQ             PO:0007033      GR_ref:11453    IC              G       green plantlet yield frequency  gpy-9   QTL     taxon:4530      20090923        Gramene         
-GR_QTL AQEE004 GROATPCENT              PO:0007017      GR_ref:8143|PMID:14513216       IMP             G       groat percentage                QTL     taxon:4530      20090923        Gramene         
-GR_QTL AQEE004 GROATPCENT              PO:0007038      GR_ref:11453    IC              G       groat percentage                QTL     taxon:4530      20090923        Gramene         
+GR_QTL AQEE004 GROATPCENT              PO:0007038      GR_ref:11453|GR_ref:8143|PMID:14513216  IC              G       groat percentage                QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQFE103 GRSH            PO:0007038      GR_ref:8323     IMP             G       grain shattering        sh1.1   QTL     taxon:4530      20090923        Gramene         
 GR_QTL AQFE107 GRSH            PO:0007038      GR_ref:8323     IMP             G       grain shattering        sh7.1   QTL     taxon:4530      20090923        Gramene         
 GR_QTL CQAH4   GRSH            PO:0007132      GR_ref:6969     IMP             G       grain shattering        qSHT-1  QTL     taxon:4530      20090923        Gramene         
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