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authorelserj <elserj@localhost>
Wed, 19 Feb 2020 21:02:53 +0000 (21:02 +0000)
committerelserj <elserj@localhost>
Wed, 19 Feb 2020 21:02:53 +0000 (21:02 +0000)
svn path=/; revision=669

interactome_scripts/association_file_from_orthologs_simple.pl

index 16e7dcaf58df8bc7c78a5db575b3d2f01722dfe1..280cbbdfbbd00d7eddd58bad083c0ea0e6ac647a 100755 (executable)
@@ -18,7 +18,7 @@ print "$curr_date\n";
 if ($#ARGV !=2) {
        print "usage: association_file_from_orthologs.pl in_assoc_file ortho_file out_file\n";
        exit;
-
+}
        
 # Grab the find_species subroutines to get the species and taxon id
 if(-e "$ENV{HOME}/scripts/jaiswallab/interactome_scripts/find_species.pl") {
@@ -66,7 +66,7 @@ while(<INGAFFILE>) {
                #check if symbol found in %gene_hash
                if(defined($ortho_hash{$db_obj_name})) {
                                my $ortho_gene = $ortho_hash{$db_obj_name};
-                               print OUTFILE "MaizeGDB\t$ortho_gene\t$ortho_gene\t$qual\t$ont_id\tPMID:24919147|PMID:21186353\tISO\tAGI_LocusCode:$db_obj_name\t$aspect\t$ortho_gene\t\t$db_obj_type\ttaxon:$new_taxon\t$curr_date\tPlanteome:Justin_Elser\t$annot_ext\t$gp_form_id\n";
+                               print OUTFILE "EnsemblPlants\t$ortho_gene\t$ortho_gene\t$qual\t$ont_id\tPMID:24919147|PMID:21186353\tISO\tAGI_LocusCode:$db_obj_name\t$aspect\t$ortho_gene\t\t$db_obj_type\ttaxon:$new_taxon\t$curr_date\tPlanteome:Justin_Elser\t$annot_ext\t$gp_form_id\n";
                }
                
 }