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took out print line in cucumber
authorelserj <elserj@localhost>
Thu, 16 Sep 2010 23:37:28 +0000 (23:37 +0000)
committerelserj <elserj@localhost>
Thu, 16 Sep 2010 23:37:28 +0000 (23:37 +0000)
svn path=/; revision=36

interactome_scripts/find_species.pl

index 9deb175abfde08f6524621ea1b71a19b855ce5ff..3c4c8f3b926c1faa77424fded573054428760768 100755 (executable)
@@ -119,9 +119,8 @@ sub find_gene {
                my ($name,$locus_id,$chrom,$transcript) = split(/\|/,$gene_header);
                $gene = $transcript; #???
        }elsif ($species eq "Cucumis_sativus") {
-               my ($name,$gene_id,$scaffold,$unknown) = split(/\|/,$gene_header);
-               print "$name\t$gene_id\t$scaffold\t$unknown\n";
-               $gene = $gene_id;
+               my ($name,$main_isomer,$scaffold,$isomer) = split(/\|/,$gene_header);
+               $gene = $isomer;
        }elsif ($species eq "Danio_rerio") {
                my ($gene_id,$transcript) = split(/\|/,$gene_header);
                $gene = $gene_id;