Moving a couple more files into test folder

svn path=/; revision=1038

diff --git a/po-associations/test_SoyBase/SoyBase_QTLs_PO_Test.assoc b/po-associations/test_SoyBase/SoyBase_QTLs_PO_Test.assoc
new file mode 100644 (file)
index 0000000..f66f133
--- /dev/null
+++ b/po-associations/test_SoyBase/SoyBase_QTLs_PO_Test.assoc
@@ -0,0 +1,20 @@
+!gaf-version: 2.0\r
+!DB    DB Object ID    DB Object Symbol        Qualifier       TO_ID   Reference       Evidence code   With or From    Aspect  DB Object Name  synonym DB_Object_Type  Taxon   date    assigned by             \r
+SOY_QTL        Al_tolerance_1-1        Al tolerance 1-1        PO:0000003      Aluminum Tolerance      SOY_ref:SoyBase1219001019       QTL     taxon:3847      20130806        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_1-2        Al tolerance 1-2        PO:0000003      Aluminum Tolerance      SOY_ref:SoyBase1219001019       QTL     taxon:3847      20130806        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_1-3        Al tolerance 1-3        PO:0000003      Aluminum Tolerance      SOY_ref:SoyBase1219001019       QTL     taxon:3847      20130806        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_1-4        Al tolerance 1-4        PO:0000003      Aluminum Tolerance      SOY_ref:SoyBase1219001019       QTL     taxon:3847      20130806        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_1-5        Al tolerance 1-5        PO:0000003      Aluminum Tolerance      SOY_ref:SoyBase1219001019       QTL     taxon:3847      20130806        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_1-6        Al tolerance 1-6        PO:0000003      Aluminum Tolerance      SOY_ref:SoyBase1219001019       QTL     taxon:3847      20130806        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_2-1        Al tolerance 2-1        PO:0000003      Aluminum Tolerance      SOY_ref:RGB20110708.1   QTL     taxon:3847      20130806        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_2-2        Al tolerance 2-2        PO:0000003      Aluminum Tolerance      SOY_ref:RGB20110708.1   QTL     taxon:3847      20130806        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_2-3        Al tolerance 2-3        PO:0000003      Aluminum Tolerance      SOY_ref:RGB20110708.1   QTL     taxon:3847      20130806        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_3-1        Al tolerance 3-1        PO:0000003      Aluminum Tolerance      SOY_ref:RGB20111024.1   QTL     taxon:3847      20230115        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_3-2        Al tolerance 3-2        PO:0000003      Aluminum Tolerance      SOY_ref:RGB20111024.1   QTL     taxon:3847      20230115        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_3-3        Al tolerance 3-3        PO:0000003      Aluminum Tolerance      SOY_ref:RGB20111024.1   QTL     taxon:3847      20230115        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_3-4        Al tolerance 3-4        PO:0000003      Aluminum Tolerance      SOY_ref:RGB20111024.1   QTL     taxon:3847      20230115        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_3-5        Al tolerance 3-5        PO:0000003      Aluminum Tolerance      SOY_ref:RGB20111024.1   QTL     taxon:3847      20230115        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_3-6        Al tolerance 3-6        PO:0000003      Aluminum Tolerance      SOY_ref:RGB20111024.1   QTL     taxon:3847      20230115        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_3-7        Al tolerance 3-7        PO:0000003      Aluminum Tolerance      SOY_ref:RGB20111024.1   QTL     taxon:3847      20230115        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_3-8        Al tolerance 3-8        PO:0000003      Aluminum Tolerance      SOY_ref:RGB20111024.1   QTL     taxon:3847      20230115        SoyBase:Rex_Nelson              \r
+SOY_QTL        Al_tolerance_3-9        Al tolerance 3-9        PO:0000003      Aluminum Tolerance      SOY_ref:RGB20111024.1   QTL     taxon:3847      20230115        SoyBase:Rex_Nelson              
\ No newline at end of file

diff --git a/po-associations/test_SoyBase/Soybase_QTL_list.txt b/po-associations/test_SoyBase/Soybase_QTL_list.txt
new file mode 100644 (file)
index 0000000..7f6189e
--- /dev/null
+++ b/po-associations/test_SoyBase/Soybase_QTL_list.txt
@@ -0,0 +1,4587 @@
+Acid_phosphatase_activity,_variable_P_1-1
+Acid_phosphatase_activity,_variable_P_1-2
+Acid_phosphatase_activity,_variable_P_1-3
+Acid_phosphatase_activity,_variable_P_1-4
+Acid_phosphatase_activity,_variable_P_1-5
+Acid_phosphatase_activity,_variable_P_1-6
+Acid_phosphatase_activity,_variable_P_1-7
+Al_tolerance_1-1
+Al_tolerance_1-2
+Al_tolerance_1-3
+Al_tolerance_1-4
+Al_tolerance_1-5
+Al_tolerance_1-6
+Al_tolerance_2-1
+Al_tolerance_2-2
+Al_tolerance_2-3
+Al_tolerance_3-1
+Al_tolerance_3-2
+Al_tolerance_3-3
+Al_tolerance_3-4
+Al_tolerance_3-5
+Al_tolerance_3-6
+Al_tolerance_3-7
+Al_tolerance_3-8
+Al_tolerance_3-9
+Asian_Soybean_Rust_1-1
+Asian_Soybean_Rust_2-1
+Asian_Soybean_Rust_2-2
+Asian_Soybean_Rust_2-3
+Asian_Soybean_Rust_2-4
+Branching_1-1
+Branching_1-2
+Branching_1-3
+Branching_1-4
+Branching_1-5
+Branching_1-6
+Branching_1-7
+Branching_2-1
+Branching_3-1
+Branching_3-2
+Branching_3-3
+Branching_3-4
+Branching_3-5
+Branching_4-1
+Branching_4-2
+Branching_4-3
+Branching_4-4
+Branching_5-1
+Branching_5-2
+Branching_5-3
+Branching_5-4
+BSR_1-1
+BSR_1-2
+BSR_2-1
+BSR_3-1
+BSR_4-1
+BSR_5-1
+BSR_5-2
+BSR_6-1
+BSR_6-10
+BSR_6-2
+BSR_6-3
+BSR_6-4
+BSR_6-5
+BSR_6-6
+BSR_6-7
+BSR_6-8
+BSR_6-9
+Canopy_height_1-1
+Canopy_height_1-2
+Canopy_height_2-1
+Canopy_wilt_1-1
+Canopy_wilt_1-2
+Canopy_wilt_1-3
+Canopy_wilt_1-4
+Canopy_wilt_2-1
+Canopy_wilt_2-2
+Canopy_wilt_2-3
+Canopy_wilt_2-4
+Canopy_wilt_2-5
+Canopy_wilt_2-6
+Canopy_wilt_2-7
+Canopy_wilt_3-1
+Canopy_wilt_3-10
+Canopy_wilt_3-11
+Canopy_wilt_3-12
+Canopy_wilt_3-13
+Canopy_wilt_3-2
+Canopy_wilt_3-3
+Canopy_wilt_3-4
+Canopy_wilt_3-5
+Canopy_wilt_3-6
+Canopy_wilt_3-7
+Canopy_wilt_3-8
+Canopy_wilt_3-9
+Canopy_wilt_4-1
+Canopy_wilt_4-2
+Canopy_wilt_4-3
+Canopy_wilt_4-4
+Canopy_wilt_4-5
+Canopy_wilt_4-6
+Canopy_wilt_4-7
+Canopy_wilt_5-1
+Canopy_wilt_5-2
+Canopy_wilt_5-3
+Canopy_wilt_5-4
+Canopy_wilt_6-1
+Canopy_wilt_6-2
+Canopy_wilt_6-3
+Canopy_wilt_6-4
+Carbon_isotope_discrimination_1-1
+Carbon_isotope_discrimination_1-2
+Carbon_isotope_discrimination_1-3
+Carbon_isotope_discrimination_1-4
+Carbon_isotope_discrimination_1-5
+Cellwall_polysacch_composition_1-1
+Chlorimuron_sensitivity_1-1
+Chlorimuron_sensitivity_1-10
+Chlorimuron_sensitivity_1-11
+Chlorimuron_sensitivity_1-2
+Chlorimuron_sensitivity_1-3
+Chlorimuron_sensitivity_1-4
+Chlorimuron_sensitivity_1-5
+Chlorimuron_sensitivity_1-6
+Chlorimuron_sensitivity_1-7
+Chlorimuron_sensitivity_1-8
+Chlorimuron_sensitivity_1-9
+Chlorimuron_sensitivity_2-1
+Chlorimuron_sensitivity_2-2
+Chlorimuron_sensitivity_2-3
+Chlorosis,_leaflet_Mn_induced_1-1
+Chlorosis,_leaflet_Mn_induced_1-2
+Common_cutworm_1-1
+Common_cutworm_1-2
+Common_cutworm_2-1
+Corn_earworm_1-1
+Corn_earworm_1-2
+Corn_earworm_1-3
+Corn_earworm_2-1
+Corn_earworm_2-2
+Corn_earworm_2-3
+Corn_earworm_3-1
+Corn_earworm_3-2
+Corn_earworm_4-1
+Corn_earworm_5-1
+Corn_earworm_5-2
+Corn_earworm_6-1
+Corn_earworm_6-2
+Corn_earworm_6-3
+Corn_earworm_7-1
+Corn_earworm_7-2
+Corn_earworm_7-3
+Corn_earworm_7-4
+Corn_earworm_7-5
+Corn_earworm_8-1
+Corn_earworm_8-2
+Corn_earworm_8-3
+Corn_earworm_9-1
+Corn_earworm_9-2
+Corn_earworm_9-3
+Corn_earworm_9-4
+Corn_earworm_9-5
+cqR8_Full_maturity-001
+cqSCN-001
+cqSCN-001
+cqSCN-001
+cqSCN-001
+cqSCN-001
+cqSCN-002
+cqSCN-002
+cqSCN-002
+cqSCN-002
+cqSCN-002
+cqSCN-002
+cqSCN-002
+cqSCN-003
+cqSCN-005
+cqSCN-006
+cqSCN-007
+cqSDS-001
+cqSeed_oil-001
+cqSeed_oil-002
+cqSeed_oil-003
+cqSeed_oil-004
+cqSeed_oil-005
+cqSeed_oil-006
+cqSeed_oil-007
+cqSeed_oil-008
+cqSeed_oil-009
+cqSeed_oil-010
+cqSeed_oil-011
+cqSeed_oil-012
+cqSeed_oil-013
+cqSeed_oil-014
+cqSeed_oil-015
+cqSeed_oil-016
+cqSeed_phytate-001
+cqSeed_phytate-002
+cqSeed_protein-001
+cqSeed_protein-002
+cqSeed_protein-003
+cqSeed_protein-004
+cqSeed_protein-005
+cqSeed_protein-006
+cqSeed_protein-007
+cqSeed_protein-008
+cqSeed_protein-009
+cqSeed_protein-010
+cqSeed_protein-011
+cqSeed_protein-012
+cqSeed_protein-013
+cqSeed_protein-014
+cqSeed_protein-015
+cqSeed_protein-016
+cqSeed_weight-001
+cqSeed_weight-002
+cqSeed_weight-003
+cqSeed_weight-004
+cqSeed_weight-005
+cqSeed_weight-006
+cqSeed_weight-007
+cqSeed_weight-008
+cqSeed_weight-009
+cqSeed_weight-010
+cqSeed_weight-011
+cqSeed_weight-012
+cqSeed_weight-013
+cqSeed_yield-001
+Days_to_germination_1-1
+Days_to_germination_1-2
+Days_to_germination_1-3
+Drought_index_1-1
+Drought_index_1-10
+Drought_index_1-2
+Drought_index_1-3
+Drought_index_1-4
+Drought_index_1-5
+Drought_index_1-6
+Drought_index_1-7
+Drought_index_1-8
+Drought_index_1-9
+Drought_tolerance_6-1
+Drought_tolerance_6-2
+Drought_tolerance_6-3
+Drought_tolerance_6-4
+Fe_effic_1-1
+Fe_effic_1-2
+Fe_effic_1-3
+Fe_effic_1-4
+Fe_effic_1-5
+Fe_effic_10-1
+Fe_effic_10-2
+Fe_effic_10-3
+Fe_effic_11-1
+Fe_effic_11-2
+Fe_effic_11-3
+Fe_effic_12-1
+Fe_effic_12-2
+Fe_effic_13-1
+Fe_effic_13-2
+Fe_effic_13-3
+Fe_effic_14-1
+Fe_effic_2-1
+Fe_effic_3-1
+Fe_effic_3-2
+Fe_effic_3-3
+Fe_effic_3-4
+Fe_effic_4-1
+Fe_effic_4-2
+Fe_effic_4-3
+Fe_effic_5-1
+Fe_effic_5-2
+Fe_effic_6-1
+Fe_effic_6-2
+Fe_effic_7-1
+Fe_effic_7-2
+Fe_effic_8-1
+Fe_effic_8-2
+Fe_effic_8-3
+Fe_effic_8-4
+Fe_effic_9-1
+Fe_effic_9-2
+Fe_effic_9-3
+Fe_effic_9-4
+Fe_effic_9-5
+First_flower_1-1
+First_flower_1-2
+First_flower_1-3
+First_flower_10-1
+First_flower_10-2
+First_flower_11-1
+First_flower_11-2
+First_flower_11-3
+First_flower_11-4
+First_flower_12-1
+First_flower_12-2
+First_flower_12-3
+First_flower_12-4
+First_flower_12-5
+First_flower_12-6
+First_flower_12-7
+First_flower_12-8
+First_flower_13-1
+First_flower_13-10
+First_flower_13-2
+First_flower_13-3
+First_flower_13-4
+First_flower_13-5
+First_flower_13-6
+First_flower_13-7
+First_flower_13-8
+First_flower_13-9
+First_flower_15-1
+First_flower_15-2
+First_flower_16-1
+First_flower_16-2
+First_flower_16-3
+First_flower_16-4
+First_flower_18-1
+First_flower_18-2
+First_flower_19-1
+First_flower_19-2
+First_flower_2-1
+First_flower_2-2
+First_flower_2-3
+First_flower_20-1
+First_flower_20-2
+First_flower_20-3
+First_flower_21-1
+First_flower_21-2
+First_flower_21-3
+First_flower_21-4
+First_flower_21-5
+First_flower_22-1
+First_flower_22-2
+First_flower_22-3
+First_flower_22-4
+First_flower_23-1
+First_flower_24-1
+First_flower_24-2
+First_flower_24-3
+First_flower_24-4
+First_flower_25-1
+First_flower_25-2
+First_flower_25-3
+First_flower_25-4
+First_flower_26-1
+First_flower_26-10
+First_flower_26-11
+First_flower_26-12
+First_flower_26-13
+First_flower_26-14
+First_flower_26-15
+First_flower_26-16
+First_flower_26-17
+First_flower_26-18
+First_flower_26-2
+First_flower_26-3
+First_flower_26-4
+First_flower_26-5
+First_flower_26-6
+First_flower_26-7
+First_flower_26-8
+First_flower_26-9
+First_flower_27-1
+First_flower_3-1
+First_flower_3-2
+First_flower_3-3
+First_flower_3-4
+First_flower_4-1
+First_flower_4-2
+First_flower_4-3
+First_flower_4-4
+First_flower_5-1
+First_flower_5-2
+First_flower_5-3
+First_flower_6-1
+First_flower_6-2
+First_flower_6-3
+First_flower_7-1
+First_flower_7-2
+First_flower_7-3
+First_flower_8-1
+First_flower_8-2
+First_flower_8-3
+First_flower_8-4
+First_flower_9-1
+First_flower_9-2
+First_flower_9-3
+Flood_tolerance_1-1
+Flood_tolerance_2-1
+Flood_tolerance_3-1
+Flood_tolerance_3-2
+Flood_tolerance_4-1
+Flood_tolerance_4-10
+Flood_tolerance_4-11
+Flood_tolerance_4-12
+Flood_tolerance_4-13
+Flood_tolerance_4-14
+Flood_tolerance_4-2
+Flood_tolerance_4-3
+Flood_tolerance_4-4
+Flood_tolerance_4-5
+Flood_tolerance_4-6
+Flood_tolerance_4-7
+Flood_tolerance_4-8
+Flood_tolerance_4-9
+Flood_tolerance_6-1
+Flood_tolerance_6-2
+Flood_tolerance_6-3
+Flood_tolerance_6-4
+Flood_tolerance_6-5
+Flood_tolerance_7-1
+Flood_tolerance_7-2
+Flood_tolerance_7-3
+Flood_tolerance_7-4
+Flooding_yield_index_1-1
+Flooding_yield_index_1-2
+Flooding_yield_index_1-3
+Flooding_yield_index_1-4
+Flower_color_1-1
+Flower_form_1-1
+Flower_form_1-2
+Flower_form_1-3
+Flower_form_1-4
+Flower_number_1-1
+Flower_number_1-10
+Flower_number_1-11
+Flower_number_1-12
+Flower_number_1-2
+Flower_number_1-3
+Flower_number_1-4
+Flower_number_1-5
+Flower_number_1-6
+Flower_number_1-7
+Flower_number_1-8
+Flower_number_1-9
+Fusarium_root_rot_1-1
+Fusarium_root_rot_1-2
+Fusarium_root_rot_1-3
+Hypocotyl_length_1-1
+Hypocotyl_length_1-2
+Hypocotyl_length_1-3
+Hypocotyl_length_2-1
+Hypocotyl_length_2-2
+Hypocotyl_length_3-1
+Indo_soy_dwarf_virus_1-1
+Internode_length_1-1
+Internode_length_1-10
+Internode_length_1-11
+Internode_length_1-12
+Internode_length_1-13
+Internode_length_1-14
+Internode_length_1-15
+Internode_length_1-16
+Internode_length_1-2
+Internode_length_1-3
+Internode_length_1-4
+Internode_length_1-5
+Internode_length_1-6
+Internode_length_1-7
+Internode_length_1-8
+Internode_length_1-9
+Internode_length_2-1
+Internode_length_2-10
+Internode_length_2-11
+Internode_length_2-12
+Internode_length_2-2
+Internode_length_2-3
+Internode_length_2-4
+Internode_length_2-5
+Internode_length_2-6
+Internode_length_2-7
+Internode_length_2-8
+Internode_length_2-9
+Japanese_beetle_resistance_1-1
+Japanese_beetle_resistance_1-2
+Japanese_beetle_resistance_1-3
+Japanese_beetle_resistance_1-4
+Japanese_beetle_resistance_1-5
+Japanese_beetle_resistance_1-6
+Japanese_beetle_resistance_1-7
+Japanese_beetle_resistance_1-8
+Jav_root-knot_nematode_1-1
+Jav_root-knot_nematode_1-1
+Jav_root-knot_nematode_1-2
+Jav_root-knot_nematode_1-2
+Jav_root-knot_nematode_1-3
+Jav_root-knot_nematode_1-3
+Jav_root-knot_nematode_1-4
+Jav_root-knot_nematode_1-4
+Jav_root-knot_nematode_1-5
+Jav_root-knot_nematode_1-5
+Jav_root-knot_nematode_1-6
+Jav_root-knot_nematode_1-6
+Jav_root-knot_nematode_1-7
+Jav_root-knot_nematode_1-7
+Jav_root-knot_nematode_1-8
+Jav_root-knot_nematode_1-8
+Jav_root-knot_nematode_2-1
+Lateral_root_size,_variable_P_1-1
+Leaflet_area_1-1
+Leaflet_area_1-2
+Leaflet_area_1-3
+Leaflet_area_1-4
+Leaflet_area_1-5
+Leaflet_area_1-6
+Leaflet_area_2-1
+Leaflet_area_2-2
+Leaflet_area_2-3
+Leaflet_area_3-1
+Leaflet_area_3-2
+Leaflet_area_3-3
+Leaflet_area_3-4
+Leaflet_area_4-1
+Leaflet_area_4-2
+Leaflet_area_4-3
+Leaflet_area_4-4
+Leaflet_area_5-1
+Leaflet_area_6-1
+Leaflet_area_6-2
+Leaflet_area_6-3
+Leaflet_area_7-1
+Leaflet_area_7-2
+Leaflet_area_8-1
+Leaflet_area_8-2
+Leaflet_area_9-1
+Leaflet_area_9-10
+Leaflet_area_9-2
+Leaflet_area_9-3
+Leaflet_area_9-4
+Leaflet_area_9-5
+Leaflet_area_9-6
+Leaflet_area_9-7
+Leaflet_area_9-8
+Leaflet_area_9-9
+Leaflet_ash_1-1
+Leaflet_ash_1-10
+Leaflet_ash_1-11
+Leaflet_ash_1-2
+Leaflet_ash_1-3
+Leaflet_ash_1-4
+Leaflet_ash_1-5
+Leaflet_ash_1-6
+Leaflet_ash_1-7
+Leaflet_ash_1-8
+Leaflet_ash_1-9
+Leaflet_chlorophyll_1-1
+Leaflet_chlorophyll_1-10
+Leaflet_chlorophyll_1-11
+Leaflet_chlorophyll_1-12
+Leaflet_chlorophyll_1-13
+Leaflet_chlorophyll_1-14
+Leaflet_chlorophyll_1-15
+Leaflet_chlorophyll_1-16
+Leaflet_chlorophyll_1-2
+Leaflet_chlorophyll_1-3
+Leaflet_chlorophyll_1-4
+Leaflet_chlorophyll_1-5
+Leaflet_chlorophyll_1-6
+Leaflet_chlorophyll_1-7
+Leaflet_chlorophyll_1-8
+Leaflet_chlorophyll_1-9
+Leaflet_chlorophyll_2-1
+Leaflet_chlorophyll_3-1
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+Shoot_weight,_fresh_1-1
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+Southern_root-knot_nematode_1-1
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\ No newline at end of file