Fixed a few gene names and missing symbols

svn path=/; revision=1127

diff --git a/po-associations/po_anatomy_gene_oryza_poc.assoc b/po-associations/po_anatomy_gene_oryza_poc.assoc
index 2774cd4b3da5aaf1d33bff938fb340a84d6691ed..26e587e0091f728ee12f616ecebb86dbec9a50cc 100644 (file)
--- a/po-associations/po_anatomy_gene_oryza_poc.assoc
+++ b/po-associations/po_anatomy_gene_oryza_poc.assoc
@@ -1734,7 +1734,7 @@ RAP-DB    Os06g0110200    Os06g0110200            PO:0009089      DOI:10.1371/journal.pone.0026162        IE
 RAP-DB Os06g0115000    Os06g0115000            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Conserved hypothetical protein  expressed protein       gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
 RAP-DB Os06g0117200    Os06g0117200            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Hypothetical protein    Expressed gene  gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
 RAP-DB Os06g0124900    Os06g0124900            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Conserved hypothetical protein  expressed protein       gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
-RAP-DB Os06g0127500    Os06g0127500            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       MEG5    RNA recognition motif containing protein, putative, expressed   gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
+RAP-DB Os06g0127500    Os06g0127500            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Hypothetical conserved gene             gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
 RAP-DB Os06g0129700    Os06g0129700            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       NUDIX hydrolase domain containing protein       hydrolase, NUDIX family, domain containing protein, expressed   gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
 RAP-DB Os06g0133000    Os06g0133000            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Granule-bound starch synthase I, chloroplast precursor (EC 24121)       starch synthase, putative, expressed    gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
 RAP-DB Os06g0136000    Os06g0136000            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Hypersensitive-induced reaction protein 4       hypersensitive-induced response protein, putative, expressed    gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
@@ -2303,7 +2303,7 @@ RAP-DB    Os08g0277900    Os08g0277900            PO:0009089      DOI:10.1371/journal.pone.0026162        IE
 RAP-DB Os08g0287200    Os08g0287200            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Conserved hypothetical protein  Expressed gene  gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
 RAP-DB Os08g0290700    Os08g0290700            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       O-methyltransferase, family 2 domain containing protein O-methyltransferase, putative, expressed        gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
 RAP-DB Os08g0295500    Os08g0295500            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Expressed gene  transposon protein, putative, Ac/Ds sub-class   gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
-RAP-DB Os08g0296900    Os08g0296900            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Octicosapeptide/Phox/Bem1p domain containing protein    octicosapeptide/Phox/Bem1p, putative, expressed gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
+RAP-DB Os08g0296900    Os08g0296900            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Tetratricopeptide-like helical domain containing protein                gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
 RAP-DB Os08g0308800    Os08g0308800            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Hypothetical protein    Expressed gene  gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
 RAP-DB Os08g0311500    Os08g0311500            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Expressed gene  Expressed gene  gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
 RAP-DB Os08g0311900    Os08g0311900            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Expressed gene  Expressed gene  gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
@@ -2421,7 +2421,7 @@ RAP-DB    Os08g0555600    Os08g0555600            PO:0009089      DOI:10.1371/journal.pone.0026162        IE
 RAP-DB Os08g0556000    Os08g0556000            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       YT521-B-like protein family protein     ECT5, putative, expressed       gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
 RAP-DB Os08g0556200    Os08g0556200            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Dihydroneopterin aldolase       dihydroneopterin aldolase, putative, expressed  gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
 RAP-DB Os08g0556900    Os08g0556900            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Cysteine proteinase (EC 3422-)  vignain precursor, putative, expressed  gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
-RAP-DB Os08g0557000    Os08g0557000            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Protein-L-isoaspartate O-methyltransferase (EC 21177) (Protein- beta-aspartate methyltransferase) (PIMT) (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl protein carboxyl methyltransferase)   protein-L-isoaspartate O-methyltransferase, putative, expressed gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
+RAP-DB Os08g0557000    OsPIMT1         PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       L-isoaspartylmethyltransferase 1                gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
 RAP-DB Os08g0558100    Os08g0558100            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Calcium-binding EF-hand domain containing protein       EF hand family protein, putative, expressed     gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
 RAP-DB Os08g0558700    Os08g0558700            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       Conserved hypothetical protein  multiple myeloma tumor-associated protein 2, putative, expressed        gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
 RAP-DB Os08g0558900    Os08g0558900            PO:0009089      DOI:10.1371/journal.pone.0026162        IEP             A       F1F0-ATPase inhibitor protein   expressed protein       gene    taxon:39947     20121019        POC:Pankaj_Jaiswal              
@@ -14897,7 +14897,7 @@ RAP-DB  Os08g0151000    Os08g0151000            PO:0025281      DOI:10.1371/journal.pone.0026162        IE
 RAP-DB Os08g0151800    Os08g0151800            PO:0025281      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Pyridine nucleotide-disulphide oxidoreductase, class I family protein   monodehydroascorbate reductase, putative, expressed     gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0001015)|participates_in(PO:0007130) 
 RAP-DB Os08g0152500    Os08g0152500            PO:0025281      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Conserved hypothetical protein  expressed protein       gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0001015)|participates_in(PO:0007130) 
 RAP-DB Os08g0152700    Os08g0152700            PO:0025281      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Diacylglycerol kinase, catalytic region domain containing protein       diacylglycerol kinase, putative, expressed      gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0001015)|participates_in(PO:0007130) 
-RAP-DB Os08g0154900    Os08g0154900            PO:0025281      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Oxysterol-binding protein family protein        oxysterol-binding protein-related protein 6, putative, expressed        gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0001015)|participates_in(PO:0007130) 
+RAP-DB Os08g0154900    Os08g0154900            PO:0025281      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Pleckstrin homology-type domain containing protein              gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0001015)|participates_in(PO:0007130) 
 RAP-DB Os08g0155100    Os08g0155100            PO:0025281      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Major sperm protein domain containing protein   MSP domain containing protein, expressed        gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0001015)|participates_in(PO:0007130) 
 RAP-DB Os08g0156700    Os08g0156700            PO:0025281      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       VAP27   MSP domain containing protein, expressed        gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0001015)|participates_in(PO:0007130) 
 RAP-DB Os08g0156900    Os08g0156900            PO:0025281      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       DNA topoisomerase, type II family protein       OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed       gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0001015)|participates_in(PO:0007130) 
@@ -17639,7 +17639,7 @@ RAP-DB  Os06g0669600    Os06g0669600            PO:0009047      DOI:10.1371/journal.pone.0026162        IE
 RAP-DB Os06g0676900    Os06g0676900            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Non-protein coding transcript, uncharacterized transcript       Expressed gene  gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
 RAP-DB Os06g0677000    Os06g0677000            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Patatin family protein  PLA IIIA/PLP7, putative, expressed      gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
 RAP-DB Os06g0678800    Os06g0678800            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Cupredoxin domain containing protein    monocopper oxidase, putative, expressed gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
-RAP-DB Os06g0681300    Os06g0681300            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       PAK-box/P21-Rho-binding domain containing protein       RIC10, putative, expressed      gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
+RAP-DB Os06g0681300    Os06g0681300            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Hypothetical conserved gene             gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
 RAP-DB Os06g0681600    Os06g0681600            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Plant peroxidase family protein peroxidase precursor, putative, expressed       gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
 RAP-DB Os06g0681700    Os06g0681700            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Conserved hypothetical protein  solute carrier family 35 member F5, putative, expressed gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
 RAP-DB Os06g0683800    Os06g0683800            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Hypothetical protein    hypothetical protein    gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
@@ -17853,7 +17853,7 @@ RAP-DB  Os08g0237000    Os08g0237000            PO:0009047      DOI:10.1371/journal.pone.0026162        IE
 RAP-DB Os08g0238600    Os08g0238600            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Endo-1,3;1,4-beta-D-glucanase precursor (EC 321-)       Expressed gene  gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
 RAP-DB Os08g0239000    Os08g0239000            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Complex 1 LYR protein family protein    LYR motif containing protein, putative, expressed       gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
 RAP-DB Os08g0248100    Os08g0248100            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Protein kinase domain containing protein        receptor-like protein kinase 2 precursor, putative, expressed   gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
-RAP-DB Os08g0249100    Os08g0249100            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       UspA domain containing protein  ATP binding protein, putative, expressed        gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
+RAP-DB Os08g0249100    OsRLCK249               PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Receptor-like Cytoplasmic Kinase 249            gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
 RAP-DB Os08g0269500    Os08g0269500            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Conserved hypothetical protein  retrotransposon protein, putative, SINE subclass, expressed     gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
 RAP-DB Os08g0269600    Os08g0269600            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       EGF-like domain containing protein      retrotransposon protein, putative, SINE subclass, expressed     gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
 RAP-DB Os08g0276000    Os08g0276000            PO:0009047      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Nonaspanin (TM9SF) family protein       transmembrane 9 superfamily member, putative, expressed gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007010)|participates_in(PO:0007130) 
@@ -22541,7 +22541,7 @@ RAP-DB  Os06g0690600    Os06g0690600            PO:0009009      DOI:10.1371/journal.pone.0026162        IE
 RAP-DB Os06g0692500    Os06g0692500            PO:0009009      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Expressed gene  phytosulfokine receptor precursor, putative     gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007631)|participates_in(PO:0007042) 
 RAP-DB Os06g0692600    Os06g0692600            PO:0009009      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Protein kinase domain containing protein        phytosulfokine receptor precursor, putative, expressed  gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007631)|participates_in(PO:0007042) 
 RAP-DB Os06g0693500    Os06g0693500            PO:0009009      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Zn-finger, C2H2 type domain containing protein  ZOS6-08 - C2H2 zinc finger protein, expressed   gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007631)|participates_in(PO:0007042) 
-RAP-DB Os06g0695500    Os06g0695500            PO:0009009      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Peroxidase 16 precursor (EC 11117) (Atperox P16) (ATP22a)       peroxidase precursor, putative, expressed       gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007631)|participates_in(PO:0007042) 
+RAP-DB Os06g0695500    prx90           PO:0009009      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       class III peroxidase 90         gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007631)|participates_in(PO:0007042) 
 RAP-DB Os06g0696500    Os06g0696500            PO:0009009      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Xyloglucan endo-transglycosylase precursor      glycosyl hydrolases family 16, putative gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007631)|participates_in(PO:0007042) 
 RAP-DB Os06g0698900    Os06g0698900            PO:0009009      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Zn-finger, GATA type domain containing protein  GATA transcription factor 25, putative, expressed       gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007631)|participates_in(PO:0007042) 
 RAP-DB Os06g0700000    Os06g0700000            PO:0009009      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Proteinase inhibitor I9, subtilisin propeptide domain containing protein        OsSub52 - Putative Subtilisin homologue, expressed      gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007631)|participates_in(PO:0007042) 
@@ -26756,7 +26756,7 @@ RAP-DB  Os07g0623600    Os07g0623600            PO:0009030      DOI:10.1371/journal.pone.0026162        IE
 RAP-DB Os07g0680500    Os07g0680500            PO:0009030      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Helicase, C-terminal domain containing protein  helicase conserved C-terminal domain containing protein, expressed      gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007606)|participates_in(PO:0007130) 
 RAP-DB Os08g0115200    Os08g0115200            PO:0009030      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       IQ calmodulin-binding region domain containing protein  IQ calmodulin-binding motif domain containing protein, expressed        gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007606)|participates_in(PO:0007130) 
 RAP-DB Os08g0145600    Os08g0145600            PO:0009030      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Peptidase, trypsin-like serine and cysteine proteases domain containing protein expressed protein       gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007606)|participates_in(PO:0007130) 
-RAP-DB Os08g0148300    Os08g0148300            PO:0009030      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       CLAVATA1 receptor kinase( CLV1)-like protein    receptor-like protein kinase 5 precursor, putative, expressed   gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007606)|participates_in(PO:0007130) 
+RAP-DB Os08g0148300    Os08g0148300            PO:0009030      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Conserved hypothetical protein          gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007606)|participates_in(PO:0007130) 
 RAP-DB Os08g0157900    Os08g0157900            PO:0009030      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       No apical meristem (NAM) protein domain containing protein      no apical meristem protein, putative, expressed gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007606)|participates_in(PO:0007130) 
 RAP-DB Os08g0220400    Os08g0220400            PO:0009030      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Pectinesterase family protein   pectinesterase, putative, expressed     gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007606)|participates_in(PO:0007130) 
 RAP-DB Os08g0296600    Os08g0296600            PO:0009030      DOI:10.1371/journal.pone.0026162        IEP     isolated_from_germplasm(Nipponbare)     A       Disease resistance protein family protein       NBS-LRR disease resistance protein, putative, expressed gene    taxon:39947     20121019        POC:Pankaj_Jaiswal      participates_in(PO:0007606)|participates_in(PO:0007130)