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simple entities changed from RiceCyc to reactome
authornaithans <naithans@localhost>
Fri, 21 Dec 2012 22:51:11 +0000 (22:51 +0000)
committernaithans <naithans@localhost>
Fri, 21 Dec 2012 22:51:11 +0000 (22:51 +0000)
svn path=/; revision=420

plant_reactome/rice_reactome_curation/sushma/Curated GA biosynthesis/gibberellin biosynthesis III (early C-13 hydroxylation)curatedsn.rtpj [new file with mode: 0644] patch | blob

diff --git a/plant_reactome/rice_reactome_curation/sushma/Curated GA biosynthesis/gibberellin biosynthesis III (early C-13 hydroxylation)curatedsn.rtpj b/plant_reactome/rice_reactome_curation/sushma/Curated GA biosynthesis/gibberellin biosynthesis III (early C-13 hydroxylation)curatedsn.rtpj
new file mode 100644 (file)
index 0000000..aa49945
--- /dev/null
+++ b/plant_reactome/rice_reactome_curation/sushma/Curated GA biosynthesis/gibberellin biosynthesis III (early C-13 hydroxylation)curatedsn.rtpj
@@ -0,0 +1,2835 @@
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+        <attribute name="name" value="alpha-Ketoglutaric acid" />
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+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1128440" displayName="gibberellin 20 oxidase 2 (LOC_OS01G66100.1) [cytosol]" isShell="false" isDirty="true">
+        <attribute name="summation" class="Summation" referTo="-4" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="gibberellin 20 oxidase 2 (LOC_OS01G66100.1)" />
+        <attribute name="name" value="phys-ent-participant86708" />
+        <attribute name="DB_ID" value="1128440" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="definition" value="Compartment: cellular_component unknown" />
+        <attribute name="referenceEntity" class="ReferenceGeneProduct" referTo="1156072" />
+        <attribute name="_displayName" value="gibberellin 20 oxidase 2 (LOC_OS01G66100.1) [cytosol]" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1128069" displayName="gibberellin 2-beta-dioxygenase 7 (LOC_OS07G01340.1) [cytosol]" isShell="false" isDirty="true">
+        <attribute name="summation" class="Summation" referTo="-2" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="gibberellin 2-beta-dioxygenase 7 (LOC_OS07G01340.1)" />
+        <attribute name="name" value="phys-ent-participant86926" />
+        <attribute name="name" value="phys-ent-participant87283" />
+        <attribute name="name" value="phys-ent-participant86759" />
+        <attribute name="name" value="phys-ent-participant86787" />
+        <attribute name="name" value="phys-ent-participant86961" />
+        <attribute name="name" value="phys-ent-participant86722" />
+        <attribute name="name" value="phys-ent-participant86944" />
+        <attribute name="name" value="phys-ent-participant86805" />
+        <attribute name="name" value="phys-ent-participant86836" />
+        <attribute name="name" value="phys-ent-participant87297" />
+        <attribute name="name" value="phys-ent-participant86739" />
+        <attribute name="name" value="phys-ent-participant86819" />
+        <attribute name="name" value="phys-ent-participant86634" />
+        <attribute name="DB_ID" value="1128069" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="definition" value="Compartment: cellular_component unknown" />
+        <attribute name="referenceEntity" class="ReferenceGeneProduct" referTo="1157441" />
+        <attribute name="_displayName" value="gibberellin 2-beta-dioxygenase 7 (LOC_OS07G01340.1) [cytosol]" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1129162" displayName="gibberellin 3-beta-dioxygenase 2-2 (LOC_OS05G08540.1) [cytosol]" isShell="false" isDirty="true">
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="gibberellin 3-beta-dioxygenase 2-2 (LOC_OS05G08540.1)" />
+        <attribute name="name" value="phys-ent-participant82319" />
+        <attribute name="name" value="phys-ent-participant86672" />
+        <attribute name="DB_ID" value="1129162" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="definition" value="Compartment: cellular_component unknown" />
+        <attribute name="referenceEntity" class="ReferenceGeneProduct" referTo="1161209" />
+        <attribute name="_displayName" value="gibberellin 3-beta-dioxygenase 2-2 (LOC_OS05G08540.1) [cytosol]" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1126711" displayName="gibberellin 20 oxidase 1-B (LOC_OS07G07420.1) [cytosol]" isShell="false" isDirty="true">
+        <attribute name="summation" class="Summation" referTo="-4" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="gibberellin 20 oxidase 1-B (LOC_OS07G07420.1)" />
+        <attribute name="name" value="phys-ent-participant82301" />
+        <attribute name="name" value="phys-ent-participant86669" />
+        <attribute name="DB_ID" value="1126711" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="definition" value="Compartment: cellular_component unknown" />
+        <attribute name="referenceEntity" class="ReferenceGeneProduct" referTo="1157530" />
+        <attribute name="_displayName" value="gibberellin 20 oxidase 1-B (LOC_OS07G07420.1) [cytosol]" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1125723" displayName="gibberellin 20 oxidase 1 (LOC_OS03G63970.1) [cytosol]" isShell="false" isDirty="true">
+        <attribute name="summation" class="Summation" referTo="-4" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="gibberellin 20 oxidase 1 (LOC_OS03G63970.1)" />
+        <attribute name="name" value="phys-ent-participant86745" />
+        <attribute name="name" value="phys-ent-participant86685" />
+        <attribute name="DB_ID" value="1125723" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="definition" value="Compartment: cellular_component unknown" />
+        <attribute name="referenceEntity" class="ReferenceGeneProduct" referTo="1155258" />
+        <attribute name="_displayName" value="gibberellin 20 oxidase 1 (LOC_OS03G63970.1) [cytosol]" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1124924" displayName="gibberellin 20 oxidase 2 (LOC_OS05G34854.1) [cytosol]" isShell="false" isDirty="true">
+        <attribute name="summation" class="Summation" referTo="-4" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="gibberellin 20 oxidase 2 (LOC_OS05G34854.1)" />
+        <attribute name="name" value="phys-ent-participant82326" />
+        <attribute name="name" value="phys-ent-participant86675" />
+        <attribute name="DB_ID" value="1124924" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="definition" value="Compartment: cellular_component unknown" />
+        <attribute name="referenceEntity" class="ReferenceGeneProduct" referTo="1155769" />
+        <attribute name="_displayName" value="gibberellin 20 oxidase 2 (LOC_OS05G34854.1) [cytosol]" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1122541" displayName="oxidoreductase (LOC_OS01G09300.1) [cytosol]" isShell="false" isDirty="true">
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="oxidoreductase (LOC_OS01G09300.1)" />
+        <attribute name="name" value="phys-ent-participant86637" />
+        <attribute name="name" value="phys-ent-participant82294" />
+        <attribute name="name" value="phys-ent-participant86947" />
+        <attribute name="name" value="phys-ent-participant86964" />
+        <attribute name="name" value="phys-ent-participant86929" />
+        <attribute name="name" value="phys-ent-participant86742" />
+        <attribute name="name" value="phys-ent-participant87286" />
+        <attribute name="name" value="phys-ent-participant87300" />
+        <attribute name="name" value="phys-ent-participant86762" />
+        <attribute name="name" value="phys-ent-participant86725" />
+        <attribute name="name" value="phys-ent-participant86808" />
+        <attribute name="name" value="phys-ent-participant86822" />
+        <attribute name="name" value="phys-ent-participant86790" />
+        <attribute name="name" value="phys-ent-participant86839" />
+        <attribute name="DB_ID" value="1122541" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="definition" value="Compartment: cellular_component unknown" />
+        <attribute name="referenceEntity" class="ReferenceGeneProduct" referTo="1159425" />
+        <attribute name="_displayName" value="oxidoreductase (LOC_OS01G09300.1) [cytosol]" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+    </EntityWithAccessionedSequence>
+    <Taxon>
+      <instance DB_ID="186856" displayName="Oryza" isShell="true" />
+    </Taxon>
+    <DatabaseIdentifier>
+      <instance DB_ID="186858" displayName="NCBI_taxonomy:4530" isShell="true" />
+      <instance DB_ID="71828" displayName="EC:1.14.11.-" isShell="false" isDirty="false">
+        <attribute name="DB_ID" value="71828" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="4" />
+        <attribute name="_Protege_id" value="metabolic_pathways_CSHL_02778" />
+        <attribute name="identifier" value="1.14.11.-" />
+        <attribute name="_displayName" value="EC:1.14.11.-" />
+      </instance>
+      <instance DB_ID="1142804" displayName="RiceCyc:RXN-6524" isShell="false" isDirty="false">
+        <attribute name="DB_ID" value="1142804" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="1118109" />
+        <attribute name="identifier" value="RXN-6524" />
+        <attribute name="_displayName" value="RiceCyc:RXN-6524" />
+      </instance>
+      <instance DB_ID="1154399" displayName="EC-NUMBER:1.14.11.12" isShell="false" isDirty="false">
+        <attribute name="DB_ID" value="1154399" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="4" />
+        <attribute name="identifier" value="1.14.11.12" />
+        <attribute name="_displayName" value="EC-NUMBER:1.14.11.12" />
+      </instance>
+      <instance DB_ID="1135091" displayName="RiceCyc:RXN1F-143" isShell="false" isDirty="false">
+        <attribute name="DB_ID" value="1135091" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="1118109" />
+        <attribute name="identifier" value="RXN1F-143" />
+        <attribute name="_displayName" value="RiceCyc:RXN1F-143" />
+      </instance>
+      <instance DB_ID="1136341" displayName="RiceCyc:RXN1F-101" isShell="false" isDirty="false">
+        <attribute name="DB_ID" value="1136341" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="1118109" />
+        <attribute name="identifier" value="RXN1F-101" />
+        <attribute name="_displayName" value="RiceCyc:RXN1F-101" />
+      </instance>
+      <instance DB_ID="1146765" displayName="RiceCyc:RXN1F-169" isShell="false" isDirty="false">
+        <attribute name="DB_ID" value="1146765" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="1118109" />
+        <attribute name="identifier" value="RXN1F-169" />
+        <attribute name="_displayName" value="RiceCyc:RXN1F-169" />
+      </instance>
+      <instance DB_ID="1151520" displayName="RiceCyc:RXN1F-170" isShell="false" isDirty="false">
+        <attribute name="DB_ID" value="1151520" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="1118109" />
+        <attribute name="identifier" value="RXN1F-170" />
+        <attribute name="_displayName" value="RiceCyc:RXN1F-170" />
+      </instance>
+      <instance DB_ID="1152617" displayName="RiceCyc:RXN1F-167" isShell="false" isDirty="false">
+        <attribute name="DB_ID" value="1152617" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="1118109" />
+        <attribute name="identifier" value="RXN1F-167" />
+        <attribute name="_displayName" value="RiceCyc:RXN1F-167" />
+      </instance>
+      <instance DB_ID="26646" displayName="EC:1.14.11.15" isShell="false" isDirty="false">
+        <attribute name="DB_ID" value="26646" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="4" />
+        <attribute name="identifier" value="1.14.11.15" />
+        <attribute name="_displayName" value="EC:1.14.11.15" />
+      </instance>
+      <instance DB_ID="1140233" displayName="RiceCyc:RXN1F-168" isShell="false" isDirty="false">
+        <attribute name="DB_ID" value="1140233" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="1118109" />
+        <attribute name="identifier" value="RXN1F-168" />
+        <attribute name="_displayName" value="RiceCyc:RXN1F-168" />
+      </instance>
+      <instance DB_ID="1139424" displayName="RiceCyc:PWY-5035" isShell="false" isDirty="false">
+        <attribute name="DB_ID" value="1139424" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="1118109" />
+        <attribute name="identifier" value="PWY-5035" />
+        <attribute name="_displayName" value="RiceCyc:PWY-5035" />
+      </instance>
+      <instance DB_ID="1137987" displayName="UniProtKB:Q94ID4" isShell="true" />
+      <instance DB_ID="1140651" displayName="UniProtKB:Q94IE4" isShell="true" />
+      <instance DB_ID="1140040" displayName="UniProtKB:Q0JQ78" isShell="true" />
+      <instance DB_ID="1141577" displayName="UniProtKB:A2WLB3" isShell="true" />
+      <instance DB_ID="1140951" displayName="UniProtKB:Q9FU53" isShell="true" />
+      <instance DB_ID="1153669" displayName="UniProtKB:Q8RVF5" isShell="true" />
+      <instance DB_ID="1151742" displayName="UniProtKB:Q8S492" isShell="true" />
+      <instance DB_ID="1149577" displayName="UniProtKB:B5UA56" isShell="true" />
+      <instance DB_ID="1152993" displayName="UniProtKB:P0C5H5" isShell="true" />
+      <instance DB_ID="1143785" displayName="UniProtKB:Q0JH50" isShell="true" />
+      <instance DB_ID="1144503" displayName="UniProtKB:B6F2D7" isShell="true" />
+      <instance DB_ID="1152442" displayName="UniProtKB:Q2Z294" isShell="true" />
+      <instance DB_ID="1145099" displayName="UniProtKB:B6F2D9" isShell="true" />
+      <instance DB_ID="1141061" displayName="UniProtKB:Q10AC7" isShell="true" />
+      <instance DB_ID="1133631" displayName="UniProtKB:A2XP95" isShell="true" />
+      <instance DB_ID="1137163" displayName="UniProtKB:A2XP93" isShell="true" />
+      <instance DB_ID="1134944" displayName="UniProtKB:A3APX7" isShell="true" />
+      <instance DB_ID="1132875" displayName="UniProtKB:P93771" isShell="true" />
+      <instance DB_ID="1145592" displayName="UniProtKB:Q6AT12" isShell="true" />
+      <instance DB_ID="1152874" displayName="UniProtKB:B9FI00" isShell="true" />
+      <instance DB_ID="1152269" displayName="UniProtKB:B8AYM7" isShell="true" />
+      <instance DB_ID="1143740" displayName="UniProtKB:Q94IE3" isShell="true" />
+      <instance DB_ID="1136939" displayName="UniProtKB:B9FIP9" isShell="true" />
+      <instance DB_ID="1136267" displayName="UniProtKB:Q6L4Y3" isShell="true" />
+      <instance DB_ID="1147134" displayName="UniProtKB:A2YHB5" isShell="true" />
+      <instance DB_ID="1139522" displayName="UniProtKB:Q8LGZ9" isShell="true" />
+      <instance DB_ID="1147209" displayName="UniProtKB:Q69LD8" isShell="true" />
+      <instance DB_ID="1146586" displayName="UniProtKB:A2ZKN2" isShell="true" />
+      <instance DB_ID="29357" displayName="COMPOUND:C00001" isShell="true" />
+      <instance DB_ID="29369" displayName="COMPOUND:C00007" isShell="true" />
+      <instance DB_ID="29377" displayName="COMPOUND:C00011" isShell="true" />
+      <instance DB_ID="29435" displayName="COMPOUND:C00042" isShell="true" />
+      <instance DB_ID="29407" displayName="COMPOUND:C00026" isShell="true" />
+      <instance DB_ID="183735" displayName="PubChem Substance:8145356" isShell="true" />
+    </DatabaseIdentifier>
+    <PathwayDiagram>
+      <instance DB_ID="-13" displayName="Diagram of gibberellin biosynthesis III (early C-13 hydroxylation)" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="-13" />
+        <attribute name="representedPathway" class="Pathway" referTo="1119294" />
+        <attribute name="_displayName" value="Diagram of gibberellin biosynthesis III (early C-13 hydroxylation)" />
+      </instance>
+    </PathwayDiagram>
+    <StableIdentifier>
+      <instance DB_ID="368847" displayName="REACT_3683.1" isShell="true" />
+      <instance DB_ID="371928" displayName="REACT_5251.1" isShell="true" />
+      <instance DB_ID="370989" displayName="REACT_2373.1" isShell="true" />
+      <instance DB_ID="363677" displayName="REACT_5838.1" isShell="true" />
+      <instance DB_ID="367220" displayName="REACT_5182.1" isShell="true" />
+    </StableIdentifier>
+    <ReferenceGeneProduct>
+      <instance DB_ID="1159425" displayName="UniProt:Q5SND7 LOC_OS01G09300" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="1159425" />
+        <attribute name="species" class="Species" referTo="-1" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="2" />
+        <attribute name="keyword" value="Complete proteome" />
+        <attribute name="keyword" value="Iron" />
+        <attribute name="keyword" value="Oxidoreductase" />
+        <attribute name="_displayName" value="UniProt:Q5SND7 LOC_OS01G09300" />
+        <attribute name="secondaryIdentifier" value="Q5SND7_ORYSJ" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="geneName" value="LOC_OS01G09300" />
+        <attribute name="geneName" value="P0512G09.18" />
+        <attribute name="geneName" value="P0695A04.27" />
+        <attribute name="name" value="oxidoreductase, putative, expressed//oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors//isopenicillin-N synthase//gibberellin 20-oxidase" />
+        <attribute name="name" value="protein82292" />
+        <attribute name="identifier" value="Q5SND7" />
+      </instance>
+      <instance DB_ID="1155769" displayName="UniProt:Q6L4Y3 LOC_OS05G34854" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="1155769" />
+        <attribute name="species" class="Species" referTo="-1" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="2" />
+        <attribute name="keyword" value="Complete proteome" />
+        <attribute name="keyword" value="Iron" />
+        <attribute name="keyword" value="Oxidoreductase" />
+        <attribute name="_displayName" value="UniProt:Q6L4Y3 LOC_OS05G34854" />
+        <attribute name="secondaryIdentifier" value="Q6L4Y3_ORYSJ" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="geneName" value="LOC_OS05G34854" />
+        <attribute name="geneName" value="OSJNBb0092E21.11" />
+        <attribute name="name" value="gibberellin 20 oxidase 2, putative, expressed//proteolysis//gibberellin metabolic process//iron ion binding//metallocarboxypeptidase activity//oxidoreductase activity//antibiotic biosynthetic process//gibberellin 20-oxidase" />
+        <attribute name="name" value="protein82322" />
+        <attribute name="identifier" value="Q6L4Y3" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1136939" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1136267" />
+      </instance>
+      <instance DB_ID="1157530" displayName="UniProt:Q69LD8 LOC_OS07G07420" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="1157530" />
+        <attribute name="species" class="Species" referTo="-1" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="2" />
+        <attribute name="keyword" value="Complete proteome" />
+        <attribute name="keyword" value="Dioxygenase" />
+        <attribute name="keyword" value="Iron" />
+        <attribute name="keyword" value="Oxidoreductase" />
+        <attribute name="_displayName" value="UniProt:Q69LD8 LOC_OS07G07420" />
+        <attribute name="secondaryIdentifier" value="Q69LD8_ORYSJ" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="geneName" value="LOC_OS07G07420" />
+        <attribute name="geneName" value="OSJNBa0050F10.19" />
+        <attribute name="geneName" value="Os07g0169700" />
+        <attribute name="name" value="gibberellin 20 oxidase 1-B, putative, expressed//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen//gibberellin metabolic process//iron ion binding//oxidoreductase activity//antibiotic biosynthetic process//gibberellin 20-oxidase" />
+        <attribute name="name" value="protein82297" />
+        <attribute name="identifier" value="Q69LD8" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1147209" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1146586" />
+      </instance>
+      <instance DB_ID="1157441" displayName="UniProt:Q8LGZ9 LOC_OS07G01340" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="1157441" />
+        <attribute name="species" class="Species" referTo="-1" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="2" />
+        <attribute name="keyword" value="Complete proteome" />
+        <attribute name="keyword" value="Iron" />
+        <attribute name="keyword" value="Oxidoreductase" />
+        <attribute name="_displayName" value="UniProt:Q8LGZ9 LOC_OS07G01340" />
+        <attribute name="secondaryIdentifier" value="Q8LGZ9_ORYSJ" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="geneName" value="LOC_OS07G01340" />
+        <attribute name="geneName" value="P0446F04.116" />
+        <attribute name="geneName" value="Os07g0103500" />
+        <attribute name="name" value="gibberellin 2-beta-dioxygenase 7, putative, expressed" />
+        <attribute name="name" value="protein86630" />
+        <attribute name="identifier" value="Q8LGZ9" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1147134" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1139522" />
+      </instance>
+      <instance DB_ID="1156072" displayName="UniProt:QOJH50 LOC_Os01g66100" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="1156072" />
+        <attribute name="species" class="Species" referTo="-1" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="2" />
+        <attribute name="keyword" value="Complete proteome" />
+        <attribute name="keyword" value="Iron" />
+        <attribute name="keyword" value="Metal-binding" />
+        <attribute name="keyword" value="Oxidoreductase" />
+        <attribute name="keyword" value="Polymorphism" />
+        <attribute name="_displayName" value="UniProt:QOJH50 LOC_Os01g66100" />
+        <attribute name="secondaryIdentifier" value="GAOX2_ORYSJ" />
+        <attribute name="secondaryIdentifier" value="Q0JH50" />
+        <attribute name="secondaryIdentifier" value="Q6YLX3" />
+        <attribute name="secondaryIdentifier" value="Q7EC22" />
+        <attribute name="secondaryIdentifier" value="Q7GBH4" />
+        <attribute name="secondaryIdentifier" value="Q8RVF5" />
+        <attribute name="secondaryIdentifier" value="Q8S492" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="geneName" value="LOC_Os01g66100" />
+        <attribute name="geneName" value="20ox2" />
+        <attribute name="geneName" value="C20ox2" />
+        <attribute name="geneName" value="GA20" />
+        <attribute name="geneName" value="Sd-1" />
+        <attribute name="geneName" value="Os01g0883800" />
+        <attribute name="geneName" value="B1065E10.46" />
+        <attribute name="name" value="gibberellin 20 oxidase 2, putative, expressed//unidimensional cell growth//gibberellin metabolic process//gibberellin 20-oxidase activity//response to abiotic stimulus//gibberellin biosynthetic process//gibberellin 20-oxidase" />
+        <attribute name="name" value="protein86698" />
+        <attribute name="comment" value="FUNCTION: Key oxidase enzyme in the biosynthesis of gibberellin that catalyzes the conversion of GA53 to GA20 via a three-step oxidation at C-20 of the GA skeleton." />
+        <attribute name="comment" value="COFACTOR: Iron." />
+        <attribute name="comment" value="COFACTOR: Ascorbate." />
+        <attribute name="comment" value="COFACTOR: 2-oxoglutarate." />
+        <attribute name="comment" value="TISSUE SPECIFICITY: Strongly expressed in leaf blades, stems and unopened flowers. Lower expression in leaf sheath, rachis, shoot apex and roots." />
+        <attribute name="comment" value="DEVELOPMENTAL STAGE: Expressed within 48 hours after sowing, as well as in 10-day-old plants and flowering panicles." />
+        <attribute name="comment" value="POLYMORPHISM: Sd-1 is the major semidwarfing allele extensively used in modern rice cultivars." />
+        <attribute name="comment" value="BIOTECHNOLOGY: This gene, also known as the 'green revolution gene' has been introduced by conventional breeding procedures into several cultivars. It provides rice cultivars with short, thick culms, raises the harvest index, improves lodging resistance and responsiveness to nitrogen fertilizer, resulting high yields without affecting panicle and grain quality." />
+        <attribute name="comment" value="MISCELLANEOUS: A second gene, 20ox1, is preferentially expressed in the reproductive organs and enables the flowers in sd1 plants to develop and be fertilized normally." />
+        <attribute name="comment" value="SIMILARITY: Belongs to the iron/ascorbate-dependent oxidoreductase family. GA20OX subfamily." />
+        <attribute name="identifier" value="QOJH50" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1153669" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1151742" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1149577" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1152993" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1143785" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1144503" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1152442" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1145099" />
+      </instance>
+      <instance DB_ID="1155258" displayName="UniProt:P93771 LOC_Os03g63970" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="1155258" />
+        <attribute name="species" class="Species" referTo="-1" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="2" />
+        <attribute name="keyword" value="Complete proteome" />
+        <attribute name="keyword" value="Iron" />
+        <attribute name="keyword" value="Metal-binding" />
+        <attribute name="keyword" value="Oxidoreductase" />
+        <attribute name="_displayName" value="UniProt:P93771 LOC_Os03g63970" />
+        <attribute name="secondaryIdentifier" value="GAOX1_ORYSJ" />
+        <attribute name="secondaryIdentifier" value="Q84M83" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="geneName" value="LOC_Os03g63970" />
+        <attribute name="geneName" value="20ox1" />
+        <attribute name="geneName" value="GA20ox-1" />
+        <attribute name="geneName" value="Os03g0856700" />
+        <attribute name="geneName" value="OSJNBa0059G06.22" />
+        <attribute name="name" value="gibberellin 20 oxidase 1, putative, expressed//gibberellin metabolic process//gibberellin 20-oxidase" />
+        <attribute name="name" value="protein86678" />
+        <attribute name="comment" value="FUNCTION: Key oxidase enzyme in the biosynthesis of gibberellin that catalyzes the conversion of GA12 and GA53 to GA9 and GA20 respectively, via a three-step oxidation at C-20 of the GA skeleton." />
+        <attribute name="comment" value="COFACTOR: Iron." />
+        <attribute name="comment" value="COFACTOR: Ascorbate." />
+        <attribute name="comment" value="COFACTOR: 2-oxoglutarate." />
+        <attribute name="comment" value="TISSUE SPECIFICITY: Preferentially expressed in reproductive organs." />
+        <attribute name="comment" value="INDUCTION: Negatively controlled by the level of physiologically active gibberellin." />
+        <attribute name="comment" value="SIMILARITY: Belongs to the iron/ascorbate-dependent oxidoreductase family. GA20OX subfamily." />
+        <attribute name="comment" value="SIMILARITY: Contains 1 Fe2OG dioxygenase domain." />
+        <attribute name="identifier" value="P93771" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1141061" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1133631" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1137163" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1134944" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1132875" />
+      </instance>
+      <instance DB_ID="1160677" displayName="UniProt:Q9FU53 LOC_OS01G08220.1" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="1160677" />
+        <attribute name="species" class="Species" referTo="-1" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="2" />
+        <attribute name="keyword" value="Complete proteome" />
+        <attribute name="keyword" value="Iron" />
+        <attribute name="keyword" value="Oxidoreductase" />
+        <attribute name="_displayName" value="UniProt:Q9FU53 LOC_OS01G08220.1" />
+        <attribute name="secondaryIdentifier" value="Q9FU53_ORYSJ" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="geneName" value="LOC_OS01G08220.1" />
+        <attribute name="geneName" value="P0013F10.29" />
+        <attribute name="geneName" value="D18" />
+        <attribute name="geneName" value="OsJ_00594" />
+        <attribute name="name" value="gibberellin 3-beta-dioxygenase 2-2, putative, expressed//gibberellin metabolic process//gibberellin 3-beta-dioxygenase" />
+        <attribute name="name" value="protein86688" />
+        <attribute name="identifier" value="Q9FU53" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1137987" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1140651" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1140040" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1141577" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1140951" />
+      </instance>
+      <instance DB_ID="1161209" displayName="UniProt:Q6AT12 LOC_OS05G08540" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="1161209" />
+        <attribute name="species" class="Species" referTo="-1" />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="2" />
+        <attribute name="keyword" value="Complete proteome" />
+        <attribute name="keyword" value="Iron" />
+        <attribute name="keyword" value="Oxidoreductase" />
+        <attribute name="_displayName" value="UniProt:Q6AT12 LOC_OS05G08540" />
+        <attribute name="secondaryIdentifier" value="Q6AT12_ORYSJ" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="geneName" value="LOC_OS05G08540" />
+        <attribute name="geneName" value="OSJNBa0029B02.17" />
+        <attribute name="geneName" value="Os05g0178100" />
+        <attribute name="name" value="gibberellin 3-beta-dioxygenase 2-2, putative, expressed//gibberellin metabolic process//iron ion binding//antibiotic biosynthetic process//gibberellin 3-beta-dioxygenase" />
+        <attribute name="name" value="protein82313" />
+        <attribute name="identifier" value="Q6AT12" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1145592" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1152874" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1152269" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1143740" />
+      </instance>
+    </ReferenceGeneProduct>
+    <DefinedSet>
+      <instance DB_ID="1121727" displayName="gibberellin 20-oxidase [cytosol]" isShell="false" isDirty="true">
+        <attribute name="summation" class="Summation" referTo="-4" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="gibberellin 20-oxidase" />
+        <attribute name="name" value="phys-ent-participant86637" />
+        <attribute name="DB_ID" value="1121727" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="_displayName" value="gibberellin 20-oxidase [cytosol]" />
+        <attribute name="hasMember" class="EntityWithAccessionedSequence" referTo="1128069" />
+        <attribute name="hasMember" class="EntityWithAccessionedSequence" referTo="1122541" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1121717" displayName="gibberellin 20 oxidase 1  [cytosol]" isShell="false" isDirty="true">
+        <attribute name="summation" class="Summation" referTo="-4" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="gibberellin 20 oxidase 1 " />
+        <attribute name="name" value="phys-ent-participant82319" />
+        <attribute name="name" value="phys-ent-participant82326" />
+        <attribute name="name" value="gibberellin 20 oxidase 2 (LOC_OS01G66100.1)" />
+        <attribute name="name" value="gibberellin 20 oxidase 1-B (LOC_OS07G07420.1)" />
+        <attribute name="name" value="gibberellin 3-beta-dioxygenase 2-2 (LOC_OS01G08220.1)" />
+        <attribute name="DB_ID" value="1121717" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="_displayName" value="gibberellin 20 oxidase 1  [cytosol]" />
+        <attribute name="hasMember" class="EntityWithAccessionedSequence" referTo="1129162" />
+        <attribute name="hasMember" class="EntityWithAccessionedSequence" referTo="1128440" />
+        <attribute name="hasMember" class="EntityWithAccessionedSequence" referTo="1128079" />
+        <attribute name="hasMember" class="EntityWithAccessionedSequence" referTo="1126711" />
+        <attribute name="hasMember" class="EntityWithAccessionedSequence" referTo="1125723" />
+        <attribute name="hasMember" class="EntityWithAccessionedSequence" referTo="1124924" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1122045" displayName="gibberellin 20 oxidase 1  [cytosol]" isShell="false" isDirty="true">
+        <attribute name="summation" class="Summation" referTo="-4" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="gibberellin 20 oxidase 1 " />
+        <attribute name="name" value="phys-ent-participant86637" />
+        <attribute name="name" value="gibberellin 2-beta-dioxygenase 7 (LOC_OS07G01340.1, LOC_OS03G63970.1, LOC_OS01G09300.1)" />
+        <attribute name="DB_ID" value="1122045" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="_displayName" value="gibberellin 20 oxidase 1  [cytosol]" />
+        <attribute name="hasMember" class="EntityWithAccessionedSequence" referTo="1128069" />
+        <attribute name="hasMember" class="EntityWithAccessionedSequence" referTo="1125723" />
+        <attribute name="hasMember" class="EntityWithAccessionedSequence" referTo="1122541" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+    </DefinedSet>
+    <Summation>
+      <instance DB_ID="1119236" displayName="Data source: RiceCyc" isShell="false" isDirty="false">
+        <attribute name="DB_ID" value="1119236" />
+        <attribute name="text" value="Data source: RiceCyc" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="_displayName" value="Data source: RiceCyc" />
+        <attribute name="modified" class="InstanceEdit" referTo="1169158" />
+        <attribute name="modified" class="InstanceEdit" referTo="1169175" />
+      </instance>
+      <instance DB_ID="-2" displayName="gibberellin 2-beta-dioxygenase 7, putative, expressed" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="-2" />
+        <attribute name="text" value="gibberellin 2-beta-dioxygenase 7, putative, expressed" />
+        <attribute name="_displayName" value="gibberellin 2-beta-dioxygenase 7, putative, expressed" />
+      </instance>
+      <instance DB_ID="-3" displayName="" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="-3" />
+      </instance>
+      <instance DB_ID="-4" displayName="The deduced protein sequence suggests that the enzyme family..." isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="-4" />
+        <attribute name="text" value="The deduced protein sequence suggests that the enzyme family GA20ox catalyzes the conversion of GA53 to GA20, thus taking part in the Gibberellic acid biosynthesis pathway. There is no phenotype associated with it, however this bears a very strong homology with the well known rice green revolution gene semidwarf-1 (sd1)." />
+        <attribute name="_displayName" value="The deduced protein sequence suggests that the enzyme family..." />
+      </instance>
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+        <attribute name="_displayName" value="GA12 is oxidized into GA53." />
+      </instance>
+      <instance DB_ID="-6" displayName="GA19 is converted into GA17" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="-6" />
+        <attribute name="text" value="GA19 is converted into GA17" />
+        <attribute name="_displayName" value="GA19 is converted into GA17" />
+      </instance>
+      <instance DB_ID="-7" displayName="GA19 is converted into GA20 by an oxidase." isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="-7" />
+        <attribute name="text" value="GA19 is converted into GA20 by an oxidase." />
+        <attribute name="_displayName" value="GA19 is converted into GA20 by an oxidase." />
+      </instance>
+      <instance DB_ID="-8" displayName="GA20 is converted into GA1 ()" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="-8" />
+        <attribute name="text" value="GA20 is converted into GA1 ()" />
+        <attribute name="_displayName" value="GA20 is converted into GA1 ()" />
+      </instance>
+      <instance DB_ID="-9" displayName="GA44 is converted into GA19 by an oxidase." isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="-9" />
+        <attribute name="text" value="GA44 is converted into GA19 by an oxidase." />
+        <attribute name="_displayName" value="GA44 is converted into GA19 by an oxidase." />
+      </instance>
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+        <attribute name="DB_ID" value="-10" />
+        <attribute name="text" value="GA44 is converted into GA38." />
+        <attribute name="_displayName" value="GA44 is converted into GA38." />
+      </instance>
+      <instance DB_ID="-11" displayName="GA53 is converted into GA44 by an oxidase." isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="-11" />
+        <attribute name="text" value="GA53 is converted into GA44 by an oxidase." />
+        <attribute name="_displayName" value="GA53 is converted into GA44 by an oxidase." />
+      </instance>
+      <instance DB_ID="-16" displayName="Pathway was curated by Gramene." isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="-16" />
+        <attribute name="text" value="Pathway was curated by Gramene." />
+        <attribute name="_displayName" value="Pathway was curated by Gramene." />
+      </instance>
+    </Summation>
+    <GO_MolecularFunction>
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+        <attribute name="DB_ID" value="23587" />
+        <attribute name="definition" value="Catalysis of the reaction: a gibberellin + 2-oxoglutarate + O2 = a 2-beta-hydroxygibberellin + succinate + CO2." />
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+      <instance DB_ID="159977" displayName="dioxygenase activity" isShell="true" />
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+      <instance DB_ID="615500" displayName="Kanapin, AA" isShell="true" />
+      <instance DB_ID="1301009" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1173252" displayName="D'Eustachio, P, 2011-01-21" isShell="true" />
+      <instance DB_ID="1173233" displayName="D'Eustachio, P, 2011-01-21" isShell="true" />
+      <instance DB_ID="258122" displayName="Kanapin, EE, 2008-03-27 12:15:20" isShell="true" />
+      <instance DB_ID="1552540" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="383393" displayName="Kanapin, AA, 2008-11-26 13:49:44" isShell="true" />
+      <instance DB_ID="2455542" displayName="Weiser, JD" isShell="true" />
+      <instance DB_ID="160533" displayName="Schmidt, EE, 2005-03-23 05:24:35" isShell="true" />
+      <instance DB_ID="2266118" displayName="Weiser, JD" isShell="true" />
+      <instance DB_ID="396309" displayName="Kanapin, EE, 2009-03-09 13:26:57" isShell="true" />
+      <instance DB_ID="937668" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1169158" displayName="D'Eustachio, P, 2011-01-12" isShell="true" />
+      <instance DB_ID="2266147" displayName="Weiser, JD" isShell="true" />
+      <instance DB_ID="386933" displayName="Mahajan, SS, 2008-11-27 13:16:57" isShell="true" />
+      <instance DB_ID="376438" displayName="Kanapin, EE, 2008-09-08 10:23:04" isShell="true" />
+      <instance DB_ID="797782" displayName="Kanapin, AA" isShell="true" />
+      <instance DB_ID="1164949" displayName="Wu, G, 2010-12-10" isShell="false" isDirty="false">
+        <attribute name="author" class="Person" referTo="1112777" />
+        <attribute name="DB_ID" value="1164949" />
+        <attribute name="dateTime" value="2010-12-10 23:21:41.0" />
+        <attribute name="_displayName" value="Wu, G, 2010-12-10" />
+      </instance>
+      <instance DB_ID="422569" displayName="Kanapin, EE" isShell="true" />
+      <instance DB_ID="447572" displayName="Kanapin, EE" isShell="true" />
+      <instance DB_ID="1301023" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1220942" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="526073" displayName="Kanapin, AA" isShell="true" />
+      <instance DB_ID="1996004" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="186845" displayName="D'Eustachio, P, 2006-08-28 17:20:12" isShell="true" />
+      <instance DB_ID="171322" displayName="Schmidt, EE, 2006-02-06 10:50:16" isShell="true" />
+      <instance DB_ID="1169175" displayName="D'Eustachio, P, 2011-01-12" isShell="true" />
+      <instance DB_ID="162607" displayName="Schmidt, EE, 2005-04-01 11:06:09" isShell="true" />
+      <instance DB_ID="2454362" displayName="Weiser, JD" isShell="true" />
+      <instance DB_ID="2132408" displayName="Weiser, JD" isShell="true" />
+      <instance DB_ID="357819" displayName="Kanapin, EE, 2008-06-18 10:45:39" isShell="true" />
+      <instance DB_ID="1042299" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2395859" displayName="Jassal, B, 2012-07-03" isShell="true" />
+      <instance DB_ID="436347" displayName="Kanapin, EE" isShell="true" />
+      <instance DB_ID="162334" displayName="Schmidt, EE, 2005-03-23 05:45:22" isShell="true" />
+      <instance DB_ID="423222" displayName="Kanapin, AA" isShell="true" />
+      <instance DB_ID="448165" displayName="Kanapin, AA" isShell="true" />
+      <instance DB_ID="938674" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1043152" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1221553" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1301626" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1552982" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="1996190" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2133759" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2133760" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2133761" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2266115" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2266117" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2267216" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2455544" displayName="Yung, CK" isShell="true" />
+      <instance DB_ID="2186796" displayName="Wu, G, 2012-04-06" isShell="true" />
+      <instance DB_ID="-15" displayName="Naithani, Sushma, 2012-12-12" isShell="false" isDirty="true">
+        <attribute name="author" class="Person" referTo="-14" />
+        <attribute name="DB_ID" value="-15" />
+        <attribute name="dateTime" value="20121212221646" />
+        <attribute name="_displayName" value="Naithani, Sushma, 2012-12-12" />
+      </instance>
+      <instance DB_ID="113517" displayName="Schmidt, EE, 2004-06-09 05:19:12" isShell="true" />
+      <instance DB_ID="2581471" displayName="Jassal, B, 2012-11-13" isShell="true" />
+      <instance DB_ID="2586593" displayName="D'Eustachio, P, 2012-11-16" isShell="true" />
+      <instance DB_ID="76326" displayName="Jassal, B, 2003-08-05 00:00:00" isShell="true" />
+      <instance DB_ID="1816721" displayName="Jupe, S, 2011-10-25" isShell="true" />
+      <instance DB_ID="2672094" displayName="D'Eustachio, P, 2012-11-26" isShell="true" />
+      <instance DB_ID="2537470" displayName="Wu, G, 2012-10-26" isShell="true" />
+      <instance DB_ID="141749" displayName="Joshi-Tope, G, 2004-10-03 23:20:38" isShell="true" />
+      <instance DB_ID="183151" displayName="de Bono, B, 2006-07-24 05:14:51" isShell="true" />
+      <instance DB_ID="183161" displayName="de Bono, B, 2006-07-24 10:30:22" isShell="true" />
+      <instance DB_ID="561081" displayName="Jassal, B, 2010-03-25" isShell="true" />
+      <instance DB_ID="1650793" displayName="Jupe, S, 2011-10-12" isShell="true" />
+      <instance DB_ID="1655892" displayName="Jassal, B, 2011-10-13" isShell="true" />
+      <instance DB_ID="1793191" displayName="Jassal, B, 2011-10-21" isShell="true" />
+    </InstanceEdit>
+    <Person>
+      <instance DB_ID="1112777" displayName="Wu, G" isShell="true" />
+      <instance DB_ID="-14" displayName="Naithani, Sushma" isShell="false" isDirty="true">
+        <attribute name="DB_ID" value="-14" />
+        <attribute name="surname" value="Naithani" />
+        <attribute name="firstname" value="Sushma" />
+        <attribute name="_displayName" value="Naithani, Sushma" />
+        <attribute name="initial" value="SN" />
+        <attribute name="affiliation" class="Affiliation" referTo="2186798" />
+      </instance>
+    </Person>
+    <Reaction>
+      <instance DB_ID="1120398" displayName="GA19+O2+alpha-ketoglutarate-&gt;GA17+succinate+CO2" isShell="false" isDirty="true">
+        <attribute name="catalystActivity" class="CatalystActivity" referTo="1118600" />
+        <attribute name="summation" class="Summation" referTo="-6" />
+        <attribute name="_doRelease" value="false" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="GA19+O2+alpha-ketoglutarate-&gt;GA17+succinate+CO2" />
+        <attribute name="name" value="RXN1F-101" />
+        <attribute name="name" value="biochemicalReaction86823" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1136341" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="71828" />
+        <attribute name="DB_ID" value="1120398" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1120898" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1120898" />
+        <attribute name="_displayName" value="GA19+O2+alpha-ketoglutarate-&gt;GA17+succinate+CO2" />
+        <attribute name="input" class="SimpleEntity" referTo="1131594" />
+        <attribute name="input" class="SimpleEntity" referTo="29368" />
+        <attribute name="input" class="SimpleEntity" referTo="29406" />
+        <attribute name="output" class="SimpleEntity" referTo="1131223" />
+        <attribute name="output" class="SimpleEntity" referTo="113528" />
+        <attribute name="output" class="SimpleEntity" referTo="29434" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1119697" displayName="GA53+O2+alpha-ketoglutarate-&gt;GA44+CO2+succinate" isShell="false" isDirty="true">
+        <attribute name="catalystActivity" class="CatalystActivity" referTo="1118347" />
+        <attribute name="summation" class="Summation" referTo="-11" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="GA53+O2+alpha-ketoglutarate-&gt;GA44+CO2+succinate" />
+        <attribute name="name" value="RXN1F-167" />
+        <attribute name="name" value="biochemicalReaction86746" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1152617" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="71828" />
+        <attribute name="DB_ID" value="1119697" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1121499" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1121499" />
+        <attribute name="_displayName" value="GA53+O2+alpha-ketoglutarate-&gt;GA44+CO2+succinate" />
+        <attribute name="input" class="SimpleEntity" referTo="1131285" />
+        <attribute name="input" class="SimpleEntity" referTo="29368" />
+        <attribute name="input" class="SimpleEntity" referTo="29406" />
+        <attribute name="output" class="SimpleEntity" referTo="1131847" />
+        <attribute name="output" class="SimpleEntity" referTo="113528" />
+        <attribute name="output" class="SimpleEntity" referTo="29434" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1120898" displayName="GA44+alpha-ketoglutarate+O2-&gt;GA19+succinate+CO2" isShell="false" isDirty="true">
+        <attribute name="catalystActivity" class="CatalystActivity" referTo="1118656" />
+        <attribute name="summation" class="Summation" referTo="-9" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="GA44+alpha-ketoglutarate+O2-&gt;GA19+succinate+CO2" />
+        <attribute name="name" value="RXN1F-168" />
+        <attribute name="name" value="biochemicalReaction86726" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1140233" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1154399" />
+        <attribute name="DB_ID" value="1120898" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1119697" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1119697" />
+        <attribute name="_displayName" value="GA44+alpha-ketoglutarate+O2-&gt;GA19+succinate+CO2" />
+        <attribute name="input" class="SimpleEntity" referTo="1131847" />
+        <attribute name="input" class="SimpleEntity" referTo="29368" />
+        <attribute name="input" class="SimpleEntity" referTo="29406" />
+        <attribute name="output" class="SimpleEntity" referTo="1131594" />
+        <attribute name="output" class="SimpleEntity" referTo="113528" />
+        <attribute name="output" class="SimpleEntity" referTo="29434" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1120250" displayName="GA44+alpha-ketoglutarate+O2-&gt;GA38+succinate+CO2" isShell="false" isDirty="true">
+        <attribute name="catalystActivity" class="CatalystActivity" referTo="1118571" />
+        <attribute name="summation" class="Summation" referTo="-10" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="GA44+alpha-ketoglutarate+O2-&gt;GA38+succinate+CO2" />
+        <attribute name="name" value="RXN-6524" />
+        <attribute name="name" value="biochemicalReaction87021" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1142804" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="71828" />
+        <attribute name="DB_ID" value="1120250" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1119697" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1119697" />
+        <attribute name="_displayName" value="GA44+alpha-ketoglutarate+O2-&gt;GA38+succinate+CO2" />
+        <attribute name="input" class="SimpleEntity" referTo="1131847" />
+        <attribute name="input" class="SimpleEntity" referTo="29368" />
+        <attribute name="input" class="SimpleEntity" referTo="29406" />
+        <attribute name="output" class="SimpleEntity" referTo="1130843" />
+        <attribute name="output" class="SimpleEntity" referTo="113528" />
+        <attribute name="output" class="SimpleEntity" referTo="29434" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1121499" displayName="GA12+O2-&gt;GA53+H2O" isShell="false" isDirty="true">
+        <attribute name="summation" class="Summation" referTo="-5" />
+        <attribute name="_doRelease" value="false" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="GA12+O2-&gt;GA53+H2O" />
+        <attribute name="name" value="RXN1F-143" />
+        <attribute name="name" value="biochemicalReaction95548" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1135091" />
+        <attribute name="DB_ID" value="1121499" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="_displayName" value="GA12+O2-&gt;GA53+H2O" />
+        <attribute name="input" class="SimpleEntity" referTo="1132279" />
+        <attribute name="input" class="SimpleEntity" referTo="29368" />
+        <attribute name="output" class="SimpleEntity" referTo="1131285" />
+        <attribute name="output" class="SimpleEntity" referTo="29356" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1119676" displayName="GA20+alpha-ketoglutarate+O2-&gt;GA1+succinate+CO2" isShell="false" isDirty="true">
+        <attribute name="catalystActivity" class="CatalystActivity" referTo="1119207" />
+        <attribute name="summation" class="Summation" referTo="-8" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="GA20+alpha-ketoglutarate+O2-&gt;GA1+succinate+CO2" />
+        <attribute name="name" value="RXN1F-170" />
+        <attribute name="name" value="biochemicalReaction86653" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1151520" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="26646" />
+        <attribute name="DB_ID" value="1119676" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1120790" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1120790" />
+        <attribute name="_displayName" value="GA20+alpha-ketoglutarate+O2-&gt;GA1+succinate+CO2" />
+        <attribute name="input" class="SimpleEntity" referTo="1131797" />
+        <attribute name="input" class="SimpleEntity" referTo="29368" />
+        <attribute name="input" class="SimpleEntity" referTo="29406" />
+        <attribute name="output" class="SimpleEntity" referTo="1130787" />
+        <attribute name="output" class="SimpleEntity" referTo="113528" />
+        <attribute name="output" class="SimpleEntity" referTo="29434" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+      <instance DB_ID="1120790" displayName="GA19+O2+alpha-ketoglutarate-&gt;GA20+CO2+succinate" isShell="false" isDirty="true">
+        <attribute name="catalystActivity" class="CatalystActivity" referTo="1118571" />
+        <attribute name="summation" class="Summation" referTo="-7" />
+        <attribute name="created" class="InstanceEdit" referTo="1164949" />
+        <attribute name="name" value="GA19+O2+alpha-ketoglutarate-&gt;GA20+CO2+succinate" />
+        <attribute name="name" value="RXN1F-169" />
+        <attribute name="name" value="biochemicalReaction86709" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="1146765" />
+        <attribute name="crossReference" class="DatabaseIdentifier" referTo="71828" />
+        <attribute name="DB_ID" value="1120790" />
+        <attribute name="species" class="Species" referTo="186860" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1120898" />
+        <attribute name="precedingEvent" class="Reaction" referTo="1120898" />
+        <attribute name="_displayName" value="GA19+O2+alpha-ketoglutarate-&gt;GA20+CO2+succinate" />
+        <attribute name="input" class="SimpleEntity" referTo="1131594" />
+        <attribute name="input" class="SimpleEntity" referTo="29368" />
+        <attribute name="input" class="SimpleEntity" referTo="29406" />
+        <attribute name="output" class="SimpleEntity" referTo="1131797" />
+        <attribute name="output" class="SimpleEntity" referTo="113528" />
+        <attribute name="output" class="SimpleEntity" referTo="29434" />
+        <attribute name="compartment" class="EntityCompartment" referTo="70101" />
+      </instance>
+    </Reaction>
+    <EntityCompartment>
+      <instance DB_ID="70101" displayName="cytosol" isShell="false" isDirty="false">
+        <attribute name="DB_ID" value="70101" />
+        <attribute name="definition" value="The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes." />
+        <attribute name="referenceDatabase" class="ReferenceDatabase" referTo="1" />
+        <attribute name="instanceOf" class="GO_CellularComponent" referTo="258163" />
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+          <Output id="16" points="189 461" />
+          <Output id="183" points="166 436" />
+          <Output id="124" points="160 446" />
+        </Outputs>
+        <Catalysts>
+          <Catalyst id="17" points="193 401" />
+        </Catalysts>
+      </org.gk.render.RenderableReaction>
+      <org.gk.render.EntitySetAndEntitySetLink id="18" points="272 364, 385 263" position="328 313" lineWidth="0.5" lineColor="128 128 128">
+        <Inputs>
+          <Input id="17" />
+        </Inputs>
+        <Outputs>
+          <Output id="13" />
+        </Outputs>
+      </org.gk.render.EntitySetAndEntitySetLink>
+      <org.gk.render.RenderableReaction id="28" reactomeId="1120250" points="732 353, 768 372, 766 415" position="768 372" lineWidth="1.0">
+        <Inputs>
+          <Input id="10" points="388 325" />
+          <Input id="133" points="646 364" />
+          <Input id="234" points="716 371" />
+        </Inputs>
+        <Outputs>
+          <Output id="29" points="766 489" />
+          <Output id="185" points="693 445" />
+          <Output id="120" points="704 419" />
+        </Outputs>
+        <Catalysts>
+          <Catalyst id="142" points="777 375" />
+        </Catalysts>
+      </org.gk.render.RenderableReaction>
+      <org.gk.render.RenderableReaction id="39" reactomeId="1120790" points="179 546, 196 555, 198 585" position="196 555" lineWidth="1.0">
+        <Inputs>
+          <Input id="16" points="147 546" />
+          <Input id="137" points="137 530" />
+          <Input id="236" points="187 511" />
+        </Inputs>
+        <Outputs>
+          <Output id="40" points="140 614" />
+          <Output id="194" points="209 624" />
+          <Output id="187" points="155 592" />
+        </Outputs>
+        <Catalysts>
+          <Catalyst id="47" points="209 556" />
+        </Catalysts>
+      </org.gk.render.RenderableReaction>
+      <org.gk.render.RenderableReaction id="51" reactomeId="1119676" points="204 681, 218 693, 221 729" position="218 693" lineWidth="1.0">
+        <Inputs>
+          <Input id="40" points="210 660" />
+          <Input id="116" points="141 686" />
+          <Input id="238" points="177 673" />
+        </Inputs>
+        <Outputs>
+          <Output id="52" points="205 724" />
+          <Output id="126" points="222 743" />
+          <Output id="189" points="159 744" />
+        </Outputs>
+        <Catalysts>
+          <Catalyst id="53" points="237 692" />
+        </Catalysts>
+      </org.gk.render.RenderableReaction>
+      <org.gk.render.EntitySetAndEntitySetLink id="54" points="281 668, 249 418" position="265 543" lineWidth="0.5" lineColor="128 128 128">
+        <Inputs>
+          <Input id="53" />
+        </Inputs>
+        <Outputs>
+          <Output id="17" />
+        </Outputs>
+      </org.gk.render.EntitySetAndEntitySetLink>
+      <org.gk.render.RenderableReaction id="203" reactomeId="1120398" points="520 471, 502 558, 502 587" position="502 558" lineWidth="1.0">
+        <Inputs>
+          <Input id="216" points="433 490" />
+          <Input id="16" points="484 500" />
+          <Input id="206" points="251 483" />
+        </Inputs>
+        <Outputs>
+          <Output id="210" points="434 641" />
+          <Output id="212" points="452 601" />
+          <Output id="204" points="501 670" />
+        </Outputs>
+        <Catalysts>
+          <Catalyst id="208" points="518 559" />
+        </Catalysts>
+      </org.gk.render.RenderableReaction>
+    </Edges>
+    <Pathways />
+  </Process>
+</rtpj>
+
Jaiswal Lab