From: meiera Date: Mon, 4 Jan 2016 19:50:50 +0000 (+0000) Subject: Changed "Austin Meier" to "austin_meier" in z.mays gene assoc file. X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=01a47463a3adb6454d2ca198a1bfb333fd857ab1;p=associations%2F.git Changed "Austin Meier" to "austin_meier" in z.mays gene assoc file. svn path=/; revision=669 --- diff --git a/to-associations/TO_IMP_gene_Z.mays.assoc b/to-associations/TO_IMP_gene_Z.mays.assoc index f88ee04..b4fa992 100644 --- a/to-associations/TO_IMP_gene_Z.mays.assoc +++ b/to-associations/TO_IMP_gene_Z.mays.assoc @@ -115,8 +115,8 @@ MaizeGDB 12148 dek1 grain shape TO:0002730 PMID:21423772 IMP GRMZM2G321753 th MaizeGDB 12197 du1 enzyme activity trait TO:0000599 PMID:21423772 IMP T GRMZM2G141399 starch debranching enzyme I absent in developing endosperm gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12197 du1 sugary endosperm TO:0000099 PMID:21423772 IMP T GRMZM2G141399 kernel is sweet at milk stage; typical of su1 gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12197 du1 wrinkled seed TO:0000718 PMID:21423772 IMP T GRMZM2G141399 kernel is wrinkled, hard and translucent when dry gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 1219936 spi1 kernel number per ear TO:0000937 PMID:21423772 IMP T GRMZM2G025222 The number of kernals on the cob is reduced gene taxon:4577 20150619 Austin Meier -MaizeGDB 1219936 spi1 tassel branch number TO:0000813 PMID:21423772 IMP T GRMZM2G025222 number of tassel spikelets greatly reduced gene taxon:4577 20150619 Austin Meier +MaizeGDB 1219936 spi1 kernel number per ear TO:0000937 PMID:21423772 IMP T GRMZM2G025222 The number of kernals on the cob is reduced gene taxon:4577 20150619 austin_meier +MaizeGDB 1219936 spi1 tassel branch number TO:0000813 PMID:21423772 IMP T GRMZM2G025222 number of tassel spikelets greatly reduced gene taxon:4577 20150619 austin_meier !MaizeGDB 12218 et1 PMID:21423772 IMP GRMZM2G157574 surface of kernel strewn with small pits or indentations gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12218 et1 enzyme activity trait TO:0000599 PMID:21423772 IMP T GRMZM2G157574 starch debranching enzyme I absent in developing endosperm gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12218 et1 floury endosperm TO:0000104 PMID:21423772 IMP T GRMZM2G157574 interior floury gene taxon:4577 20150618 Ethan Johnson @@ -188,10 +188,10 @@ MaizeGDB 12553 pl1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM2G70 MaizeGDB 12553 pl1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM2G701063 cell to cell variability in the levels of anthocyanin production. gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12553 pl1 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM2G701063 Aleuron has blotches of anthocyanin pigmentation gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12553 pl1 variegated leaf TO:0000069 PMID:21423772 IMP T GRMZM2G701063 striped leaves gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12562 ps1 cotyledon TO:0000750 PMID:21423772 IMP T GRMZM5G849107 pink coloration of scutellum gene taxon:4577 20150619 Austin Meier -MaizeGDB 12562 ps1 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM5G849107 pink coloration of endosperm gene taxon:4577 20150619 Austin Meier +MaizeGDB 12562 ps1 cotyledon TO:0000750 PMID:21423772 IMP T GRMZM5G849107 pink coloration of scutellum gene taxon:4577 20150619 austin_meier +MaizeGDB 12562 ps1 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM5G849107 pink coloration of endosperm gene taxon:4577 20150619 austin_meier MaizeGDB 12562 ps1 leaf color TO:0000326 PMID:21423772 IMP T GRMZM5G849107 Seedling leaves are white. gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12562 ps1 vivipary TO:0000619 PMID:21423772 IMP T GRMZM5G849107 viviparous embryo gene taxon:4577 20150619 Austin Meier +MaizeGDB 12562 ps1 vivipary TO:0000619 PMID:21423772 IMP T GRMZM5G849107 viviparous embryo gene taxon:4577 20150619 austin_meier MaizeGDB 12573 tan1 cell cycle trait TO:0000728 PMID:21423772 IMP T GRMZM2G039113 irregular cell division placement in leaf epidermis (results in irregularly shaped cells) gene taxon:4577 20150622 MaizeGDB 12573 tan1 leaf height TO:0000541 PMID:21423772 IMP T GRMZM2G039113 leaves short gene taxon:4577 20150622 MaizeGDB 12573 tan1 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G039113 plant short gene taxon:4577 20150622 @@ -210,16 +210,16 @@ MaizeGDB 12579 ra3 fascicled ear TO:0000715 PMID:21423772 IMP T GRMZM2G014729 e MaizeGDB 12595 rf2 anther shape TO:0000214 PMID:21423772 IMP T GRMZM2G058675 Anthers shriveled gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12595 rf2 male sterility TO:0000437 PMID:21423772 IMP T GRMZM2G058675 Male sterile gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12595 rf2 pollen free TO:0000245 PMID:21423772 IMP T GRMZM2G058675 Pollen absent or aborted. gene taxon:4577 20150619 Ethan Johnson -!MaizeGDB 12602 rgd1 PMID:25774204 IMP GRMZM2G020187 leaf blade absent gene taxon:4577 20150619 Austin Meier -!MaizeGDB 12602 rgd1 PMID:21423772 IMP GRMZM2G020187 difficulty emerging gene taxon:4577 20150619 Austin Meier +!MaizeGDB 12602 rgd1 PMID:25774204 IMP GRMZM2G020187 leaf blade absent gene taxon:4577 20150619 austin_meier +!MaizeGDB 12602 rgd1 PMID:21423772 IMP GRMZM2G020187 difficulty emerging gene taxon:4577 20150619 austin_meier MaizeGDB 12602 rgd1 leaf shape TO:0000492 PMID:21423772 IMP T GRMZM2G020187 seedling leaves divided gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12602 rgd1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G020187 seedling leaves narrow gene taxon:4577 20150619 Austin Meier -MaizeGDB 12602 rgd1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G020187 seedling leaves thread-like gene taxon:4577 20150619 Austin Meier -MaizeGDB 12609 rp1 disease resistance TO:0000112 PMID:25805314 IMP T AC152495.1_FG002 Plants are partially resistance to Puccinia polysora gene taxon:4577 20150619 Austin Meier -MaizeGDB 12609 rp1 disease resistance TO:0000112 PMID:25805314 IMP T AC152495.1_FG002 Plants are partially resistance to Puccinia sorghi gene taxon:4577 20150619 Austin Meier -MaizeGDB 12609 rp1 disease resistance TO:0000112 PMID:25805314 IMP T AC152495.1_FG002 resistant to Puccinia sorghi gene taxon:4577 20150619 Austin Meier -MaizeGDB 12616 rs1 leaf sheath anatomy and morphology trait TO:0000835 PMID:24218490 IMP T GRMZM2G028041 leaf sheath is rough gene taxon:4577 20150619 Austin Meier -MaizeGDB 12616 rs1 leaf vein anatomy and morphology trait TO:0000820 PMID:24218490 IMP T GRMZM2G028041 Scattered proliferations of tissue at veins on leaf, leading to a bumpy, irregular appearance. gene taxon:4577 20150619 Austin Meier +MaizeGDB 12602 rgd1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G020187 seedling leaves narrow gene taxon:4577 20150619 austin_meier +MaizeGDB 12602 rgd1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G020187 seedling leaves thread-like gene taxon:4577 20150619 austin_meier +MaizeGDB 12609 rp1 disease resistance TO:0000112 PMID:25805314 IMP T AC152495.1_FG002 Plants are partially resistance to Puccinia polysora gene taxon:4577 20150619 austin_meier +MaizeGDB 12609 rp1 disease resistance TO:0000112 PMID:25805314 IMP T AC152495.1_FG002 Plants are partially resistance to Puccinia sorghi gene taxon:4577 20150619 austin_meier +MaizeGDB 12609 rp1 disease resistance TO:0000112 PMID:25805314 IMP T AC152495.1_FG002 resistant to Puccinia sorghi gene taxon:4577 20150619 austin_meier +MaizeGDB 12616 rs1 leaf sheath anatomy and morphology trait TO:0000835 PMID:24218490 IMP T GRMZM2G028041 leaf sheath is rough gene taxon:4577 20150619 austin_meier +MaizeGDB 12616 rs1 leaf vein anatomy and morphology trait TO:0000820 PMID:24218490 IMP T GRMZM2G028041 Scattered proliferations of tissue at veins on leaf, leading to a bumpy, irregular appearance. gene taxon:4577 20150619 austin_meier MaizeGDB 12617 rs2 leaf sheath anatomy and morphology trait TO:0000835 PMID:21423772 IMP T GRMZM2G403620 leaf sheath is rough gene taxon:4577 20150619 MaizeGDB 12617 rs2 ligule anatomy and morphology trait TO:0002748 PMID:21423772 IMP T GRMZM2G403620 abnormality of ligule gene taxon:4577 20150619 MaizeGDB 12664 su1 enzyme activity trait TO:0000599 PMID:21423772 IMP T GRMZM2G138060 starch debranching enzyme I absent in developing endosperm gene taxon:4577 20150619 @@ -278,7 +278,7 @@ MaizeGDB 25995 crp1 seedling growth and development trait TO:0000949 PMID:25774 MaizeGDB 274903 dcd1 mitotic cell cycle trait TO:0000730 PMID:21423772 IMP T GRMZM2G083459 Leaf epidermis cell division asymmetric gene taxon:4577 20150618 Ethan Johnson MaizeGDB 274903 dcd1 plant cell shape TO:0002682 PMID:21423772 IMP T GRMZM2G083459 cork cells abnormal gene taxon:4577 20150618 Ethan Johnson MaizeGDB 274903 dcd1 plant cell shape TO:0002682 PMID:21423772 IMP T GRMZM2G083459 silica cells abnormal gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 30011 rld1 leaf anatomy and morphology trait TO:0000748 PMID:21423772 IMP T GRMZM2G109987 adaxial traits on the abaxial side of the leaves gene taxon:4577 20150619 Austin Meier +MaizeGDB 30011 rld1 leaf anatomy and morphology trait TO:0000748 PMID:21423772 IMP T GRMZM2G109987 adaxial traits on the abaxial side of the leaves gene taxon:4577 20150619 austin_meier MaizeGDB 30011 rld1 leaf rolling TO:0000085 PMID:21423772 IMP T GRMZM2G109987 leaves are rolled gene taxon:4577 20150619 Ethan Johnson !MaizeGDB 30023 vp10 PMID:21423772 IMP GRMZM2G067176 seedling leaves stuck together gene taxon:4577 20150622 !MaizeGDB 30023 vp10 PMID:21423772 IMP GRMZM2G067176 tassels stuck together gene taxon:4577 20150622 !! @@ -301,10 +301,10 @@ MaizeGDB 60438 bif2 inflorescence branching TO:0000050 PMID:21423772 IMP T GRMZ MaizeGDB 60468 dlf1 flowering time trait TO:0002616 PMID:21423772 IMP T GRMZM2G067921 mature plant 7-10 days later in flowering than normal gene taxon:4577 20150617 Ethan Johnson MaizeGDB 60468 dlf1 node number TO:0000634 PMID:21423772 IMP T GRMZM2G067921 4-6 more nodes and leaves than normal. gene taxon:4577 20150617 Ethan Johnson MaizeGDB 60468 dlf1 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G321753 mature plant 2-3 feet taller than normal. gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 60513 rth1 root hair length TO:0002665 PMID:21423772 IMP T GRMZM2G099056 root hairs fail to elongate gene taxon:4577 20150619 Austin Meier +MaizeGDB 60513 rth1 root hair length TO:0002665 PMID:21423772 IMP T GRMZM2G099056 root hairs fail to elongate gene taxon:4577 20150619 austin_meier MaizeGDB 60513 rth1 root shape TO:0002710 PMID:21423772 IMP T GRMZM2G099056 general term to describe abnormality in root system gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 60515 rth3 root hair length TO:0002665 PMID:21423772 IMP T GRMZM2G377215 root hair decreased length gene taxon:4577 20150619 Austin Meier -MaizeGDB 60515 rth3 root hair length TO:0002665 PMID:21423772 IMP T GRMZM2G377215 root hairs fail to elongate gene taxon:4577 20150619 Austin Meier +MaizeGDB 60515 rth3 root hair length TO:0002665 PMID:21423772 IMP T GRMZM2G377215 root hair decreased length gene taxon:4577 20150619 austin_meier +MaizeGDB 60515 rth3 root hair length TO:0002665 PMID:21423772 IMP T GRMZM2G377215 root hairs fail to elongate gene taxon:4577 20150619 austin_meier MaizeGDB 60537 tsh1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM2G325850 abnormality of the tassel gene taxon:4577 20150622 !MaizeGDB 61077 ns1 PMID:21423772 IMP GRMZM2G069028 Plants (stems) do not elongate in response to gibberellins. gene taxon:4577 20150619 Ethan Johnson MaizeGDB 61077 ns1 internode length TO:0000145 PMID:21423772 IMP T GRMZM2G069028 internode elongation reduced gene taxon:4577 20150619 Ethan Johnson @@ -327,15 +327,15 @@ MaizeGDB 854977 brk1 plant cell shape TO:0002682 PMID:21423772 IMP T GRMZM5G842 MaizeGDB 86035 mac1 cell growth and development trait TO:0002686 PMID:25713378 IMP T GRMZM2G027522 More archesporial cells in developing anthers gene taxon:4577 20150619 Ethan Johnson MaizeGDB 86035 mac1 cell growth and development trait TO:0002686 PMID:25713378 IMP T GRMZM2G027522 More archesporial cells in developing ovules. gene taxon:4577 20150619 Ethan Johnson MaizeGDB 86035 mac1 sterility related trait TO:0000485 PMID:25713378 IMP T GRMZM2G027522 Male and female sterile. gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 870601 sgo1 anther shape TO:0000214 PMID:21423772 IMP T GRMZM2G074082 Anthers shriveled gene taxon:4577 20150619 Austin Meier -MaizeGDB 870601 sgo1 male sterility TO:0000437 PMID:21423772 IMP T GRMZM2G074082 Male sterile gene taxon:4577 20150619 Austin Meier -MaizeGDB 870601 sgo1 pollen abortion type TO:0000218 PMID:21423772 IMP T GRMZM2G074082 Pollen absent or aborted. gene taxon:4577 20150619 Austin Meier +MaizeGDB 870601 sgo1 anther shape TO:0000214 PMID:21423772 IMP T GRMZM2G074082 Anthers shriveled gene taxon:4577 20150619 austin_meier +MaizeGDB 870601 sgo1 male sterility TO:0000437 PMID:21423772 IMP T GRMZM2G074082 Male sterile gene taxon:4577 20150619 austin_meier +MaizeGDB 870601 sgo1 pollen abortion type TO:0000218 PMID:21423772 IMP T GRMZM2G074082 Pollen absent or aborted. gene taxon:4577 20150619 austin_meier MaizeGDB 871231 pac1 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM2G058292 Reduced pigmentation in aleurone gene taxon:4577 20150619 Ethan Johnson MaizeGDB 886495 sal1 aleurone layer anatomy and morphology trait TO:0000942 PMID:21423772 IMP GRMZM2G117935 multiple cell layers in the aleurone tissue gene taxon:4577 20150622 !MaizeGDB 9017732 cf1 PMID:25774204 IMP GRMZM2G026117 Leaves develop irregular nonclonal, yellow_green sectors, which leads to an appearance similar to military camouflage. Sectors can turn necrotic. gene taxon:4577 20150616 Ethan Johnson MaizeGDB 9018083 vp15 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G121468 kernels germinate while still on the ear gene taxon:4577 20150622 MaizeGDB 9019783 caf2 leaf color TO:0000326 PMID:25725436 IMP T AC199526.5_FG003 Seedling leaves are white. gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 941309 rnc1 leaf color TO:0000326 PMID:21423772 IMP T GRMZM2G035820 Seedling leaves are white. gene taxon:4577 20150619 Austin Meier +MaizeGDB 941309 rnc1 leaf color TO:0000326 PMID:21423772 IMP T GRMZM2G035820 Seedling leaves are white. gene taxon:4577 20150619 austin_meier !MaizeGDB 969623 mwp1 PMID:21423772 IMP GRMZM2G082264 ligule on outside of leaf at base of auricle gene taxon:4577 20150619 Ethan Johnson !MaizeGDB 969623 mwp1 PMID:21423772 IMP GRMZM2G082264 sometimes upper leaves may be crinkly (cr) or wab-like (wavy auricle in blade-like) gene taxon:4577 20150619 Ethan Johnson MaizeGDB 969623 mwp1 leaf sheath auricle pubescence TO:0002716 PMID:21423772 IMP T GRMZM2G082264 may have hairy sheaths gene taxon:4577 20150619 Ethan Johnson