From: cooperl Date: Wed, 4 Oct 2023 19:44:36 +0000 (+0000) Subject: Updating files formats to gaf 2.1 X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=2d11e835bb259ca8eace7b659f7810b001839aad;p=associations%2F.git Updating files formats to gaf 2.1 svn path=/; revision=1040 --- diff --git a/po-associations/po_anatomy_gene_model_zea_MaizeGDB.assoc b/po-associations/po_anatomy_gene_model_zea_MaizeGDB.assoc index 33b045a..b04074c 100644 --- a/po-associations/po_anatomy_gene_model_zea_MaizeGDB.assoc +++ b/po-associations/po_anatomy_gene_model_zea_MaizeGDB.assoc @@ -1,4 +1,4 @@ -!gaf-version: 2.0 +!gaf-version: 2.1 MaizeGDB GRMZM2G000014 GRMZM2G000014 PO:0000037 PMID:21299659|MaizeGDB_REF:9021423 IEP A GRMZM2G000014 gene_model taxon:4577 20111006 MaizeGDB MaizeGDB GRMZM2G000014 GRMZM2G000014 PO:0006310 PMID:21299659|MaizeGDB_REF:9021423 IEP A GRMZM2G000014 gene_model taxon:4577 20111006 MaizeGDB MaizeGDB GRMZM2G000014 GRMZM2G000014 PO:0006339 PMID:21299659|MaizeGDB_REF:9021423 IEP A GRMZM2G000014 gene_model taxon:4577 20111006 MaizeGDB diff --git a/po-associations/po_anatomy_gene_physcomitrella_gramene.assoc b/po-associations/po_anatomy_gene_physcomitrella_gramene.assoc index ce28cd3..f74dbbf 100644 --- a/po-associations/po_anatomy_gene_physcomitrella_gramene.assoc +++ b/po-associations/po_anatomy_gene_physcomitrella_gramene.assoc @@ -1,4 +1,4 @@ -!gaf-version: 2.0 +!gaf-version: 2.1 Gramene ESTEXT_GENEWISE1.C_800048 FtsZ2-1 PO:0030002 PMID:19567705 IEP A plastid division protein gene taxon:3218 20110525 Jaiswal_lab Gramene ESTEXT_GENEWISE1.C_800048 FtsZ2-1 PO:0030023 PMID:19567705 IEP A plastid division protein gene taxon:3218 20110525 Jaiswal_lab Gramene ESTEXT_FGENESH1_PM.C_3810004 ACTIN3 PO:0030002 PMID:19567705 IEP A Actin 3 ACT3 gene taxon:3218 20110525 Jaiswal_lab diff --git a/po-associations/po_anatomy_gene_vitis_poc.assoc b/po-associations/po_anatomy_gene_vitis_poc.assoc index 7099a6f..8e5c639 100644 --- a/po-associations/po_anatomy_gene_vitis_poc.assoc +++ b/po-associations/po_anatomy_gene_vitis_poc.assoc @@ -1,4 +1,4 @@ -!gaf-version: 2.0 +!gaf-version: 2.1 CRIBI_Vitis VIT_00s0125g00150 VIT_00s0125g00150 PO:0004709 PMID:22948079 IEP A gene taxon:29760 20121215 POC:Laurel_Cooper participates_in(PO:0025532) CRIBI_Vitis VIT_00s0125g00300 VIT_00s0125g00300 PO:0009029 PMID:22948079 IEP A gene taxon:29760 20121215 POC:Laurel_Cooper participates_in(PO:0007016) CRIBI_Vitis VIT_00s0125g00300 VIT_00s0125g00300 PO:0009032 PMID:22948079 IEP A gene taxon:29760 20121215 POC:Laurel_Cooper participates_in(PO:0007016) diff --git a/po-associations/po_anatomy_mRNA_physcomitrella_cosmoss_V1.2.assoc b/po-associations/po_anatomy_mRNA_physcomitrella_cosmoss_V1.2.assoc index e3a4794..f332faa 100644 --- a/po-associations/po_anatomy_mRNA_physcomitrella_cosmoss_V1.2.assoc +++ b/po-associations/po_anatomy_mRNA_physcomitrella_cosmoss_V1.2.assoc @@ -1,4 +1,4 @@ -!gaf-version: 2.0 +!gaf-version: 2.1 cosmoss_PpV1.2 Pp1s10008_1V2.1 Pp1s10008_1V2.1 PO:0000006 PMID:18762443|PMID:18079367 IEP A Phypa_104242|PHYPADRAFT_104242 mRNA taxon:3218 20110906 plantco.de|cosmoss.org occurs_in(PECO:0007265) cosmoss_PpV1.2:Pp1s10008_1V2.1 cosmoss_PpV1.2 Pp1s10008_1V2.1 Pp1s10008_1V2.1 PO:0025017 PMID:18762443|PMID:18079367 IEP A Phypa_104242|PHYPADRAFT_104242 mRNA taxon:3218 20110906 plantco.de|cosmoss.org cosmoss_PpV1.2:Pp1s10008_1V2.1 cosmoss_PpV1.2 Pp1s10008_1V2.1 Pp1s10008_1V2.1 PO:0030003 PMID:18762443|PMID:18079367 IEP A Phypa_104242|PHYPADRAFT_104242 mRNA taxon:3218 20110906 plantco.de|cosmoss.org occurs_in(PECO:0007262) cosmoss_PpV1.2:Pp1s10008_1V2.1 diff --git a/po-associations/po_gene_Capsicum_sgn.assoc b/po-associations/po_gene_Capsicum_sgn.assoc index 975a3e9..03b3257 100644 --- a/po-associations/po_gene_Capsicum_sgn.assoc +++ b/po-associations/po_gene_Capsicum_sgn.assoc @@ -1,4 +1,4 @@ -!gaf-version: 2.0 +!gaf-version: 2.1 SGN_gene 3826 CanPI-3 PO:0009001 PMID:19393726 IEP NCBI_gi:62467829 A Pin2-type proteinase inhibitor (PI-3) PI-3 gene taxon:4071 20090813 SGN SGN_gene 3857 CaPI-2 PO:0009047 SGN_ref:17993 IEP NCBI_gi:2745897 A wound-induced proteinase inhibitor II precursor Pin2|CanPI-1 gene taxon:4071 20090807 SGN SGN_gene 3857 CaPI-2 PO:0009005 SGN_ref:17993 IEP NCBI_gi:2745897 A wound-induced proteinase inhibitor II precursor Pin2|CanPI-1 gene taxon:4071 20090807 SGN diff --git a/po-associations/po_gene_Datura_sgn.assoc b/po-associations/po_gene_Datura_sgn.assoc index 8ab906d..74cb857 100644 --- a/po-associations/po_gene_Datura_sgn.assoc +++ b/po-associations/po_gene_Datura_sgn.assoc @@ -1,4 +1,4 @@ -!gaf-version: 2.0 +!gaf-version: 2.1 SGN_gene 4510 DUTROPR_I PO:0000008 PMID:8415746 IEP NCBI_gi:424159 A tropinone reductase I gene taxon:4074 20080404 SGN SGN_gene 5003 pmt2 PO:0009005 PMID:17221359 IEP NCBI_gi:35208828 A putrescine N-methyltransferase 2 pmt gene taxon:4074 20090625 SGN SGN_gene 5004 pmt1 PO:0009005 PMID:17221359 IEP NCBI_gi:86438863 A putrescine N-methyltransferase 1 PMT gene taxon:4074 20090702 SGN diff --git a/po-associations/po_gene_Nicotiana_sgn.assoc b/po-associations/po_gene_Nicotiana_sgn.assoc index 7434f5b..3268663 100644 --- a/po-associations/po_gene_Nicotiana_sgn.assoc +++ b/po-associations/po_gene_Nicotiana_sgn.assoc @@ -1,4 +1,4 @@ -!gaf-version: 2.0 +!gaf-version: 2.1 SGN_gene 4501 CYP82E4v1 PO:0009025 PMID:16192354 IEP NCBI_gi:74475187 A CYP82E4v1 gene taxon:4085 20080201 SGN SGN_gene 4502 CYP82E4v2 PO:0009025 PMID:16192354 IEP NCBI_gi:74475185 A CYP82E4v2 gene taxon:4085 20080201 SGN SGN_gene 6727 pmt3 PO:0009005 PMID:10965939 IEP NCBI_gi:9453833 A putrescine N-methyltransferase 3 NtPMT3 gene taxon:4085 20090630 SGN diff --git a/po-associations/po_gene_Petunia_sgn.assoc b/po-associations/po_gene_Petunia_sgn.assoc index 2f22f84..9a21dfa 100644 --- a/po-associations/po_gene_Petunia_sgn.assoc +++ b/po-associations/po_gene_Petunia_sgn.assoc @@ -1,4 +1,4 @@ -!gaf-version: 2.0 +!gaf-version: 2.1 SGN_gene 8298 MAW PO:0009025 PMID:19717616 IMP A MAEWEST gene taxon:4101 20091023 SGN SGN_gene 8298 MAW PO:0009046 PMID:19717616 IMP A MAEWEST gene taxon:4101 20091023 SGN SGN_gene 8299 CHSU PO:0009046 PMID:19717616 IMP A CHORIPETALA SUZANNE gene taxon:4101 20091023 SGN diff --git a/po-associations/po_gene_S.lycopersicum_sgn.assoc b/po-associations/po_gene_S.lycopersicum_sgn.assoc index 7c25875..70b6200 100644 --- a/po-associations/po_gene_S.lycopersicum_sgn.assoc +++ b/po-associations/po_gene_S.lycopersicum_sgn.assoc @@ -1,4 +1,4 @@ -!gaf-version: 2.0 +!gaf-version: 2.1 SGN_gene 128 an PO:0009049 SGN_ref:861 IMP A anantha an^1|an^2|ca|Solyc02g081670 gene taxon:4081 20071016 SGN SGN_gene 484 etr4 PO:0009001 PMID:17655616 IMP A ethylene receptor homolog (ETR4) LeETR4|ETR4|Solyc06g053710 gene taxon:4081 20070927 SGN SGN_gene 538 fas PO:0009001 PMID:15292992 IMP A fasciated Solyc11g071810 gene taxon:4081 20071107 SGN diff --git a/po-associations/po_gene_Z.mays_PPPP.assoc b/po-associations/po_gene_Z.mays_PPPP.assoc index 6a503c9..a43fc3d 100644 --- a/po-associations/po_gene_Z.mays_PPPP.assoc +++ b/po-associations/po_gene_Z.mays_PPPP.assoc @@ -1,4 +1,4 @@ -!gaf-version: 2.0 +!gaf-version: 2.1 MaizeGDB 854977 brk1 PO:0004013 PMID:21423772 IMP A GRMZM5G842058 brick1 gene taxon:4577 20150504 Planteome:Ethan_Johnson MaizeGDB 854977 brk1 PO:0025215 PMID:21423772 IMP A GRMZM5G842058 brick1 gene taxon:4577 20150504 Planteome:Ethan_Johnson MaizeGDB 854977 brk1 PO:0000047 PMID:21423772 IMP A GRMZM5G842058 brick1 gene taxon:4577 20150504 Planteome:Ethan_Johnson diff --git a/po-associations/po_growth_qtl_oryza_gramene.assoc b/po-associations/po_growth_qtl_oryza_gramene.assoc index 707e90a..8fd97d2 100644 --- a/po-associations/po_growth_qtl_oryza_gramene.assoc +++ b/po-associations/po_growth_qtl_oryza_gramene.assoc @@ -1,4 +1,4 @@ -!gaf-version: 2.0 +!gaf-version: 2.1 GR_QTL CQG5 ABXSTOFQ PO:0007134 GR_ref:7810 IMP G abaxial stomatal frequency QTL taxon:4530 20090923 Gramene GR_QTL CQG5 ABXSTOFQ PO:0007130 GR_ref:11453 IC G abaxial stomatal frequency QTL taxon:4530 20090923 Gramene GR_QTL CQG2 ABXSTOFQ PO:0007134 GR_ref:7810 IMP G abaxial stomatal frequency qabs3 QTL taxon:4530 20090923 Gramene