From: elserj <elserj@localhost>
Date: Wed, 6 Apr 2011 21:44:15 +0000 (+0000)
Subject: Changed Zea mays to use the header from maizesequence.org
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=2d8e095dd12e0c3734fc9c3c7ffd59b519b22bee;p=old-jaiswallab-svn%2F.git

Changed Zea mays to use the header from maizesequence.org

svn path=/; revision=90
---

diff --git a/interactome_scripts/find_species.pl b/interactome_scripts/find_species.pl
index ef7188d..2fdf90e 100755
--- a/interactome_scripts/find_species.pl
+++ b/interactome_scripts/find_species.pl
@@ -274,8 +274,8 @@ sub find_gene {
 		my ($name,$gene_id,$chrom_id,$id) = split(/\|/,$gene_header);
 		$gene = $gene_id; #???
 	}elsif ($species eq "Zea_mays") {
-		my ($name,$gene_id,$unknown,$transcript) = split(/\|/, $gene_header);
-		$gene = $transcript
+		my ($transcript,$seq_type,$coord,$parent_transcript,$parent_gene) = split(/;\s/, $gene_header);
+		$gene = $transcript;
 	}else {
 		die "Error: Gene id can not be found for species $species!";
 	}