From: elserj <elserj@localhost>
Date: Fri, 8 Mar 2019 19:08:40 +0000 (+0000)
Subject: Fix O. sativa Aus kasalath
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=2e20dea2f7b036c82161e153f141c4b5cde4071f;p=old-jaiswallab-svn%2F.git

Fix O. sativa Aus kasalath

svn path=/; revision=662
---

diff --git a/interactome_scripts/find_species.pl b/interactome_scripts/find_species.pl
index fd38e36..10716bc 100755
--- a/interactome_scripts/find_species.pl
+++ b/interactome_scripts/find_species.pl
@@ -226,6 +226,8 @@ sub find_species {
 		$species = "Oryza_punctata";
 	}elsif ($temp =~ /Oryza\_rufipogon/) {
 		$species = "Oryza_rufipogon";
+	}elsif ($temp =~ /Oryza\_sativa\.AUS\.kasalath/) {
+		$species = "Oryza_sativa.AUS.kasalath";
 	}elsif ($temp =~ /Oryza\_sativa\.AUS\.N22/) {
 		$species = "Oryza_sativa.AUS.N22";
 	}elsif ($temp =~ /Oryza\_sativa.indica\_/) {
@@ -634,6 +636,9 @@ sub find_gene {
 		$gene = ensembl_gene($gene_header);
 	}elsif ($species eq "Oryza_sativa.indica") {
 		$gene = ensembl_gene($gene_header);
+	}elsif ($species eq "Oryza_sativa.AUS.kasalath") {
+		my ($gene_id, $strand, $start, $stop) = split(/\|/, $gene_header);
+		$gene = $gene_id;
 	}elsif ($species eq "Oryza_sativa.AUS.N22") {
 		$gene = $gene_header;
 	}elsif ($species eq "Oryza_sativa.indica.9311.OGE") {