From: elserj <elserj@localhost>
Date: Wed, 28 Dec 2016 20:50:08 +0000 (+0000)
Subject: Add more beavers
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=2f919c7c692104c5e3166010278f304d1092daa6;p=old-jaiswallab-svn%2F.git

Add more beavers

svn path=/; revision=654
---

diff --git a/interactome_scripts/find_species.pl b/interactome_scripts/find_species.pl
index 327d902..5dcb80d 100755
--- a/interactome_scripts/find_species.pl
+++ b/interactome_scripts/find_species.pl
@@ -58,6 +58,10 @@ sub find_species {
 		$species = "Castor_canadensis.binpacker";
 	}elsif ($temp =~ /Castor_canadensis.velvet/) {
 		$species = "Castor_canadensis.velvet";
+	}elsif ($temp =~ /Castor_canadensis.brent.proteins/) {
+		$species = "Castor_canadensis.brent.proteins";
+	}elsif ($temp =~ /Castor_canadensis.brent.transcripts/) {
+		$species = "Castor_canadensis.brent.transcripts";
 	}elsif ($temp =~ /Cavia_porcellus/) {
 		$species = "Cavia_porcellus";
 	}elsif ($temp =~ /Chlamy/) {
@@ -376,6 +380,12 @@ sub find_gene {
 		my ($m_id, $g_id, $temp) = split(/\s/, $gene_header);
 		my ($root_id, $m_number) = split(/\|/, $m_id);
 		$gene = "$root_id" . "_" . "$m_number";
+	}elsif ($species eq "Castor_canadensis.brent.proteins") {
+		my ($scaffold, $type, $coords) = split(/\s/, $gene_header);
+		$gene = $scaffold;
+	}elsif ($species eq "Castor_canadensis.brent.transcripts") {
+		my ($scaffold, $type, $coords) = split(/\s/, $gene_header);
+		$gene = $scaffold;
 	}elsif ($species eq "Cavia_porcellus") {
 		my ($isoform, $type, $scaffold, $temp_gene, $transcript, $gene_biotype, $transcript_biotype, $gene_symbol, $description) = split(/\s/, $gene_header);
 		$gene = $isoform;