From: preecej <preecej@localhost>
Date: Wed, 5 Mar 2014 00:25:08 +0000 (+0000)
Subject: svn path=/; revision=530
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=4049caaa063aed32bbc79d08f7b912a064bea467;p=old-jaiswallab-svn%2F.git

svn path=/; revision=530
---

diff --git a/Personnel/preecej/perl_singletons/reactome_chebi_mapping/reactome_chebi_mapping.pl b/Personnel/preecej/perl_singletons/reactome_chebi_mapping/reactome_chebi_mapping.pl
index 81a260c..696e95c 100755
--- a/Personnel/preecej/perl_singletons/reactome_chebi_mapping/reactome_chebi_mapping.pl
+++ b/Personnel/preecej/perl_singletons/reactome_chebi_mapping/reactome_chebi_mapping.pl
@@ -53,7 +53,7 @@ my $sorted_no_match_file = "1.2_reactome_entries_with_no_chebi_match.txt";
 # options
 my $allow_obsolete_terms = 1;
 my $allow_cyc = 0;
-my $allow_synonyms = 0;
+my $allow_synonyms = 1;
 
 my $ont; # chebi ontology
 
diff --git a/Personnel/preecej/python_singletons/map_os_2_at.py b/Personnel/preecej/python_singletons/map_os_2_at.py
new file mode 100755
index 0000000..931db6e
--- /dev/null
+++ b/Personnel/preecej/python_singletons/map_os_2_at.py
@@ -0,0 +1,12 @@
+#!/bin/python
+
+# open the ensemble plants and rap::irgsp mapping files and generate a 2-col mapping of AT to LOC loci
+
+path = "/home/preecej/Documents/projects/plant_reactome/plant_reactome_site/projection/rice_to_arabidopsis/"
+
+ENS_FILE = open(path + "ensemble_plants_40_ath_to_rice_IRGSP.tab")
+RAP_IRGSP_FILE = open(path + "loc_rap_mappings.txt")
+
+for line in ENS_FILE:
+    print line
+