From: preecej <preecej@localhost>
Date: Fri, 15 Jul 2011 18:11:15 +0000 (+0000)
Subject: Modified queries to provide more fields from the AmiGO db.
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=4709c3b777f086210ee1fddf102aa09d15bd37dd;p=old-jaiswallab-svn%2F.git

Modified queries to provide more fields from the AmiGO db.

svn path=/; revision=120
---

diff --git a/preecej/semantic_wiki/prototyping/TermSearch_JSON.php b/preecej/semantic_wiki/prototyping/TermSearch_JSON.php
index acf7668..ab57a6a 100644
--- a/preecej/semantic_wiki/prototyping/TermSearch_JSON.php
+++ b/preecej/semantic_wiki/prototyping/TermSearch_JSON.php
@@ -22,23 +22,23 @@ if(isset($_GET['user']) && ($_GET['user']) == 'paw') {
             ? strtolower($_GET['qval'])
             : die('Please provide a searchable value');
 
-        // optional, for type 'lookup'
-        if ($type == 'lookup' && isset($_GET['ret_field']) && in_array($_GET['ret_field'],$arr_field_names)) {
-           $ret_field = $_GET['ret_field'];
-        }
-        
         $format = strtolower($_GET['format']) != 'json' 
             ? strtolower($_GET['format']) 
             : 'json'; //json is the default
         
         /* connect to the db */
-        $link = mysql_connect('floret.cgrb.oregonstate.edu', 'po-read-user', 'po-read-user_pw') or die('Cannot connect to the DB');
-        mysql_select_db('po_beta',$link) or die('Cannot select the DB');
+        $link = mysql_connect($_SERVER['mysql_host'], $_SERVER['mysql_user'], $_SERVER['mysql_pw']) or die('Cannot connect to the DB');
+        mysql_select_db($_SERVER['mysql_db'],$link) or die('Cannot select the DB');
 
         switch ($type) {
             case 'autocomplete':
                 /* grab the terms from the db */
-                $query = "select $field from term where $field like '%$qval%' ORDER BY name LIMIT $number_of_terms";
+                $query = "SELECT t.$field FROM term t"
+                    . " LEFT JOIN term_definition d ON d.term_id = t.id"
+                    . " WHERE t.$field LIKE '%$qval%'"
+                    . " AND UCASE(t.name) NOT LIKE 'OBSOLETE%'"
+                    . " AND UCASE(d.term_definition) NOT LIKE 'OBSOLETE%'"
+                    . " ORDER BY name LIMIT $number_of_terms";
                 $result = mysql_query($query,$link) or die('Errant query:  '.$query);
             
                 /* create one master array of the records */
@@ -59,23 +59,33 @@ if(isset($_GET['user']) && ($_GET['user']) == 'paw') {
                 }
                 break;
 
-            case 'lookup':
-                /* grab the terms from the db */
-                $query = "select distinct $ret_field from term where $field = '$qval' ORDER BY name LIMIT 1";
+            case 'term_detail':
+                /* grab the ontology data from the db */
+                $query = "SELECT DISTINCT t.acc as 'acc', t.term_type as 'type', d.term_definition as 'definition', d.term_comment as 'comment'"
+                    . " FROM term t"
+                    . " LEFT JOIN term_definition d ON d.term_id = t.id"
+                    . " WHERE t.name = '$qval'"
+                    . " AND t.term_type in ('plant_anatomy','plant_growth_and_development_stage')"
+                    . " AND UCASE(t.name) NOT LIKE 'OBSOLETE%'"
+                    . " AND UCASE(d.term_definition) NOT LIKE 'OBSOLETE%'"
+                    . " ORDER BY t.name LIMIT 1";
                 $result = mysql_query($query,$link) or die('Errant query:  '.$query);
             
                 /* create one master array of the records */
                 $terms = array();
                 if(mysql_num_rows($result)) {
                     while($term = mysql_fetch_assoc($result)) {
-                        $terms[] = array('title'=>$term[$ret_field]);
+                        $terms[] = array(
+                            'id'=>$term['acc'],
+                            'aspect'=>$term['type'] == "plant_anatomy" ? "Plant Anatomy" : "Plant Growth and Development Stage",
+                            'definition'=>$term['definition'],
+                            'comment'=>$term['comment']);
                     }
                 }
-                // TODO: change this to the necessary output for #get_web_data wiki call 
                 /* output in necessary format */
                 if($format == 'json') {
                     header('Content-type: application/json');
-                    echo json_encode(array('sfautocomplete'=>$terms));
+                    echo json_encode(array('PO_result'=>$terms));
                 }
                 else {
                     die('Sorry, this request cannot be fulfilled in '.$format.' format.');