From: preecej <preecej@localhost>
Date: Fri, 28 Mar 2014 00:48:01 +0000 (+0000)
Subject: wip: generate_reactome_files option
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=49eaa389920e8e7c9fd47483921124eec0f49368;p=old-jaiswallab-svn%2F.git

wip: generate_reactome_files option

svn path=/; revision=563
---

diff --git a/Personnel/preecej/python_singletons/incomparanoid.py b/Personnel/preecej/python_singletons/incomparanoid.py
index a298804..15aca22 100755
--- a/Personnel/preecej/python_singletons/incomparanoid.py
+++ b/Personnel/preecej/python_singletons/incomparanoid.py
@@ -295,6 +295,7 @@ parser.add_argument('-p', '--projection_prefix', help='add a platform-specific p
 parser.add_argument('-c', '--comparison_file_path', help='output file containing statistical comparisons')
 parser.add_argument('-E', '--ensembl_output_path', help='output file containing flat (1-to-many) ensemble ortho pairs')
 parser.add_argument('-I', '--inparanoid_output_path', help='output file containing flat (1-to-many) inparanoid ortho pairs')
+parser.add_argument('-g', '--generate_reactome_files', help='produce ortho_pair files required by Reactome projection inference script', action="store_true")
 
 args = parser.parse_args()
 #print args