From: cooperl09 Date: Mon, 5 May 2025 21:16:43 +0000 (-0700) Subject: Fixing typo in Oryza gene name X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=4fbef262e72dca2bfce1860e1dffc412cddc1b15;p=associations%2F.git Fixing typo in Oryza gene name Error is coming from Gramene page --- diff --git a/go-associations/go_gene_Oryza_Gramene.assoc b/go-associations/go_gene_Oryza_Gramene.assoc index 03b6f14..837ce3b 100644 --- a/go-associations/go_gene_Oryza_Gramene.assoc +++ b/go-associations/go_gene_Oryza_Gramene.assoc @@ -7795,17 +7795,17 @@ GR_gene GR:0080032 Glb GO:0004867 GR_REF:0 IMP F gene encoding alpha-globulin GR_gene GR:0080032 Glb GO:0016023 GR_REF:0 IMP C gene encoding alpha-globulin LOC_Os05g41970 gene taxon:4530 20130731 Gramene GR_gene GR:0080032 Glb GO:0032940 GR_REF:0 IMP P gene encoding alpha-globulin LOC_Os05g41970 gene taxon:4530 20130731 Gramene GR_gene GR:0080032 Glb GO:0045735 GR_REF:0 IMP F gene encoding alpha-globulin LOC_Os05g41970 gene taxon:4530 20130731 Gramene -GR_gene GR:0080033 SODCC1 GO:0000303 GR_REF:0 IMP P Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene -GR_gene GR:0080033 SODCC1 GO:0004784 GR_REF:0 IMP F Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene -GR_gene GR:0080033 SODCC1 GO:0005507 GR_REF:0 IMP F Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene -GR_gene GR:0080033 SODCC1 GO:0005737 GR_REF:0 IMP C Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene -GR_gene GR:0080033 SODCC1 GO:0005829 GR_REF:0 IMP C Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene -GR_gene GR:0080033 SODCC1 GO:0006801 GR_REF:0 IMP P Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene -GR_gene GR:0080033 SODCC1 GO:0008270 GR_REF:0 IMP F Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene -GR_gene GR:0080033 SODCC1 GO:0016209 GR_REF:0 IMP F Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene -GR_gene GR:0080033 SODCC1 GO:0016491 GR_REF:0 IMP F Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene -GR_gene GR:0080033 SODCC1 GO:0046872 GR_REF:0 IMP F Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene -!GR_gene GR:0080033 SODCC1 GO:0055114 GR_REF:0 IMP P Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene +GR_gene GR:0080033 SODCC1 GO:0000303 GR_REF:0 IMP P Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene +GR_gene GR:0080033 SODCC1 GO:0004784 GR_REF:0 IMP F Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene +GR_gene GR:0080033 SODCC1 GO:0005507 GR_REF:0 IMP F Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene +GR_gene GR:0080033 SODCC1 GO:0005737 GR_REF:0 IMP C Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene +GR_gene GR:0080033 SODCC1 GO:0005829 GR_REF:0 IMP C Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene +GR_gene GR:0080033 SODCC1 GO:0006801 GR_REF:0 IMP P Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene +GR_gene GR:0080033 SODCC1 GO:0008270 GR_REF:0 IMP F Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene +GR_gene GR:0080033 SODCC1 GO:0016209 GR_REF:0 IMP F Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene +GR_gene GR:0080033 SODCC1 GO:0016491 GR_REF:0 IMP F Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene +GR_gene GR:0080033 SODCC1 GO:0046872 GR_REF:0 IMP F Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene +!GR_gene GR:0080033 SODCC1 GO:0055114 GR_REF:0 IMP P Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20130731 Gramene GR_gene GR:0101190 Gc GO:0015979 GR_REF:0 IMP P Chlorophyll content Green color|Green colour gene taxon:4530 20130731 Gramene GR_gene GR:0101191 osa-MIR806a GO:0016442 GR_REF:0 IMP C micro RNA 806a miR561 gene taxon:4530 20130731 Gramene GR_gene GR:0101191 osa-MIR806a GO:0016442 GR_REF:0 IMP C micro RNA 806a miR561 gene taxon:4530 20130731 Gramene diff --git a/po-associations/po_anatomy_gene_oryza_gramene.assoc b/po-associations/po_anatomy_gene_oryza_gramene.assoc index 215eb16..2c010c7 100644 --- a/po-associations/po_anatomy_gene_oryza_gramene.assoc +++ b/po-associations/po_anatomy_gene_oryza_gramene.assoc @@ -1991,10 +1991,10 @@ GR_gene GR:0080030 CPT1 PO:0020039 GR_ref:6145 IC P49083 A Coleoptile phototrop GR_gene GR:0080031 SPK PO:0009010 GR_ref:3789|PMID:7724677 IC P28756 A seed-specific protein kinase gene taxon:4530 20090923 Gramene|PO:cooperl GR_gene GR:0080031 SPK PO:0009089 GR_ref:3083|PMID:8666249 IC P29835 A seed-specific protein kinase gene taxon:4530 20090923 Gramene|PO:cooperl GR_gene GR:0080032 Glb PO:0009089 GR_ref:25470|PMID:15821022 IC Q69T99 A gene encoding alpha-globulin gene taxon:4530 20090923 Gramene|PO:cooperl -GR_gene GR:0080033 SODCC1 PO:0005005 GR_ref:5560 TAS A Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA gene taxon:4530 20090923 Gramene|PO:cooperl -GR_gene GR:0080033 SODCC1 PO:0009005 GR_ref:6847|PMID:11978873 IC Q8S922 A Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA gene taxon:4530 20090923 Gramene|PO:cooperl -GR_gene GR:0080033 SODCC1 PO:0009010 GR_ref:11619|PMID:17562286 IC Q7XTE8 A Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA gene taxon:4530 20090923 Gramene|PO:cooperl -GR_gene GR:0080033 SODCC1 PO:0009025 GR_ref:41|PMID:11244106 IC Q9AVE6 A Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA gene taxon:4530 20090923 Gramene|PO:cooperl +GR_gene GR:0080033 SODCC1 PO:0005005 GR_ref:5560 TAS A Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA gene taxon:4530 20090923 Gramene|PO:cooperl +GR_gene GR:0080033 SODCC1 PO:0009005 GR_ref:6847|PMID:11978873 IC Q8S922 A Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA gene taxon:4530 20090923 Gramene|PO:cooperl +GR_gene GR:0080033 SODCC1 PO:0009010 GR_ref:11619|PMID:17562286 IC Q7XTE8 A Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA gene taxon:4530 20090923 Gramene|PO:cooperl +GR_gene GR:0080033 SODCC1 PO:0009025 GR_ref:41|PMID:11244106 IC Q9AVE6 A Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA gene taxon:4530 20090923 Gramene|PO:cooperl GR_gene GR:0080034 CIN1 PO:0009030 GR_ref:11503|PMID:17144896 IC Q8H443 A Cell wall invertase 1 OsCIN1 gene taxon:4530 20090923 Gramene|PO:cooperl GR_gene GR:0080034 CIN1 PO:0020003 GR_ref:2512|PMID:10528264 IEP Q2QW53 A Cell wall invertase 1 OsCIN1 gene taxon:4530 20090923 Gramene|PO:cooperl GR_gene GR:0080034 CIN1 PO:0020020 GR_ref:10120 IEP Q8RZV7 A Cell wall invertase 1 OsCIN1 gene taxon:4530 20090923 Gramene|PO:cooperl diff --git a/po-associations/po_growth_gene_oryza_gramene.assoc b/po-associations/po_growth_gene_oryza_gramene.assoc index e00351e..081ca63 100644 --- a/po-associations/po_growth_gene_oryza_gramene.assoc +++ b/po-associations/po_growth_gene_oryza_gramene.assoc @@ -2978,7 +2978,7 @@ GR_gene GR:0080030 CPT1 PO:0007049 GR_ref:11489|PMID:15598797 IC Q5KS50 G Coleo GR_gene GR:0080030 CPT1 PO:0007520 GR_ref:11489|PMID:15598797 IC Q5KS50 G Coleoptile phototropism1 NPH3-like gene taxon:4530 20090923 Gramene GR_gene GR:0080031 SPK PO:0007632 GR_ref:6603|PMID:11910009 IC P53682 G seed-specific protein kinase gene taxon:4530 20090923 Gramene GR_gene GR:0080032 Glb PO:0004506 GR_ref:3083|PMID:8666249 IC P29835 G gene encoding alpha-globulin gene taxon:4530 20090923 Gramene -GR_gene GR:0080033 SODCC1 PO:0004506 GR_ref:3789|PMID:7724677 IC P28756 G Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA gene taxon:4530 20090923 Gramene +GR_gene GR:0080033 SODCC1 PO:0004506 GR_ref:3789|PMID:7724677 IC P28756 G Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA gene taxon:4530 20090923 Gramene GR_gene GR:0080037 Lsi2 PO:0001002 GR_ref:11633|PMID:17625566 TAS G low silicon 2 SIET1|silicon efflux transporter gene taxon:4530 20090923 Gramene GR_gene GR:0080038 TAC1 PO:0007073 GR_ref:11662|PMID:17908158 IMP Q66V57 G Tiller Angle Control 1 gene taxon:4530 20090923 Gramene GR_gene GR:0101290 NYC1 PO:0001052 GR_ref:11547|PMID:17416733 IEP Q5N800 G Non-Yellow Coloring 1 Non-Yellow Coloring1 gene taxon:4530 20090923 Gramene diff --git a/to-associations/to_gene_Oryza_Gramene.assoc b/to-associations/to_gene_Oryza_Gramene.assoc index b3a3681..3059713 100644 --- a/to-associations/to_gene_Oryza_Gramene.assoc +++ b/to-associations/to_gene_Oryza_Gramene.assoc @@ -1890,7 +1890,7 @@ GR_gene GR:0080031 SPK TO:0000696 GR_REF:6603 IMP T seed-specific protein kina GR_gene GR:0080031 SPK TO:0000718 GR_REF:6603 IMP T seed-specific protein kinase LOC_Os10g38420 gene taxon:4530 20121108 Gramene GR_gene GR:0080031 SPK TO:0002653 GR_REF:6603 IMP T seed-specific protein kinase LOC_Os10g38420 gene taxon:4530 20121108 Gramene GR_gene GR:0080031 SPK TO:0002658 GR_REF:6603 IMP T seed-specific protein kinase LOC_Os10g38420 gene taxon:4530 20121108 Gramene -GR_gene GR:0080033 SODCC1 TO:0002657 GR_REF:3789 IMP T Cytosolic Cu/Zn-siperoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20121108 Gramene +GR_gene GR:0080033 SODCC1 TO:0002657 GR_REF:3789 IMP T Cytosolic Cu/Zn-superoxide dismutase rice Cu/Zn-SOD|sodA|SODCC.1|RSODA|LOC_Os03g22810 gene taxon:4530 20121108 Gramene GR_gene GR:0101190 Gc TO:0000295 GR_REF:11511 IMP T Chlorophyll content Green color|Green colour gene taxon:4530 20121108 Gramene GR_gene GR:0101190 Gc TO:0000316 GR_REF:11511 IMP T Chlorophyll content Green color|Green colour gene taxon:4530 20121108 Gramene GR_gene GR:0101190 Gc TO:0000327 GR_REF:11511 IMP T Chlorophyll content Green color|Green colour gene taxon:4530 20121108 Gramene