From: preecej <preecej@localhost>
Date: Wed, 2 Apr 2014 20:40:17 +0000 (+0000)
Subject: now generates optional reactome projection output files
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=50544f60732b1ec9958e65527ae84da418034546;p=old-jaiswallab-svn%2F.git

now generates optional reactome projection output files

svn path=/; revision=567
---

diff --git a/Personnel/preecej/python_singletons/incomparanoid.py b/Personnel/preecej/python_singletons/incomparanoid.py
index 18576a6..256b40d 100755
--- a/Personnel/preecej/python_singletons/incomparanoid.py
+++ b/Personnel/preecej/python_singletons/incomparanoid.py
@@ -286,7 +286,7 @@ def write_reactome_files(dict_map, reactome_gene_protein_path, reactome_projecti
     REACTOME_GENE_PROTEIN_OUT_FILE = open(reactome_gene_protein_path,'w')
     REACTOME_PROJECTION_OUT_FILE = open(reactome_projection_path,'w')
     for k, v_list in sorted(dict_map.iteritems()) :
-        REACTOME_PROJECTION_OUT_FILE.write(k + "\t" + " ".join(v_list) + "\n")
+        REACTOME_PROJECTION_OUT_FILE.write(k + "\t" + " ".join(map(lambda x: x.replace(x, (projection_prefix if projection_prefix else "") + x), v_list)) + "\n")
         for v in v_list :
             if v not in val_set :
                 val_set.add(v)