From: preecej <preecej@localhost>
Date: Sat, 8 Mar 2014 01:29:10 +0000 (+0000)
Subject: mods for projected species flexibility
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=5ebfe57765241376ee0ac5b9c20b3af14dc940eb;p=old-jaiswallab-svn%2F.git

mods for projected species flexibility

svn path=/; revision=535
---

diff --git a/Personnel/preecej/python_singletons/map_os_2_at.py b/Personnel/preecej/python_singletons/map_os_2_at.py
index b784e8e..1f101cf 100755
--- a/Personnel/preecej/python_singletons/map_os_2_at.py
+++ b/Personnel/preecej/python_singletons/map_os_2_at.py
@@ -103,7 +103,7 @@ def inp_map(input_file, output_file) :
     for line in INP :
         cols = line.rstrip().split()
         os_locus = cols[1].rstrip(".1")
-        prj_locus = cols[2].rstrip(".1")
+        prj_locus = cols[2].rsplit("_",1)[0].rsplit(".",1)[0] # remove any isoform suffixes
         if os_locus in dict_inp_ids.keys() :
             dict_inp_ids[os_locus].append(prj_locus)
         else :