From: cooperl Date: Thu, 31 Dec 2015 01:12:43 +0000 (+0000) Subject: -commented out lines with missing data. X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=60d70e55b43a82f060fe185f37579877012ed9bd;p=associations%2F.git -commented out lines with missing data. svn path=/; revision=617 --- diff --git a/to-associations/Test_PPPP_TO/TO_IMP_gene_M.truncatula.assoc b/to-associations/Test_PPPP_TO/TO_IMP_gene_M.truncatula.assoc index 7a21e9c..54af922 100644 --- a/to-associations/Test_PPPP_TO/TO_IMP_gene_M.truncatula.assoc +++ b/to-associations/Test_PPPP_TO/TO_IMP_gene_M.truncatula.assoc @@ -3,16 +3,16 @@ LIS ABE72958.1 CPK3 root nodule number TO:0000900 25774204 IMP T ABE72958.1 Inc LIS ADC33495.1 VPY 25774204 IMP ADC33495.1 Aborted mycorrhizae formation gene taxon:3880 20150706 Ethan Johnson LIS ADC33495.1 VPY 25774204 IMP ADC33495.1 Rhizobial Infection thread abnormal gene taxon:3880 20150706 Ethan Johnson LIS ADC33495.1 VPY root nodule number TO:0000900 25774204 IMP T ADC33495.1 root nodulation decreased gene taxon:3880 20150706 Ethan Johnson -LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 Ovules exposed by unfused carpel edges gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 abnomal ovules gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 either sepal-like or petal-like structures gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 fewer ovules gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 fused whorl of stamens and petals gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 seed pods absent gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 small carpel gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 small flowers gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 stigma sometimes absent gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 style sometimes absent gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 Ovules exposed by unfused carpel edges gene taxon:3880 20150702 Ethan Johnson +!!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 abnomal ovules gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 either sepal-like or petal-like structures gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 fewer ovules gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 fused whorl of stamens and petals gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 seed pods absent gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 small carpel gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 small flowers gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 stigma sometimes absent gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 style sometimes absent gene taxon:3880 20150702 Ethan Johnson LIS AFI56799.1 NAM carpel anatomy and morphology trait TO:0006012 25774204 IMP T AFI56799.1 abnormal carpel gene taxon:3880 20150702 Ethan Johnson LIS AFI56799.1 NAM cotyledon anatomy and morphology trait TO:0000749 25774204 IMP T AFI56799.1 fused cotyledons gene taxon:3880 20150702 Ethan Johnson LIS AFI56799.1 NAM embryo shape TO:0000193 25774204 IMP T AFI56799.1 cylindrical embryos gene taxon:3880 20150702 Ethan Johnson @@ -24,97 +24,97 @@ LIS AFI56799.1 NAM trichome anatomy and morphology trait TO:0000911 25774204 IMP LIS AFI56799.1 NAM vascular leaf anatomy and morphology trait TO:0000419 25774204 IMP T AFI56799.1 fused leaflets gene taxon:3880 20150702 Ethan Johnson LIS AFI56799.1 NAM vascular leaf anatomy and morphology trait TO:0000419 25774204 IMP T AFI56799.1 malformed juvenile vascular leaves gene taxon:3880 20150702 Ethan Johnson LIS CAD48198.1 ENOD40 tissue development trait TO:0006015 25774204 IMP T CAD48198.1 Abnormal tissue development gene taxon:3880 20150706 Ethan Johnson -LIS CAI29046.1 MtAOC 25774204 IMP CAI29046.1 Arbuscle formation decreased gene taxon:3880 20150706 Ethan Johnson -LIS CAI29046.1 MtAOC 25774204 IMP CAI29046.1 Arbuscle structure normal gene taxon:3880 20150706 Ethan Johnson -LIS CAI29046.1 MtAOC 25774204 IMP CAI29046.1 Reduced root Jasmonic Acid levels gene taxon:3880 20150706 Ethan Johnson -LIS CAI29046.1 MtAOC 25774204 IMP CAI29046.1 mycorrhizae delayed colonization gene taxon:3880 20150706 Ethan Johnson -LIS CAR57918.1 MtCCD1 25774204 IMP CAR57918.1 Degenerate arbuscles gene taxon:3880 20150706 Ethan Johnson +!LIS CAI29046.1 MtAOC 25774204 IMP CAI29046.1 Arbuscle formation decreased gene taxon:3880 20150706 Ethan Johnson +!LIS CAI29046.1 MtAOC 25774204 IMP CAI29046.1 Arbuscle structure normal gene taxon:3880 20150706 Ethan Johnson +!LIS CAI29046.1 MtAOC 25774204 IMP CAI29046.1 Reduced root Jasmonic Acid levels gene taxon:3880 20150706 Ethan Johnson +!LIS CAI29046.1 MtAOC 25774204 IMP CAI29046.1 mycorrhizae delayed colonization gene taxon:3880 20150706 Ethan Johnson +!LIS CAR57918.1 MtCCD1 25774204 IMP CAR57918.1 Degenerate arbuscles gene taxon:3880 20150706 Ethan Johnson LIS CAR57918.1 MtCCD1 carotene content TO:0000289 25774204 IMP T CAR57918.1 Apocarotenoid levels abnormal in roots gene taxon:3880 20150706 Ethan Johnson -LIS Medtr1g056530 HAP2.1 25774204 IMP Medtr1g056530 nonfunctional root nodules gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr1g056530 HAP2.1 25774204 IMP Medtr1g056530 nonfunctional root nodules gene taxon:3880 20150706 Ethan Johnson LIS Medtr1g056530 HAP2.1 root nodule anatomy and morphology trait TO:0000898 25774204 IMP T Medtr1g056530 small root nodules gene taxon:3880 20150706 Ethan Johnson -LIS Medtr1g090320 LIN 25774204 IMP Medtr1g090320 aborted infection threads gene taxon:3880 20150702 Ethan Johnson -LIS Medtr1g090320 LIN 25774204 IMP Medtr1g090320 decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson -LIS Medtr1g090320 LIN 25774204 IMP Medtr1g090320 nodule development arrested gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr1g090320 LIN 25774204 IMP Medtr1g090320 aborted infection threads gene taxon:3880 20150702 Ethan Johnson! +!LIS Medtr1g090320 LIN 25774204 IMP Medtr1g090320 decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr1g090320 LIN 25774204 IMP Medtr1g090320 nodule development arrested gene taxon:3880 20150702 Ethan Johnson LIS Medtr1g101600 CBF4 root length TO:0000227 25774204 IMP T Medtr1g101600 Higher Primary root length gene taxon:3880 20150706 Ethan Johnson LIS Medtr1g101600 CBF4 salt tolerance TO:0006001 25774204 IMP T Medtr1g101600 Salt-stress tolerance increased gene taxon:3880 20150706 Ethan Johnson -LIS Medtr2g005870 DMI1 25774204 IMP Medtr2g005870 Infection thread aborted gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr2g005870 DMI1 25774204 IMP Medtr2g005870 Infection thread aborted gene taxon:3880 20150702 Ethan Johnson LIS Medtr2g005870 DMI1 root nodule number TO:0000900 25774204 IMP T Medtr2g005870 root nodules absent gene taxon:3880 20150702 Ethan Johnson -LIS Medtr2g035020 GT3 (UGT73F3) 25774204 IMP Medtr2g035020 Increased isoflavones in roots gene taxon:3880 20150706 Ethan Johnson -LIS Medtr2g035020 GT3 (UGT73F3) 25774204 IMP Medtr2g035020 Reduced saponins in roots gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr2g035020 GT3 (UGT73F3) 25774204 IMP Medtr2g035020 Increased isoflavones in roots gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr2g035020 GT3 (UGT73F3) 25774204 IMP Medtr2g035020 Reduced saponins in roots gene taxon:3880 20150706 Ethan Johnson LIS Medtr2g035020 GT3 (UGT73F3) germination rate TO:0000430 25774204 IMP T Medtr2g035020 Seed germination delayed gene taxon:3880 20150706 Ethan Johnson LIS Medtr2g035020 GT3 (UGT73F3) plant structure growth and development trait TO:0000928 25774204 IMP T Medtr2g035020 Plant growth stunted gene taxon:3880 20150706 Ethan Johnson LIS Medtr2g035020 GT3 (UGT73F3) root branching TO:0000257 25774204 IMP T Medtr2g035020 Roots less branched gene taxon:3880 20150706 Ethan Johnson LIS Medtr2g035020 GT3 (UGT73F3) root length TO:0000227 25774204 IMP T Medtr2g035020 Roots short gene taxon:3880 20150706 Ethan Johnson -LIS Medtr3g021350 cyp716A12 25774204 IMP Medtr3g021350 Impaired hemolytic saponin synthesis gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr3g021350 cyp716A12 25774204 IMP Medtr3g021350 Impaired hemolytic saponin synthesis gene taxon:3880 20150706 Ethan Johnson LIS Medtr3g021350 cyp716A12 plant structure growth and development trait TO:0000928 25774204 IMP T Medtr3g021350 Plant growth stunted gene taxon:3880 20150706 Ethan Johnson LIS Medtr3g098560 SGL1 flower anatomy and morphology trait TO:0000499 25774204 IMP T Medtr3g098560 fused flowers gene taxon:3880 20150706 Ethan Johnson LIS Medtr3g098560 SGL1 leaf shape TO:0000492 25774204 IMP T Medtr3g098560 simple, unifoliate (not compound) leaves gene taxon:3880 20150706 Ethan Johnson -LIS Medtr3g098560 SGL1 petiole length TO:0000766 25774204 IMP T Medtr3g098560 Short petiole gene taxon:3880 20150706 Ethan Johnson -LIS Medtr3g099620 bHLH1 25774204 IMP Medtr3g099620 Nodulation delayed gene taxon:3880 20150706 Ethan Johnson +LIS Medtr3g098560 SGL1 petiole length TO:0000766 25774204 IMP T Medtr3g098560 Short petiole gene taxon:3880 20150706 Ethan Johnson! +!LIS Medtr3g099620 bHLH1 25774204 IMP Medtr3g099620 Nodulation delayed gene taxon:3880 20150706 Ethan Johnson LIS Medtr3g099620 bHLH1 plant organ growth and development trait TO:0000927 25774204 IMP T Medtr3g099620 reduced growth of aboveground plant organs gene taxon:3880 20150706 Ethan Johnson LIS Medtr3g099620 bHLH1 vascular bundle development trait TO:0020109 25774204 IMP T Medtr3g099620 Assymetrical development of nodule vascular bundles gene taxon:3880 20150706 Ethan Johnson -LIS Medtr3g106420 FLOT2 25774204 IMP Medtr3g106420 A decrease in plants that form pink nodules gene taxon:3880 20150702 Ethan Johnson -LIS Medtr3g106420 FLOT2 25774204 IMP Medtr3g106420 Decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson -LIS Medtr3g106420 FLOT2 25774204 IMP Medtr3g106420 reduced acetylene reduction gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr3g106420 FLOT2 25774204 IMP Medtr3g106420 A decrease in plants that form pink nodules gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr3g106420 FLOT2 25774204 IMP Medtr3g106420 Decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr3g106420 FLOT2 25774204 IMP Medtr3g106420 reduced acetylene reduction gene taxon:3880 20150702 Ethan Johnson LIS Medtr3g106420 FLOT2 lateral root length TO:0001012 25774204 IMP T Medtr3g106420 Long primary lateral roots gene taxon:3880 20150702 Ethan Johnson LIS Medtr3g106420 FLOT2 root nodule number 25774204 IMP Medtr3g106420 More no-nodule plants gene taxon:3880 20150702 Ethan Johnson LIS Medtr3g106420 FLOT2 root nodule number TO:0000900 25774204 IMP T Medtr3g106420 Fewer nodules per plant gene taxon:3880 20150702 Ethan Johnson LIS Medtr3g106420 FLOT2 seminal root length TO:0000586 25774204 IMP T Medtr3g106420 Decreased primary root length gene taxon:3880 20150702 Ethan Johnson -LIS Medtr3g106430 FLOT4 25774204 IMP Medtr3g106430 A decrease in plants that form pink nodules gene taxon:3880 20150702 Ethan Johnson -LIS Medtr3g106430 FLOT4 25774204 IMP Medtr3g106430 aborted infection threads gene taxon:3880 20150702 Ethan Johnson -LIS Medtr3g106430 FLOT4 25774204 IMP Medtr3g106430 decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson -LIS Medtr3g106430 FLOT4 25774204 IMP Medtr3g106430 reduced acetylene reduction gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr3g106430 FLOT4 25774204 IMP Medtr3g106430 A decrease in plants that form pink nodules gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr3g106430 FLOT4 25774204 IMP Medtr3g106430 aborted infection threads gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr3g106430 FLOT4 25774204 IMP Medtr3g106430 decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr3g106430 FLOT4 25774204 IMP Medtr3g106430 reduced acetylene reduction gene taxon:3880 20150702 Ethan Johnson LIS Medtr3g106430 FLOT4 root nodule number TO:0000900 25774204 IMP T Medtr3g106430 Fewer nodules per plant gene taxon:3880 20150702 Ethan Johnson LIS Medtr3g106430 FLOT4 root number TO:0000084 25774204 IMP T Medtr3g106430 Increased secondary roots gene taxon:3880 20150702 Ethan Johnson LIS Medtr3g106480 FLOT3 root length TO:0000227 25774204 IMP T Medtr3g106480 Decreased root length gene taxon:3880 20150702 Ethan Johnson LIS Medtr3g106480 FLOT3 root weight TO:0000279 25774204 IMP T Medtr3g106480 Reduced root weight gene taxon:3880 20150702 Ethan Johnson -LIS Medtr4g070970 SUNN 25774204 IMP Medtr4g070970 Wild type nodulation response to ethylene gene taxon:3880 20150702 Ethan Johnson -LIS Medtr4g070970 SUNN 25774204 IMP Medtr4g070970 nodulation occurs in abnormal places on root gene taxon:3880 20150702 Ethan Johnson -LIS Medtr4g070970 SUNN 25774204 IMP Medtr4g070970 nodulation under high nitrogen gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr4g070970 SUNN 25774204 IMP Medtr4g070970 Wild type nodulation response to ethylene gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr4g070970 SUNN 25774204 IMP Medtr4g070970 nodulation occurs in abnormal places on root gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr4g070970 SUNN 25774204 IMP Medtr4g070970 nodulation under high nitrogen gene taxon:3880 20150702 Ethan Johnson LIS Medtr4g070970 SUNN root length TO:0000227 25774204 IMP T Medtr4g070970 short roots gene taxon:3880 20150702 Ethan Johnson LIS Medtr4g070970 SUNN root nodule number TO:0000900 25774204 IMP T Medtr4g070970 increased number of root nodules gene taxon:3880 20150702 Ethan Johnson -LIS Medtr4g084140 MtNAP1 25774204 IMP Medtr4g084140 aborted infection threads gene taxon:3880 20150702 Ethan Johnson -LIS Medtr4g084140 MtNAP1 25774204 IMP Medtr4g084140 decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson -LIS Medtr4g084140 MtNAP1 25774204 IMP Medtr4g084140 reduced acetylene reduction gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr4g084140 MtNAP1 25774204 IMP Medtr4g084140 aborted infection threads gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr4g084140 MtNAP1 25774204 IMP Medtr4g084140 decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr4g084140 MtNAP1 25774204 IMP Medtr4g084140 reduced acetylene reduction gene taxon:3880 20150702 Ethan Johnson LIS Medtr4g084140 MtNAP1 enzyme activity trait TO:0000599 25774204 IMP T Medtr4g084140 low nitrogenase activity in nodules gene taxon:3880 20150702 Ethan Johnson LIS Medtr4g084140 MtNAP1 root nodule anatomy and morphology trait TO:0000898 25774204 IMP T Medtr4g084140 root nodules undeveloped and small gene taxon:3880 20150702 Ethan Johnson LIS Medtr4g084140 MtNAP1 root nodule number TO:0000900 25774204 IMP T Medtr4g084140 Fewer root nodules gene taxon:3880 20150702 Ethan Johnson -LIS Medtr5g011250 ANS 25774204 IMP Medtr5g011250 Reduced seed Oligomeric proanthocyanidin levels gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr5g011250 ANS 25774204 IMP Medtr5g011250 Reduced seed Oligomeric proanthocyanidin levels gene taxon:3880 20150706 Ethan Johnson LIS Medtr5g011250 ANS anthocyanin content TO:0000071 25774204 IMP T Medtr5g011250 Reduced leaf Anthocyanin levels gene taxon:3880 20150706 Ethan Johnson -LIS Medtr5g014400 PALM1 25774204 IMP Medtr5g014400 Distal lateral leaflets develop similarly to terminal leaflets gene taxon:3880 20150702 Ethan Johnson -LIS Medtr5g014400 PALM1 25774204 IMP Medtr5g014400 Rachis length decreased gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr5g014400 PALM1 25774204 IMP Medtr5g014400 Distal lateral leaflets develop similarly to terminal leaflets gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr5g014400 PALM1 25774204 IMP Medtr5g014400 Rachis length decreased gene taxon:3880 20150702 Ethan Johnson LIS Medtr5g014400 PALM1 leaf anatomy and morphology trait TO:0000748 25774204 IMP T Medtr5g014400 Forms dissected leaves gene taxon:3880 20150702 Ethan Johnson LIS Medtr5g014400 PALM1 leaf anatomy and morphology trait TO:0000748 25774204 IMP T Medtr5g014400 Palmate-like pentafoliate leaves gene taxon:3880 20150702 Ethan Johnson LIS Medtr5g014400 PALM1 petiole length TO:0000766 25774204 IMP T Medtr5g014400 Petiole length increased gene taxon:3880 20150702 Ethan Johnson -LIS Medtr5g019040 NFP 25774204 IMP Medtr5g019040 Infection thread aborted gene taxon:3880 20150706 Ethan Johnson -LIS Medtr5g019040 NFP 25774204 IMP Medtr5g019040 root nodules absent gene taxon:3880 20150706 Ethan Johnson -LIS Medtr5g022030 CDPK1 25774204 IMP Medtr5g022030 mycorrhizal symbioses decreased gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr5g019040 NFP 25774204 IMP Medtr5g019040 Infection thread aborted gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr5g019040 NFP 25774204 IMP Medtr5g019040 root nodules absent gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr5g022030 CDPK1 25774204 IMP Medtr5g022030 mycorrhizal symbioses decreased gene taxon:3880 20150702 Ethan Johnson LIS Medtr5g022030 CDPK1 root cortical cell length TO:0020108 25774204 IMP T Medtr5g022030 reduced root cell length gene taxon:3880 20150702 Ethan Johnson LIS Medtr5g022030 CDPK1 root hair length TO:0002665 25774204 IMP T Medtr5g022030 reduced root hair length gene taxon:3880 20150702 Ethan Johnson LIS Medtr5g022030 CDPK1 root nodule anatomy and morphology trait TO:0000898 25774204 IMP T Medtr5g022030 root nodulation decreased gene taxon:3880 20150702 Ethan Johnson -LIS Medtr5g026850 CYCLOPS 25774204 IMP Medtr5g026850 inhibited mycorrhizal infection gene taxon:3880 20150706 Ethan Johnson -LIS Medtr5g026850 CYCLOPS 25774204 IMP Medtr5g026850 inhibited rhizobial infection gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr5g026850 CYCLOPS 25774204 IMP Medtr5g026850 inhibited mycorrhizal infection gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr5g026850 CYCLOPS 25774204 IMP Medtr5g026850 inhibited rhizobial infection gene taxon:3880 20150706 Ethan Johnson LIS Medtr5g026850 CYCLOPS root nodule anatomy and morphology trait TO:0000898 25774204 IMP T Medtr5g026850 arrested nodule development gene taxon:3880 20150706 Ethan Johnson -LIS Medtr5g030920 nork 25774204 IMP Medtr5g030920 mycorrhizal symbioses absent gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr5g030920 nork 25774204 IMP Medtr5g030920 mycorrhizal symbioses absent gene taxon:3880 20150702 Ethan Johnson LIS Medtr5g030920 nork root nodule number TO:0000900 25774204 IMP T Medtr5g030920 Root nodules absent in presence of Nod factor gene taxon:3880 20150701 Ethan Johnson LIS Medtr5g030920 nork root nodule number TO:0000900 25774204 IMP T Medtr5g030920 Root nodules absent in presence of the rhizobial Sinorhizobium meliloti gene taxon:3880 20150701 Ethan Johnson -LIS Medtr5g086120 LYK4 25774204 IMP Medtr5g086120 Infection thread aborted gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr5g086120 LYK4 25774204 IMP Medtr5g086120 Infection thread aborted gene taxon:3880 20150702 Ethan Johnson LIS Medtr5g086120 LYK4 root nodule number TO:0000900 25774204 IMP T Medtr5g086120 root nodules absent gene taxon:3880 20150702 Ethan Johnson -LIS Medtr5g086130 LYK3 25774204 IMP Medtr5g086130 Infection thread aborted gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr5g086130 LYK3 25774204 IMP Medtr5g086130 Infection thread aborted gene taxon:3880 20150702 Ethan Johnson LIS Medtr5g086130 LYK3 root nodule number TO:0000900 25774204 IMP T Medtr5g086130 root nodules absent gene taxon:3880 20150702 Ethan Johnson -LIS Medtr6g071190 FCL1 25774204 IMP Medtr6g071190 Leaf rachis malformed gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr6g071190 FCL1 25774204 IMP Medtr6g071190 Leaf rachis malformed gene taxon:3880 20150702 Ethan Johnson LIS Medtr6g071190 FCL1 petiole length TO:0000766 25774204 IMP T Medtr6g071190 Short petiole gene taxon:3880 20150702 Ethan Johnson LIS Medtr6g071190 FCL1 vascular leaf anatomy and morphology trait TO:0000419 25774204 IMP T Medtr6g071190 Fused leaflets gene taxon:3880 20150702 Ethan Johnson LIS Medtr7g084970 FTa1 flowering time trait TO:0002616 25774204 IMP T Medtr7g084970 Delayed flowering gene taxon:3880 20150702 Ethan Johnson LIS Medtr7g085040 FTc flower development trait TO:0000622 25774204 IMP T Medtr7g085040 Flower development normal under long days gene taxon:3880 20150706 Ethan Johnson -LIS Medtr7g085810 ERN 25774204 IMP Medtr7g085810 Rhizobial colonization blocked gene taxon:3880 20150706 Ethan Johnson -LIS Medtr7g085810 ERN 25774204 IMP Medtr7g085810 Signal transduction for nodulation blocked gene taxon:3880 20150706 Ethan Johnson -LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 Reduced autocatylic ethylene production gene taxon:3880 20150706 Ethan Johnson -LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 Reduced inhibition of root growth in response to application of exogenous cytokinin benzyl adenine gene taxon:3880 20150706 Ethan Johnson -LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 increased mycorrhizal infections gene taxon:3880 20150706 Ethan Johnson -LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 increased pathogenic fungal damage gene taxon:3880 20150706 Ethan Johnson -LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 increased persistant rhizobia infection gene taxon:3880 20150702 Ethan Johnson -LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 radial swelling of primary infection zone gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr7g085810 ERN 25774204 IMP Medtr7g085810 Rhizobial colonization blocked gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr7g085810 ERN 25774204 IMP Medtr7g085810 Signal transduction for nodulation blocked gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 Reduced autocatylic ethylene production gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 Reduced inhibition of root growth in response to application of exogenous cytokinin benzyl adenine gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 increased mycorrhizal infections gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 increased pathogenic fungal damage gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 increased persistant rhizobia infection gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 radial swelling of primary infection zone gene taxon:3880 20150702 Ethan Johnson LIS Medtr7g101410 Skl1 gravity response trait TO:0002693 25774204 IMP T Medtr7g101410 No loss of geotropism gene taxon:3880 20150706 Ethan Johnson LIS Medtr7g101410 Skl1 hypocotyl anatomy and morphology trait TO:0000757 25774204 IMP T Medtr7g101410 lack of inhibition of hypocotyl growth gene taxon:3880 20150706 Ethan Johnson LIS Medtr7g101410 Skl1 hypocotyl anatomy and morphology trait TO:0000757 25774204 IMP T Medtr7g101410 reduced apical hook angle gene taxon:3880 20150706 Ethan Johnson @@ -122,17 +122,17 @@ LIS Medtr7g101410 Skl1 root development trait TO:0000656 25774204 IMP T Medtr7g LIS Medtr7g101410 Skl1 root hair length TO:0002665 25774204 IMP T Medtr7g101410 reduced ectopic root hairs gene taxon:3880 20150706 Ethan Johnson LIS Medtr7g101410 Skl1 root nodule number TO:0000900 25774204 IMP T Medtr7g101410 Absence of nodules gene taxon:3880 20150702 Ethan Johnson LIS Medtr7g101410 Skl1 seedling cotyledon size TO:0000752 25774204 IMP T Medtr7g101410 large cotyledons gene taxon:3880 20150702 Ethan Johnson -LIS Medtr8g020200 ELF4 25774204 IMP Medtr8g020200 Circadian rhythm abnormal gene taxon:3880 20150706 Ethan Johnson -LIS Medtr8g043970 DMI3 25774204 IMP Medtr8g043970 mycorrhizal symbioses absent gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr8g020200 ELF4 25774204 IMP Medtr8g020200 Circadian rhythm abnormal gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr8g043970 DMI3 25774204 IMP Medtr8g043970 mycorrhizal symbioses absent gene taxon:3880 20150702 Ethan Johnson LIS Medtr8g043970 DMI3 root nodule number TO:0000900 25774204 IMP T Medtr8g043970 root nodule absent gene taxon:3880 20150702 Ethan Johnson LIS Medtr8g058380 CDC16 auxin sensitivity TO:0000163 25774204 IMP T Medtr8g058380 Reduced auxin sensitivity by roots gene taxon:3880 20150706 Ethan Johnson LIS Medtr8g058380 CDC16 root nodule anatomy and morphology trait TO:0000898 25774204 IMP T Medtr8g058380 Increased nodules gene taxon:3880 20150706 Ethan Johnson -LIS Medtr8g058710 chitIII-3 25774204 IMP Medtr8g058710 Increased fungal spore germination gene taxon:3880 20150706 Ethan Johnson -LIS Medtr8g058710 chitIII-3 25774204 IMP Medtr8g058710 Increased fungal spore production gene taxon:3880 20150706 Ethan Johnson -LIS Medtr8g058710 chitIII-3 25774204 IMP Medtr8g058710 Increased mycorrhizal infections gene taxon:3880 20150706 Ethan Johnson -LIS Medtr8g106150 MtCre1 25774204 IMP Medtr8g106150 aborted infection threads gene taxon:3880 20150702 Ethan Johnson -LIS Medtr8g106150 MtCre1 25774204 IMP Medtr8g106150 arrested root nodule development gene taxon:3880 20150702 Ethan Johnson -LIS Medtr8g106150 MtCre1 25774204 IMP Medtr8g106150 cytokinin response gene not induced by cytokinins gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr8g058710 chitIII-3 25774204 IMP Medtr8g058710 Increased fungal spore germination gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr8g058710 chitIII-3 25774204 IMP Medtr8g058710 Increased fungal spore production gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr8g058710 chitIII-3 25774204 IMP Medtr8g058710 Increased mycorrhizal infections gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr8g106150 MtCre1 25774204 IMP Medtr8g106150 aborted infection threads gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr8g106150 MtCre1 25774204 IMP Medtr8g106150 arrested root nodule development gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr8g106150 MtCre1 25774204 IMP Medtr8g106150 cytokinin response gene not induced by cytokinins gene taxon:3880 20150702 Ethan Johnson LIS Medtr8g106150 MtCre1 cytokinin sensitivity TO:0000167 25774204 IMP T Medtr8g106150 root growth not inhibited by cytokinins gene taxon:3880 20150702 Ethan Johnson LIS Medtr8g106150 MtCre1 root nodule number TO:0000900 25774204 IMP T Medtr8g106150 Fewer root nodules gene taxon:3880 20150702 Ethan Johnson LIS Medtr8g106150 MtCre1 root number TO:0000084 25774204 IMP T Medtr8g106150 Increased secondary roots gene taxon:3880 20150702 Ethan Johnson diff --git a/to-associations/Test_PPPP_TO/TO_IMP_gene_S.lycopersicum.assoc b/to-associations/Test_PPPP_TO/TO_IMP_gene_S.lycopersicum.assoc index ccab1d2..1e9d828 100644 --- a/to-associations/Test_PPPP_TO/TO_IMP_gene_S.lycopersicum.assoc +++ b/to-associations/Test_PPPP_TO/TO_IMP_gene_S.lycopersicum.assoc @@ -2,66 +2,66 @@ SGN_gene 197 b beta-carotene content TO:0002695 IMP T Solyc06g074240 high fruit beta-carotene gene taxon:4081 20150710 Ethan Johnson SGN_gene 197 b lycopene content TO:0002699 IMP T Solyc06g074240 low fruit lycopene gene taxon:4081 20150713 Ethan Johnson SGN_gene 197 b lycopene content TO:0002699 IMP T Solyc06g074240 high fruit lycopene gene taxon:4081 20150713 Ethan Johnson -SGN_gene 197 b IMP Solyc06g074240 tawny-orange corolla gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 197 b IMP Solyc06g074240 tawny-orange corolla gene taxon:4081 20150713 Ethan Johnson SGN_gene 187 bsr4 bacterial disease resistance TO:0000315 IMP T Solyc05g007850 resistance to bacterial spot gene taxon:4081 20150713 Ethan Johnson -SGN_gene 187 bsr4 IMP Solyc05g007850 HR response against Xanthomonas campestris pv. vesicatoria gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 187 bsr4 IMP Solyc05g007850 HR response against Xanthomonas campestris pv. vesicatoria gene taxon:4081 20150713 Ethan Johnson SGN_gene 799 det1 fruit color TO:0002617 IMP T Solyc01g056340 mature green fruits are dark green (enhanced pigment) gene taxon:4081 20150713 Ethan Johnson SGN_gene 799 det1 fruit color TO:0002617 IMP T Solyc01g056340 immature green fruits are dark green gene taxon:4081 20150713 Ethan Johnson SGN_gene 799 det1 pigment content TO:0000494 IMP T Solyc01g056340 mature red fruits have enhanced pigment gene taxon:4081 20150713 Ethan Johnson -SGN_gene 5560 gamybl1 IMP Solyc01g009070 no seed germination gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 5560 gamybl1 IMP Solyc01g009070 no seed germination gene taxon:4081 20150713 Ethan Johnson SGN_gene 5560 gamybl1 gibberellic acid content TO:0002675 IMP T Solyc01g009070 gibberellin deficiency gene taxon:4081 20150713 Ethan Johnson -SGN_gene 961 man4 IMP Solyc01g008710 Inactive mannosidase in the fruit gene taxon:4081 20150713 Ethan Johnson -SGN_gene 292 y IMP Solyc01g079620 Decreased naringenin chalcone gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 961 man4 IMP Solyc01g008710 Inactive mannosidase in the fruit gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 292 y IMP Solyc01g079620 Decreased naringenin chalcone gene taxon:4081 20150713 Ethan Johnson SGN_gene 292 y epicarp color TO:0002620 IMP T Solyc01g079620 Colorless fruit epidermis gene taxon:4081 20150713 Ethan Johnson -SGN_gene 8308 CD2 IMP Solyc01g091630 Decreased cutin gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 8308 CD2 IMP Solyc01g091630 Decreased cutin gene taxon:4081 20150713 Ethan Johnson SGN_gene 253 chln leaf vein color TO:0000719 IMP T Solyc01g100490 yellow leaf veins gene taxon:4081 20150713 Ethan Johnson SGN_gene 253 chln plant height TO:0000207 IMP T Solyc01g100490 small plant size gene taxon:4081 20150713 Ethan Johnson SGN_gene 253 chln leaf chlorosis TO:0006060 IMP T Solyc01g100490 chlorotic upper leaves gene taxon:4081 20150713 Ethan Johnson -SGN_gene 662 Gr IMP Solyc01g104340 green fruit flesh gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 662 Gr IMP Solyc01g104340 green fruit flesh gene taxon:4081 20150713 Ethan Johnson SGN_gene 662 Gr lycopene content TO:0002699 IMP T Solyc01g104340 decreased fruit lycopene gene taxon:4081 20150713 Ethan Johnson SGN_gene 662 Gr ethylene sensitivity TO:0000173 IMP T Solyc01g104340 reduced ethylene sensitivity in fruits gene taxon:4081 20150713 Ethan Johnson SGN_gene 662 Gr leaf senescence TO:0000249 IMP T Solyc01g104340 delayed petal senescence gene taxon:4081 20150713 Ethan Johnson -SGN_gene 662 Gr IMP Solyc01g104340 Delayed floral abscission gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 662 Gr IMP Solyc01g104340 Delayed floral abscission gene taxon:4081 20150713 Ethan Johnson SGN_gene 662 Gr fruit growth and development trait TO:0000929 IMP T Solyc01g104340 fruit softening inhibited gene taxon:4081 20150713 Ethan Johnson SGN_gene 1515 ddb1 chlorophyll content TO:0000495 IMP T Solyc02g021650 chlorophyll increased gene taxon:4081 20150713 Ethan Johnson SGN_gene 1515 ddb1 carotenoid content TO:0000496 IMP T Solyc02g021650 carotenoids increased gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1515 ddb1 IMP Solyc02g021650 ascorbic acid increased gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1515 ddb1 IMP Solyc02g021650 increased plastid number gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 1515 ddb1 IMP Solyc02g021650 ascorbic acid increased gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 1515 ddb1 IMP Solyc02g021650 increased plastid number gene taxon:4081 20150713 Ethan Johnson SGN_gene 1515 ddb1 plastid development trait TO:0002714 IMP T Solyc02g021650 increased plastid size gene taxon:4081 20150713 Ethan Johnson SGN_gene 1515 ddb1 leaf color TO:0000326 IMP T Solyc02g021650 dark green leaves gene taxon:4081 20150713 Ethan Johnson SGN_gene 1515 ddb1 fruit color TO:0002617 IMP T Solyc02g021650 deep red fruits gene taxon:4081 20150713 Ethan Johnson -SGN_gene 301 s IMP Solyc02g077390 compound inflorescence gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 301 s IMP Solyc02g077390 compound inflorescence gene taxon:4081 20150713 Ethan Johnson SGN_gene 5483 LeT6 leaf midvein anatomy and morphology trait TO:0000822 IMP T Solyc02g081120 midvein foreshortened gene taxon:4081 20150713 Ethan Johnson SGN_gene 5483 LeT6 leaf vein size TO:0000821 IMP T Solyc02g081120 lateral vein foreshortened gene taxon:4081 20150713 Ethan Johnson SGN_gene 5483 LeT6 petiole size TO:0000768 IMP T Solyc02g081120 petiole foreshortened gene taxon:4081 20150713 Ethan Johnson SGN_gene 5483 LeT6 vascular leaf anatomy and morphology trait TO:0000419 IMP T Solyc02g081120 crumpled leaf gene taxon:4081 20150713 Ethan Johnson -SGN_gene 5483 LeT6 IMP Solyc02g081120 Leaves 3-4 pinnately compound with clavate segments gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 5483 LeT6 IMP Solyc02g081120 Leaves 3-4 pinnately compound with clavate segments gene taxon:4081 20150713 Ethan Johnson SGN_gene 5483 LeT6 internode length TO:0000145 IMP T Solyc02g081120 Shortened internodes gene taxon:4081 20150713 Ethan Johnson SGN_gene 128 an flower shape TO:0000859 IMP T Solyc02g081670 flowers greatly changed gene taxon:4081 20150713 Ethan Johnson -SGN_gene 128 an IMP Solyc02g081670 compound inflorescence gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 128 an IMP Solyc02g081670 compound inflorescence gene taxon:4081 20150713 Ethan Johnson SGN_gene 1094 o fruit shape TO:0002628 IMP T Solyc02g085500 ovate fruit gene taxon:4081 20150713 Ethan Johnson SGN_gene 1094 o fruit shape TO:0002628 IMP T Solyc02g085500 pear shaped fruit gene taxon:4081 20150713 Ethan Johnson -SGN_gene 8213 CER6 IMP Solyc02g085870 Increased water loss gene taxon:4081 20150713 Ethan Johnson -SGN_gene 428 d IMP Solyc02g089160 All parts foreshortened gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 8213 CER6 IMP Solyc02g085870 Increased water loss gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 428 d IMP Solyc02g089160 All parts foreshortened gene taxon:4081 20150713 Ethan Johnson SGN_gene 428 d leaf color TO:0000326 IMP T Solyc02g089160 leaves dark gene taxon:4081 20150713 Ethan Johnson -SGN_gene 428 d IMP Solyc02g089160 leaves rugose gene taxon:4081 20150713 Ethan Johnson -SGN_gene 428 d IMP Solyc02g089160 All parts extremely foreshortened gene taxon:4081 20150713 Ethan Johnson -SGN_gene 428 d IMP Solyc02g089160 All parts shortened gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 428 d IMP Solyc02g089160 leaves rugose gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 428 d IMP Solyc02g089160 All parts extremely foreshortened gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 428 d IMP Solyc02g089160 All parts shortened gene taxon:4081 20150713 Ethan Johnson SGN_gene 1599 psy1 fruit color TO:0002617 IMP T Solyc03g031860 yellow color of ripe fruit flesh gene taxon:4081 20150713 Ethan Johnson SGN_gene 1599 psy1 fruit color TO:0002617 IMP T Solyc03g031860 yellow fruit flesh gene taxon:4081 20150713 Ethan Johnson SGN_gene 1599 psy1 flower color TO:0000537 IMP T Solyc03g031860 lighter yellow flowers gene taxon:4081 20150713 Ethan Johnson SGN_gene 1599 psy1 fruit color TO:0002617 IMP T Solyc03g031860 reddish color of ripe fruit flesh gene taxon:4081 20150713 Ethan Johnson -SGN_gene 4476 zep IMP Solyc02g090890 wilty gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 4476 zep IMP Solyc02g090890 wilty gene taxon:4081 20150713 Ethan Johnson SGN_gene 4476 zep abscisic acid content TO:0002667 IMP T Solyc02g090890 abscisic acid deficiency gene taxon:4081 20150713 Ethan Johnson -SGN_gene 199 CrtR-b2 IMP Solyc03g007960 buff color corolla gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 199 CrtR-b2 IMP Solyc03g007960 buff color corolla gene taxon:4081 20150713 Ethan Johnson SGN_gene 1418 sucr sucrose content TO:0000328 IMP T Solyc03g083910 mature fruit accumulates sucrose gene taxon:4081 20150713 Ethan Johnson -SGN_gene 120 asc IMP Solyc03g114600 resistant to alternaria stem canker gene taxon:4081 20150713 Ethan Johnson -SGN_gene 532 fa IMP Solyc03g118160 giant gene taxon:4081 20150713 Ethan Johnson -SGN_gene 532 fa IMP Solyc03g118160 vegetative gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 120 asc IMP Solyc03g114600 resistant to alternaria stem canker gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 532 fa IMP Solyc03g118160 giant gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 532 fa IMP Solyc03g118160 vegetative gene taxon:4081 20150713 Ethan Johnson SGN_gene 532 fa inflorescence branching TO:0000050 IMP T Solyc03g118160 highly ramified inflorescence gene taxon:4081 20150713 Ethan Johnson SGN_gene 532 fa sterility related trait TO:0000485 IMP T Solyc03g118160 completely sterile gene taxon:4081 20150713 Ethan Johnson SGN_gene 431 div plant height TO:0000207 IMP T Solyc03g119060 small plant gene taxon:4081 20150713 Ethan Johnson -SGN_gene 431 div IMP Solyc03g119060 squarrose plant gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 431 div IMP Solyc03g119060 squarrose plant gene taxon:4081 20150713 Ethan Johnson SGN_gene 431 div leaf color TO:0000326 IMP T Solyc03g119060 intercostally yellowish leaves gene taxon:4081 20150713 Ethan Johnson SGN_gene 431 div leaf color TO:0000326 IMP T Solyc03g119060 ventrally purple leaves gene taxon:4081 20150713 Ethan Johnson SGN_gene 996 SlMlo1 fungal disease resistance TO:0000439 IMP T Solyc04g049090 resistance to powdery mildew gene taxon:4081 20150713 Ethan Johnson @@ -69,24 +69,24 @@ SGN_gene 347 cu3 plant height TO:0000207 IMP T Solyc04g051510 Dwarf gene taxon SGN_gene 347 cu3 hypocotyl anatomy and morphology trait TO:0000757 IMP T Solyc04g051510 short and thick hypocotyls gene taxon:4081 20150713 Ethan Johnson SGN_gene 347 cu3 fertility related trait TO:0000420 IMP T Solyc04g051510 reduced fertility. gene taxon:4081 20150713 Ethan Johnson SGN_gene 347 cu3 cotyledon anatomy and morphology trait TO:0000749 IMP T Solyc04g051510 curled cotyledons gene taxon:4081 20150713 Ethan Johnson -SGN_gene 347 cu3 IMP Solyc04g051510 dense leaves gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 347 cu3 IMP Solyc04g051510 dense leaves gene taxon:4081 20150713 Ethan Johnson SGN_gene 347 cu3 leaf curling TO:0002681 IMP T Solyc04g051510 curly leaves gene taxon:4081 20150713 Ethan Johnson SGN_gene 347 cu3 plant height TO:0000207 IMP T Solyc04g051510 reduced height to 50% gene taxon:4081 20150713 Ethan Johnson SGN_gene 8373 ORR fruit ripening trait TO:0002633 IMP T Solyc04g057980 orange ripening gene taxon:4081 20150713 Ethan Johnson -SGN_gene 463 e IMP Solyc04g076850 few fused leaf segments gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 463 e IMP Solyc04g076850 few fused leaf segments gene taxon:4081 20150713 Ethan Johnson SGN_gene 463 e leaf midvein anatomy and morphology trait TO:0000822 IMP T Solyc04g076850 distorted midvein gene taxon:4081 20150713 Ethan Johnson -SGN_gene 463 e IMP Solyc04g076850 entire or broad leaflets gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 463 e IMP Solyc04g076850 entire or broad leaflets gene taxon:4081 20150713 Ethan Johnson SGN_gene 463 e sepal anatomy and morphology trait TO:0000864 IMP T Solyc04g076850 asymmetrical sepals gene taxon:4081 20150713 Ethan Johnson SGN_gene 463 e leaf anatomy and morphology trait TO:0000748 IMP T Solyc04g076850 simple leaves gene taxon:4081 20150713 Ethan Johnson SGN_gene 463 e plant trait TO:0000387 IMP T Solyc04g076850 multifusion phenotype gene taxon:4081 20150713 Ethan Johnson -SGN_gene 4495 cwp1 IMP Solyc04g082520 dehydration of fruits gene taxon:4081 20150713 Ethan Johnson -SGN_gene 4495 cwp1 IMP Solyc04g082520 microfissuring of fruit cuticle gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 4495 cwp1 IMP Solyc04g082520 dehydration of fruits gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 4495 cwp1 IMP Solyc04g082520 microfissuring of fruit cuticle gene taxon:4081 20150713 Ethan Johnson SGN_gene 900 lyr leaf shape TO:0000492 IMP T Solyc05g009380 first leaves entire (simple) gene taxon:4081 20150713 Ethan Johnson SGN_gene 900 lyr leaf shape TO:0000492 IMP T Solyc05g009380 other leaves fan shaped gene taxon:4081 20150713 Ethan Johnson SGN_gene 900 lyr female sterility TO:0000358 IMP T Solyc05g009380 female sterile gene taxon:4081 20150713 Ethan Johnson SGN_gene 1296 mc sepal size TO:0002604 IMP T Solyc05g012020 Sepal large gene taxon:4081 20150713 Ethan Johnson SGN_gene 1296 mc sepal anatomy and morphology trait TO:0000864 IMP T Solyc05g012020 Leaf-like sepal gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1296 mc IMP Solyc05g012020 pedicel joint enlarged gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 1296 mc IMP Solyc05g012020 pedicel joint enlarged gene taxon:4081 20150713 Ethan Johnson SGN_gene 1296 mc inflorescence anatomy and morphology trait TO:0000373 IMP T Solyc05g012020 inflorescence indeterminate gene taxon:4081 20150713 Ethan Johnson SGN_gene 541 Fen bacterial disease resistance TO:0000315 IMP T Solyc05g013290 resistance to Pseudomonas syringae gene taxon:4081 20150714 Ethan Johnson SGN_gene 1238 Pto bacterial disease resistance TO:0000315 IMP T Solyc05g013300 resistance to Pseudomonas syringae gene taxon:4081 20150714 Ethan Johnson @@ -94,55 +94,55 @@ SGN_gene 1238 Pto insecticide sensitivity TO:0000182 IMP T Solyc05g013300 fent SGN_gene 1296 rin fruit color TO:0002617 IMP T Solyc05g056620 Fruits green at maturity gene taxon:4081 20150714 Ethan Johnson SGN_gene 1296 rin fruit color TO:0002617 IMP T Solyc05g056620 Fruits turning bright yellow, gene taxon:4081 20150714 Ethan Johnson SGN_gene 1296 rin fruit ripening trait TO:0002633 IMP T Solyc05g056620 retarded ripening gene taxon:4081 20150714 Ethan Johnson -SGN_gene 271 cf2 IMP solyc06g008300 Resistant to Cladosporium fulvum gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1322 sp IMP Solyc06g074350 indeterminate growth habit gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1322 sp IMP Solyc06g074350 determinate habit gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 271 cf2 IMP solyc06g008300 Resistant to Cladosporium fulvum gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 1322 sp IMP Solyc06g074350 indeterminate growth habit gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 1322 sp IMP Solyc06g074350 determinate habit gene taxon:4081 20150714 Ethan Johnson SGN_gene 43107 Cul1 self-incompatibility IMP Solyc06g084520 pollen rejection gene taxon:4081 20150714 Ethan Johnson -SGN_gene 43107 Cul1 IMP Solyc06g084520 compatibility on styles gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 43107 Cul1 IMP Solyc06g084520 compatibility on styles gene taxon:4081 20150714 Ethan Johnson SGN_gene 1068 not leaf color TO:0000326 IMP T Solyc07g056570 green-yellow leaves gene taxon:4081 20150714 Ethan Johnson SGN_gene 1068 not leaf anatomy and morphology trait TO:0000748 IMP T Solyc07g056570 delicate leaves gene taxon:4081 20150714 Ethan Johnson SGN_gene 1068 not leaf rolling TO:0000085 IMP T Solyc07g056570 wilts in hot weather gene taxon:4081 20150714 Ethan Johnson SGN_gene 1068 not leaf rolling TO:0000085 IMP T Solyc07g056570 wilts in dry weather gene taxon:4081 20150714 Ethan Johnson -SGN_gene 483 etr2 IMP Solyc07g056580 delayed abscission gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 483 etr2 IMP Solyc07g056580 delayed abscission gene taxon:4081 20150714 Ethan Johnson SGN_gene 483 etr2 internode length TO:0000145 IMP T Solyc07g056580 shorter internode length gene taxon:4081 20150714 Ethan Johnson SGN_gene 780 ls basal axillary branch number TO:0020024 IMP T Solyc07g066250 Few or no axillary branches gene taxon:4081 20150714 Ethan Johnson -SGN_gene 780 ls IMP Solyc07g066250 corolla suppressed gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 780 ls IMP Solyc07g066250 corolla suppressed gene taxon:4081 20150714 Ethan Johnson SGN_gene 780 ls male sterility TO:0000437 IMP T Solyc07g066250 partially male sterile gene taxon:4081 20150714 Ethan Johnson SGN_gene 661 gf fruit color TO:0002617 IMP T Solyc08g080090 ripe fruit purplish-brown color. gene taxon:4081 20150714 Ethan Johnson SGN_gene 762 lin5 sugar content TO:0000333 IMP T Solyc09g010080 high fruit sugar gene taxon:4081 20150714 Ethan Johnson SGN_gene 1164 phyA red light sensitivity TO:0000158 IMP T Solyc10g044670 far red light insensitive gene taxon:4081 20150714 Ethan Johnson SGN_gene 111013 sun fruit length TO:0002626 IMP T Solyc10g079240 elongated fruit shape gene taxon:4081 20150714 Ethan Johnson SGN_gene 246 crtiso fruit color TO:0002617 IMP T Solyc10g081650 fruit flesh orange gene taxon:4081 20150714 Ethan Johnson -SGN_gene 246 crtiso IMP Solyc10g081650 stamens orange gene taxon:4081 20150714 Ethan Johnson -SGN_gene 246 crtiso IMP Solyc10g081650 yellowish growing point gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 246 crtiso IMP Solyc10g081650 stamens orange gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 246 crtiso IMP Solyc10g081650 yellowish growing point gene taxon:4081 20150714 Ethan Johnson SGN_gene 246 crtiso leaf color TO:0000326 IMP T Solyc10g081650 light green foliage gene taxon:4081 20150714 Ethan Johnson -SGN_gene 246 crtiso IMP Solyc10g081650 yellowing near growing point gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 246 crtiso IMP Solyc10g081650 yellowing near growing point gene taxon:4081 20150714 Ethan Johnson SGN_gene 755 j plant height TO:0000207 IMP T Solyc11g010570 higher plant gene taxon:4081 20150714 Ethan Johnson SGN_gene 755 j internode length TO:0000145 IMP T Solyc11g010570 long internodes gene taxon:4081 20150714 Ethan Johnson SGN_gene 755 j fruit weight TO:0002746 IMP T Solyc11g010570 heavier fruits gene taxon:4081 20150714 Ethan Johnson SGN_gene 755 j seed number TO:0000445 IMP T Solyc11g010570 less seeds gene taxon:4081 20150714 Ethan Johnson SGN_gene 755 j inflorescence branch anatomy and morphology trait TO:0000784 IMP T Solyc11g010570 Jointless pedicels gene taxon:4081 20150714 Ethan Johnson -SGN_gene 755 j IMP Solyc11g010570 proliferated inflorescence. Growth rate increased gene taxon:4081 20150714 Ethan Johnson -SGN_gene 4504 GAI IMP Solyc11g011260 suppressed axillary bud development gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 755 j IMP Solyc11g010570 proliferated inflorescence. Growth rate increased gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 4504 GAI IMP Solyc11g011260 suppressed axillary bud development gene taxon:4081 20150714 Ethan Johnson SGN_gene 1187 ptox chlorophyll content TO:0000495 IMP T Solyc11g011990 incomplete chlorophyll deficiency gene taxon:4081 20150714 Ethan Johnson SGN_gene 717 i2 fungal disease resistance TO:0000439 IMP T Solyc11g071430 Resistance to Fusarium oxysporum gene taxon:4081 20150714 Ethan Johnson SGN_gene 538 fas carpel anatomy and morphology trait TO:0006012 IMP T Solyc11g071810 unfused carpels gene taxon:4081 20150714 Ethan Johnson -SGN_gene 538 fas IMP Solyc11g071810 Fruits many-loculed gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 538 fas IMP Solyc11g071810 Fruits many-loculed gene taxon:4081 20150714 Ethan Johnson SGN_gene 391 del fruit color TO:0002617 IMP T Solyc12g008980 reddish-orange mature fruit color gene taxon:4081 20150714 Ethan Johnson -SGN_gene 391 del IMP Solyc12g008980 lycopene inhibition gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 391 del IMP Solyc12g008980 lycopene inhibition gene taxon:4081 20150714 Ethan Johnson SGN_gene 391 del carotene content TO:0000289 IMP T Solyc12g008980 increased delta-carotene gene taxon:4081 20150714 Ethan Johnson SGN_gene 1605 yg2 leaf chlorosis TO:0006060 IMP T Solyc12g009470 Foliage chlorotic yellow-green gene taxon:4081 20150714 Ethan Johnson SGN_gene 1605 yg2 hypocotyl anatomy and morphology trait TO:0000757 IMP T Solyc12g009470 long hypocotyls gene taxon:4081 20150714 Ethan Johnson SGN_gene 1605 yg2 leaf color TO:0000326 IMP T Solyc12g009470 All foliar parts yellow gene taxon:4081 20150714 Ethan Johnson -SGN_gene 482 etr1 IMP Solyc12g011330 Delayed abscission gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 482 etr1 IMP Solyc12g011330 Delayed abscission gene taxon:4081 20150715 Ethan Johnson SGN_gene 482 etr1 internode length TO:0000145 IMP T Solyc12g011330 Shorter internode length gene taxon:4081 20150715 Ethan Johnson -SGN_gene 482 etr1 IMP Solyc12g011330 Reduced auxin movement gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 482 etr1 IMP Solyc12g011330 Reduced auxin movement gene taxon:4081 20150715 Ethan Johnson SGN_gene 277 cf9 fungal disease resistance TO:0000439 IMP T AJ002236 Resistance to Cladosporium fulvum gene taxon:4081 20150715 Ethan Johnson SGN_gene 687 hero nematode damage resistance TO:0000384 IMP T AJ457051 Resistance to potato cyst nematode gene taxon:4081 20150715 Ethan Johnson SGN_gene 43154 HT-A self-incompatibility TO:0000310 IMP T AB066584 self-incompatibility gene taxon:4081 20150715 Ethan Johnson SGN_gene 43154 HT-A gametophytic incompatibility TO:0000049 IMP T AB066582 gametophytic self-incompatibility. gene taxon:4081 20150715 Ethan Johnson -SGN_gene 881 lc IMP JF284938 Reduced locule number gene taxon:4081 20150715 Ethan Johnson -SGN_gene 881 lc IMP JF285116 High locule number gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 881 lc IMP JF284938 Reduced locule number gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 881 lc IMP JF285116 High locule number gene taxon:4081 20150715 Ethan Johnson SGN_gene 1305 Mi1-2 nematode damage resistance TO:0000384 IMP T SGN-U564276 High-level root-knot nematode resistance gene taxon:4081 20150715 Ethan Johnson SGN_gene 1305 Mi1-2 aphid resistance TO:0006067 IMP T SGN-U564276 Resistance to potato aphids gene taxon:4081 20150715 Ethan Johnson SGN_gene 1305 Mi1-2 IMP SGN-U564276 Resistance to potato whitefly gene taxon:4081 20150715 Ethan Johnson @@ -151,17 +151,17 @@ SGN_gene 1345 sit leaf height TO:0000541 IMP T HQ317907 very short leaves gene SGN_gene 1345 sit leaf curling TO:0002681 IMP T HQ317907 leaves down curled gene taxon:4081 20150715 Ethan Johnson SGN_gene 1345 sit leaf necrosis TO:0000652 IMP T HQ317907 becoming necrotic gene taxon:4081 20150715 Ethan Johnson SGN_gene 1345 sit abscisic acid content TO:0002667 IMP T HQ317908 Abscisic acid deficient gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1345 sit IMP HQ317908 wilty gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1462 tm2 IMP FJ817603 High-level tobacco mosaic virus resistance gene taxon:4081 20150715 Ethan Johnson -SGN_gene 111014 wo IMP Solyc02g080490 All parts densely pubescent gene taxon:4081 20150715 Ethan Johnson -SGN_gene 111014 wo IMP Solyc02g080490 wooly gene taxon:4081 20150715 Ethan Johnson -SGN_gene 212 bl IMP Solyc11g069030 Determinate habit gene taxon:4081 20150715 Ethan Johnson -SGN_gene 212 bl IMP Solyc11g069030 strongly uprolled pinnae gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 1345 sit IMP HQ317908 wilty gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 1462 tm2 IMP FJ817603 High-level tobacco mosaic virus resistance gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 111014 wo IMP Solyc02g080490 All parts densely pubescent gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 111014 wo IMP Solyc02g080490 wooly gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 212 bl IMP Solyc11g069030 Determinate habit gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 212 bl IMP Solyc11g069030 strongly uprolled pinnae gene taxon:4081 20150715 Ethan Johnson SGN_gene 212 bl flower shape TO:0000859 IMP T Solyc11g069030 fasciated flowers gene taxon:4081 20150715 Ethan Johnson SGN_gene 212 bl fruit shape TO:0002628 IMP T Solyc11g069030 fasciated fruits gene taxon:4081 20150715 Ethan Johnson SGN_gene 212 bl stem anatomy and morphology trait TO:0000361 IMP T Solyc11g069030 Stem terminating in first inflorescence gene taxon:4081 20150715 Ethan Johnson -SGN_gene 212 bl IMP Solyc11g069030 midribs may develop adventitious shoots gene taxon:4081 20150715 Ethan Johnson -SGN_gene 212 bl IMP Solyc11g069030 Determinant growth gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 212 bl IMP Solyc11g069030 midribs may develop adventitious shoots gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 212 bl IMP Solyc11g069030 Determinant growth gene taxon:4081 20150715 Ethan Johnson SGN_gene 212 bl sepal anatomy and morphology trait TO:0000864 IMP T Solyc11g069030 leafy calyx gene taxon:4081 20150715 Ethan Johnson SGN_gene 212 bl sepal anatomy and morphology trait TO:0000864 IMP T Solyc11g069030 enlarged calyx gene taxon:4081 20150715 Ethan Johnson SGN_gene 212 bl inflorescence anatomy and morphology trait TO:0000373 IMP T Solyc11g069030 few flowered inflorescence gene taxon:4081 20150715 Ethan Johnson @@ -172,8 +172,8 @@ SGN_gene 1046 Nr2 fruit firmness TO:0002634 IMP T Solyc09g075440 fruit flesh f SGN_gene 555 flc leaf color TO:0000326 IMP T Solyc07g066480 yellowish leaves gene taxon:4081 20150715 Ethan Johnson SGN_gene 555 flc leaf rolling TO:0000085 IMP T Solyc07g066480 overwilting leaves gene taxon:4081 20150715 Ethan Johnson SGN_gene 555 flc leaf height TO:0000541 IMP T Solyc07g066480 short leaves gene taxon:4081 20150715 Ethan Johnson -SGN_gene 555 flc IMP Solyc07g066480 nearly unbranched plant and later spreading gene taxon:4081 20150715 Ethan Johnson -SGN_gene 555 flc IMP Solyc07g066480 erect plant gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 555 flc IMP Solyc07g066480 nearly unbranched plant and later spreading gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 555 flc IMP Solyc07g066480 erect plant gene taxon:4081 20150715 Ethan Johnson SGN_gene 555 flc plant height TO:0000207 IMP T Solyc07g066480 small plant gene taxon:4081 20150715 Ethan Johnson SGN_gene 539 fer leaf chlorosis TO:0006060 IMP T Solyc06g051550 Severe chlorosis beginning in first true leaves gene taxon:4081 20150715 Ethan Johnson SGN_gene 539 fer mineral and ion transport trait TO:0020096 IMP T Solyc06g051550 faulty iron transport in xylem gene taxon:4081 20150715 Ethan Johnson @@ -189,14 +189,14 @@ SGN_gene 8229 GOB shoot apical meristem development TO:0006020 IMP T Solyc07g0 SGN_gene 1465 APS1 gravity response trait TO:0002693 IMP T In seedlings, roots grow agravitropicaly for first 4-5 days after germination, then gradually re-orientation towards gravity. gene taxon:4081 20150715 Ethan Johnson SGN_gene 1465 APS1 gravity response trait TO:0002693 IMP T APS1 Shoots show mild agravitropism throughout life of plant. gene taxon:4081 20150715 Ethan Johnson SGN_gene 1465 APS1 fruit size TO:0002625 IMP T APS1 Fruit size slightly reduced. gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1465 APS1 IMP APS1 Root tips do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1465 APS1 IMP APS1 leaves do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1465 APS1 IMP APS1 fruit do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1465 APS1 IMP APS1 stems do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 1465 APS1 IMP APS1 Root tips do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 1465 APS1 IMP APS1 leaves do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 1465 APS1 IMP APS1 fruit do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 1465 APS1 IMP APS1 stems do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson SGN_gene 1465 APS1 starch content TO:0000696 IMP T APS1 Starch levels in mature green fruit below detection limit of spectrophotometric assay. gene taxon:4081 20150715 Ethan Johnson SGN_gene 1465 APS1 sugar content TO:0000333 IMP T APS1 BRIX levels slightly lower than wild type. gene taxon:4081 20150715 Ethan Johnson SGN_gene 20827 rdr6 leaf width TO:0000370 IMP T Solyc04g014870 slender leaves gene taxon:4081 20150715 Ethan Johnson SGN_gene 20827 rdr6 plant height TO:0000207 IMP T Solyc04g014870 dwarfed plant gene taxon:4081 20150715 Ethan Johnson SGN_gene 20827 rdr6 petal width TO:0002606 IMP T Solyc04g014870 slender petals gene taxon:4081 20150715 Ethan Johnson SGN_gene 20827 rdr6 leaf shape TO:0000492 IMP T Solyc04g014870 shoestring leaves gene taxon:4081 20150715 Ethan Johnson -SGN_gene 20827 rdr6 IMP Solyc04g014870 no leaf blade expansion gene taxon:4081 20150715 Ethan Johnson \ No newline at end of file +!SGN_gene 20827 rdr6 IMP Solyc04g014870 no leaf blade expansion gene taxon:4081 20150715 Ethan Johnson \ No newline at end of file