From: elserj <elserj@localhost>
Date: Tue, 6 Dec 2016 22:28:27 +0000 (+0000)
Subject: Add beaver no-isoforms
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=76a7a5211796b6cfd66625b8939cf88832ccac50;p=old-jaiswallab-svn%2F.git

Add beaver no-isoforms

svn path=/; revision=650
---

diff --git a/interactome_scripts/find_species.pl b/interactome_scripts/find_species.pl
index 98c0e30..ea74fc3 100755
--- a/interactome_scripts/find_species.pl
+++ b/interactome_scripts/find_species.pl
@@ -50,8 +50,10 @@ sub find_species {
 		$species = "Capsicum_annuum";
 	}elsif ($temp =~ /Carica\_papaya/) {
 		$species = "Carica_papaya";
-	}elsif ($temp =~ /Castor_canadensis/) {
+	}elsif ($temp =~ /Castor_canadensis_/) {
 		$species = "Castor_canadensis";
+	}elsif ($temp =~ /Castor_canadensis.no.isoforms/) {
+		$species = "Castor_canadensis.no.isoforms";
 	}elsif ($temp =~ /Cavia_porcellus/) {
 		$species = "Cavia_porcellus";
 	}elsif ($temp =~ /Chlamy/) {
@@ -359,6 +361,9 @@ sub find_gene {
 		my ($gene_number,$gene_id) = split(/::/, $gene_info);
 		my ($trinity_id, $m_number) = split(/\|/, $gene_id);
 		$gene = $gene_number; #???
+	}elsif ($species eq "Castor_canadensis.no.isoforms") {
+		my ($gene_id,$m_number, $g_number) = split(/\|/, $gene_header);
+		$gene = $gene_id;
 	}elsif ($species eq "Cavia_porcellus") {
 		my ($isoform, $type, $scaffold, $temp_gene, $transcript, $gene_biotype, $transcript_biotype, $gene_symbol, $description) = split(/\s/, $gene_header);
 		$gene = $isoform;