From: preecej <preecej@localhost>
Date: Fri, 13 Jul 2012 17:46:16 +0000 (+0000)
Subject: Added "Assigned By" field
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=77a58e933b55cb55141ce70d742d0826132381f6;p=old-jaiswallab-svn%2F.git

Added "Assigned By" field

svn path=/; revision=358
---

diff --git a/planteome/paw/forms/Annotation.wiki b/planteome/paw/forms/Annotation.wiki
index b9c677d..7d7ac0b 100644
--- a/planteome/paw/forms/Annotation.wiki
+++ b/planteome/paw/forms/Annotation.wiki
@@ -153,6 +153,7 @@ __NOTOC__
             |? has_Aspect
             |? has_Evidence_Code
             |? has_Evidence
+            |? is_Assigned_By
         }}
         | Add ontological associations for this annotation.<br>{{#formlink:form=Ontological_References|link text=Add|link type=button|query string=Ontological_References[Annotation Page]={{PAGENAME}}&super_page={{PAGENAME}} }}
       }}
diff --git a/planteome/paw/forms/Ontological_References.wiki b/planteome/paw/forms/Ontological_References.wiki
index eef09a0..9ce0479 100644
--- a/planteome/paw/forms/Ontological_References.wiki
+++ b/planteome/paw/forms/Ontological_References.wiki
@@ -24,6 +24,7 @@ __NOTOC__
 <br><br>'''Evidence Code:'''<br>
 {{{field|Evidence Code|list}}}
 <br><br>'''Evidence:''' {{{field|Evidence|}}}
+<br><br>'''Assigned By:''' {{{field|Assigned By|}}}
 {{{end template}}}
 
 === Gene Ontology ===
@@ -32,6 +33,7 @@ __NOTOC__
 <br><br>'''Evidence Code:'''<br>
 {{{field|Evidence Code|list}}}
 <br><br>'''Evidence:''' {{{field|Evidence|}}}
+<br><br>'''Assigned By:''' {{{field|Assigned By|}}}
 {{{end template}}}
 
 === Other Ontologies ===
@@ -43,6 +45,7 @@ __NOTOC__
 <br><br>'''Evidence Code:'''<br>
 {{{field|Evidence Code|list}}}
 <br><br>'''Evidence:''' {{{field|Evidence|}}}
+<br><br>'''Assigned By:''' {{{field|Assigned By|}}}
 {{{end template}}}
 
 {{{standard input|summary}}}
diff --git a/planteome/paw/templates/Annotation.wiki b/planteome/paw/templates/Annotation.wiki
index f6d4f54..34a74f8 100644
--- a/planteome/paw/templates/Annotation.wiki
+++ b/planteome/paw/templates/Annotation.wiki
@@ -100,6 +100,7 @@ Edit the page to see the template text.
         |? has_Aspect
         |? has_Evidence_Code
         |? has_Evidence
+        |? is_Assigned_By
     }}
     | There are no ontological associations available for this gene annotation.
 }}
@@ -118,8 +119,8 @@ Edit the page to see the template text.
 
 = Literature =
 
-{{#if: {{#ask:[[Category:Publications]][[Is Associated With Annotations::~*{{PAGENAME}}* ]] OR [[Category:Reference Publications]][[Is Associated With Annotations::~*{{PAGENAME}}* ]] }}
-    | {{#ask:[[Category:Publications]][[Is Associated With Annotations::~*{{PAGENAME}}* ]] OR [[Category:Reference Publications]][[Is Associated With Annotations::~*{{PAGENAME}}* ]]
+{{#if: {{#ask:[[Category:Publications]][[Is Associated With Annotations::{{PAGENAME}} ]] OR [[Category:Reference Publications]][[Is Associated With Annotations::{{PAGENAME}} ]] }}
+    | {{#ask:[[Category:Publications]][[Is Associated With Annotations::{{PAGENAME}} ]] OR [[Category:Reference Publications]][[Is Associated With Annotations::{{PAGENAME}} ]]
         |? has First Author
         |? has Publication Title
         |? has Journal Name
diff --git a/planteome/paw/templates/Gene_Ontology_Reference_Repeater.wiki b/planteome/paw/templates/Gene_Ontology_Reference_Repeater.wiki
index 019da7a..f657db6 100644
--- a/planteome/paw/templates/Gene_Ontology_Reference_Repeater.wiki
+++ b/planteome/paw/templates/Gene_Ontology_Reference_Repeater.wiki
@@ -8,6 +8,7 @@ It should be called in the following format:
 |Aspect=
 |Evidence Code=
 |Evidence=
+|Assigned By=
 }}
 </pre>
 Edit the page to see the template text.
@@ -23,6 +24,7 @@ Edit the page to see the template text.
 |has_Aspect={{#external_value:term_aspect}}
 |has_Evidence_Code#list={{{Evidence Code|}}}
 |has_Evidence#list={{{Evidence|}}}
+|is_Assigned_By={{{Assigned By|}}}
 }}
 {| class="wikitable"
 ! Ontology
@@ -51,6 +53,9 @@ Edit the page to see the template text.
 |-
 ! Evidence
 | {{#arraymap:{{{Evidence|}}}|,|x|[[Has Evidence::x]]}}
+|-
+! Assigned By
+| [[Is Assigned By::{{{Assigned By|}}}]]
 |}
 </includeonly>
 
diff --git a/planteome/paw/templates/Ontological_Reference_Repeater.wiki b/planteome/paw/templates/Ontological_Reference_Repeater.wiki
index 44672e9..508742d 100644
--- a/planteome/paw/templates/Ontological_Reference_Repeater.wiki
+++ b/planteome/paw/templates/Ontological_Reference_Repeater.wiki
@@ -9,6 +9,7 @@ It should be called in the following format:
 |Aspect=
 |Evidence Code=
 |Evidence=
+|Assigned By=
 }}
 </pre>
 Edit the page to see the template text.
@@ -19,6 +20,7 @@ Edit the page to see the template text.
 |has_Aspect={{{Aspect|}}}
 |has_Evidence_Code#list={{{Evidence Code|}}}
 |has_Evidence#list={{{Evidence|}}}
+|is_Assigned_By={{{Assigned By|}}}
 }}
 {| class="wikitable"
 ! Ontology
@@ -38,6 +40,9 @@ Edit the page to see the template text.
 |-
 ! Evidence
 | {{#arraymap:{{{Evidence|}}}|,|x|[[Has Evidence::x]]}}
+|-
+! Assigned By
+| [[Is Assigned By::{{{Assigned By|}}}]]
 |}
 </includeonly>
 
diff --git a/planteome/paw/templates/Plant_Ontology_Reference_Repeater.wiki b/planteome/paw/templates/Plant_Ontology_Reference_Repeater.wiki
index ecfda58..e475be4 100644
--- a/planteome/paw/templates/Plant_Ontology_Reference_Repeater.wiki
+++ b/planteome/paw/templates/Plant_Ontology_Reference_Repeater.wiki
@@ -8,6 +8,7 @@ It should be called in the following format:
 |Aspect=
 |Evidence Code=
 |Evidence=
+|Assigned By=
 }}
 </pre>
 Edit the page to see the template text.
@@ -23,6 +24,7 @@ Edit the page to see the template text.
 |has_Aspect={{#external_value:term_aspect}}
 |has_Evidence_Code#list={{{Evidence Code|}}}
 |has_Evidence#list={{{Evidence|}}}
+|is_Assigned_By={{{Assigned By|}}}
 }}
 [[Has Term Search Type::{{{Term Search Type|}}}]]
 {| class="wikitable"
@@ -52,6 +54,9 @@ Edit the page to see the template text.
 |-
 ! Evidence
 | {{#arraymap:{{{Evidence|}}}|,|x|[[Has Evidence::x]]}}
+|-
+! Assigned By
+| [[Is Assigned By::{{{Assigned By|}}}]]
 |}
 </includeonly>