From: elserj <elserj@localhost>
Date: Fri, 28 Aug 2015 21:31:07 +0000 (+0000)
Subject: Added Kalanchoe laxiflora
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=79e1a412d3b89b0b46e41212834bf639ada523a4;p=old-jaiswallab-svn%2F.git

Added Kalanchoe laxiflora

svn path=/; revision=631
---

diff --git a/interactome_scripts/find_species.pl b/interactome_scripts/find_species.pl
index 9e58d06..e6cd283 100755
--- a/interactome_scripts/find_species.pl
+++ b/interactome_scripts/find_species.pl
@@ -100,6 +100,8 @@ sub find_species {
 		$species = "Hordeum_vulgare";
 	}elsif ($temp =~ /Jatropha/) {
 		$species = "Jatropha_curcas";
+	}elsif ($temp =~ /Kalanchoe\_laxiflora/) {
+		$species = "Kalanchoe_laxiflora";
 	}elsif ($temp =~ /Laccaria/) {
 		$species = "Laccaria_bicolor";
 	}elsif ($temp =~ /Leersia\_perrieri/) {
@@ -384,6 +386,9 @@ sub find_gene {
 	}elsif ($species eq "Jatropha_curcas") {
 		my ($gene_id, $temp) = split(/\s/,$gene_header);
 		$gene = $gene_id;
+	}elsif ($species eq "Kalanchoe_laxiflora") {
+		my ($gene_id, $peptide, $locus, $ID, $annot) = split(/\s/,$gene_header);
+		$gene = $gene_id;
 	}elsif ($species eq "Laccaria_bicolor") {
 		my ($source,$spec,$gene_id,$scaffold) = split(/\|/, $gene_header);
 		$gene = $gene_id;
@@ -719,6 +724,12 @@ sub find_gene_synonym {
 		$gene_id =~ s/gene\://;
 		$peptide =~ s/\:pep//;
 		$synonym = "$peptide,$gene_id";
+	}elsif ($species eq "Kalanchoe_laxiflora") {
+		my ($gene_id, $peptide, $locus, $ID, $annot) = split(/\s/,$gene_header);
+		$peptide =~ s/polypeptide\=//;
+		$locus =~ s/locus\=//;
+		$ID =~ s/ID\=//;
+		$synonym = "$peptide,$locus,$ID";
 	}elsif ($species eq "Linum_usitatissimum") {
 		my ($transcript,$gene_id) = split(/\|/, $gene_header);
 		$synonym = $transcript;
@@ -938,6 +949,7 @@ sub all_species_array {
 	push (@spec_array, "Homo_sapiens");
 	push (@spec_array, "Hordeum_vulgare");
 	push (@spec_array, "Jatropha_curcas");
+	push (@spec_array, "Kalanchoe_laxiflora");
 	push (@spec_array, "Laccaria_bicolor");
 	push (@spec_array, "Linum_usitatissimum");
 	push (@spec_array, "Magnaporthe_grissa");