From: pankaj Date: Fri, 15 Oct 2004 19:40:09 +0000 (+0000) Subject: first trial version with annotations for "seed" term and its children X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=87d28341dad1705d7fbcad6caffc4656c6145213;p=associations%2F.git first trial version with annotations for "seed" term and its children svn path=/; revision=1 --- 87d28341dad1705d7fbcad6caffc4656c6145213 diff --git a/po-associations/phenotype_association.gramene_oryza b/po-associations/phenotype_association.gramene_oryza new file mode 100644 index 0000000..b084eb3 --- /dev/null +++ b/po-associations/phenotype_association.gramene_oryza @@ -0,0 +1,46 @@ +GR GR:0060019 agr1 PO:0009005 GR_ref:1477 IMP A agravitropism-1 gene taxon:4527 20040602 GR +GR GR:0060154 [cms-Kalinga-I] PO:0009005 GR_ref:5870 IMP A Cytoplasmic controlled cold tolerance gene taxon:4527 20040602 GR +GR GR:0060175 crl1 PO:0003008 GR_ref:6082 IMP A crown rootless-1 gene taxon:4527 20040602 GR +GR GR:0060176 crl2 PO:0003008 GR_ref:6082 IMP A crown rootless-2 gene taxon:4527 20040602 GR +GR GR:0061068 rrl1 PO:0009005 GR_ref:6870 IMP A reduced root length-1 gene taxon:4527 20040602 GR +GR GR:0061069 rrl2 PO:0009005 GR_ref:6870 IMP A reduced root length-2 gene taxon:4527 20040602 GR +GR GR:0060019 agr1 PO:0009009 GR_ref:1477 IMP A agravitropism-1 gene taxon:4527 20040602 GR +GR GR:0060054 An7 PO:0009009 GR_ref:5859 IMP A Awn-7 gene taxon:4527 20040602 GR +GR GR:0060057 apd1 PO:0020110 GR_ref:1477 IMP A apical displacement-1 gene taxon:4527 20040602 GR +GR GR:0060057 apd1 PO:0020110 GR_ref:6103 IMP A apical displacement-1 gene taxon:4527 20040602 GR +GR GR:0060057 apd1 PO:0020033 GR_ref:6103 IMP A apical displacement-1 gene taxon:4527 20040602 GR +GR GR:0060057 apd1 PO:0020032 GR_ref:6103 IMP A apical displacement-1 gene taxon:4527 20040602 GR +GR GR:0060057 apd1 PO:0020031 GR_ref:6103 IMP A apical displacement-1 gene taxon:4527 20040602 GR +GR GR:0060142 cle1 PO:0009009 GR_ref:6103 IMP A club-shaped embryo-1 gene taxon:4527 20040602 GR +GR GR:0060182 Dhl1 PO:0009009 GR_ref:5587 IMP A Dominant hybrid lethal-1 "D1, Da, Dominant lethal from O. longistaminata" gene taxon:4527 20040602 GR +GR GR:0060182 Dhl1 PO:0009009 GR_ref:5546 IMP A Dominant hybrid lethal-1 "D1, Da, Dominant lethal from O. longistaminata" gene taxon:4527 20040602 GR +GR GR:0060183 Dhl2 PO:0009009 GR_ref:5587 IMP A Dominant hybrid lethal-2 "D2, Db, Dominant lethal from O. sativa" gene taxon:4527 20040602 GR +GR GR:0060183 Dhl2 PO:0009009 GR_ref:5546 IMP A Dominant hybrid lethal-2 "D2, Db, Dominant lethal from O. sativa" gene taxon:4527 20040602 GR +GR GR:0060238 dp1 PO:0009009 GR_ref:3019 IMP A depressed palea-1 pa gene taxon:4527 20040602 GR +GR GR:0060292 eml1 PO:0009009 GR_ref:5606 IMP A embryoless-1 gene taxon:4527 20040602 GR +GR GR:0060362 ge PO:0020110 GR_ref:3899 IMP A giant embryo ge1 gene taxon:4527 20040602 GR +GR GR:0060372 gle1 PO:0009009 GR_ref:6368 IMP A globular embryo-1 gene taxon:4527 20040602 GR +GR GR:0060373 gle2 PO:0009009 GR_ref:6368 IMP A globular embryo-2 gene taxon:4527 20040602 GR +GR GR:0060374 gle3 PO:0009009 GR_ref:6368 IMP A globular embryo-3 gene taxon:4527 20040602 GR +GR GR:0060586 orl1 PO:0020032 GR_ref:1477 IMP A organless embryo-1 gene taxon:4527 20040602 GR +GR GR:0060586 orl1 PO:0020031 GR_ref:1477 IMP A organless embryo-1 gene taxon:4527 20040602 GR +GR GR:0060722 ral1 PO:0020031 GR_ref:1477 IMP A radicleless-1 gene taxon:4527 20040602 GR +GR GR:0060722 ral1 PO:0020129 GR_ref:1477 IMP A radicleless-1 gene taxon:4527 20040602 GR +GR GR:0060734 re1 PO:0009009 GR_ref:6103 IMP A reduced embryo-1 gene taxon:4527 20040602 GR +GR GR:0060735 re2 PO:0009009 GR_ref:6103 IMP A reduced embryo-2 gene taxon:4527 20040602 GR +GR GR:0060736 re3 PO:0009009 GR_ref:6103 IMP A reduced embryo-3 gene taxon:4527 20040602 GR +GR GR:0060879 shl1 PO:0020036 GR_ref:6079 IMP A shootless-1 sh1 gene taxon:4527 20040602 GR +GR GR:0060879 shl1 PO:0020033 GR_ref:6079 IMP A shootless-1 sh1 gene taxon:4527 20040602 GR +GR GR:0060880 shl2 PO:0009009 GR_ref:6079 IMP A shootless-2 sh2 gene taxon:4527 20040602 GR +GR GR:0060881 shl3 PO:0020036 GR_ref:6079 IMP A shootless-3 sh3 gene taxon:4527 20040602 GR +GR GR:0060881 shl3 PO:0020033 GR_ref:6079 IMP A shootless-3 sh3 gene taxon:4527 20040602 GR +GR GR:0060882 shl4 PO:0009009 GR_ref:6079 IMP A shootless-4 sh4 gene taxon:4527 20040602 GR +GR GR:0060883 sho1 PO:0009009 GR_ref:6102 IMP A shoot organization-1 gene taxon:4527 20040602 GR +GR GR:0060884 sho2 PO:0009009 GR_ref:6102 IMP A shoot organization-2 gene taxon:4527 20040602 GR +GR GR:0060890 spt1 PO:0009009 GR_ref:6103 IMP A shoot position-1 shp1 gene taxon:4527 20040602 GR +GR GR:0060992 vep1 PO:0009009 GR_ref:1477 IMP A variable embryo phenotypes-1 odm9 gene taxon:4527 20040602 GR +GR GR:0060993 vep2 PO:0009009 GR_ref:1477 IMP A variable embryo phenotypes-2 odm11 gene taxon:4527 20040602 GR +GR GR:0060993 vep2 PO:0020031 GR_ref:1477 IMP A variable embryo phenotypes-2 odm11 gene taxon:4527 20040602 GR +GR GR:0060994 vep3 PO:0009009 GR_ref:1477 IMP A variable embryo phenotypes-3 qdm18 gene taxon:4527 20040602 GR +GR GR:0060994 vep3 PO:0020031 GR_ref:1477 IMP A variable embryo phenotypes-3 qdm18 gene taxon:4527 20040602 GR +GR GR:0061065 sho3 PO:0009009 GR_ref:6102 IMP A shoot organization-3 gene taxon:4527 20040602 GR diff --git a/po-associations/po_anatomy_gene_oryza_gramene.assoc b/po-associations/po_anatomy_gene_oryza_gramene.assoc new file mode 100644 index 0000000..b084eb3 --- /dev/null +++ b/po-associations/po_anatomy_gene_oryza_gramene.assoc @@ -0,0 +1,46 @@ +GR GR:0060019 agr1 PO:0009005 GR_ref:1477 IMP A agravitropism-1 gene taxon:4527 20040602 GR +GR GR:0060154 [cms-Kalinga-I] PO:0009005 GR_ref:5870 IMP A Cytoplasmic controlled cold tolerance gene taxon:4527 20040602 GR +GR GR:0060175 crl1 PO:0003008 GR_ref:6082 IMP A crown rootless-1 gene taxon:4527 20040602 GR +GR GR:0060176 crl2 PO:0003008 GR_ref:6082 IMP A crown rootless-2 gene taxon:4527 20040602 GR +GR GR:0061068 rrl1 PO:0009005 GR_ref:6870 IMP A reduced root length-1 gene taxon:4527 20040602 GR +GR GR:0061069 rrl2 PO:0009005 GR_ref:6870 IMP A reduced root length-2 gene taxon:4527 20040602 GR +GR GR:0060019 agr1 PO:0009009 GR_ref:1477 IMP A agravitropism-1 gene taxon:4527 20040602 GR +GR GR:0060054 An7 PO:0009009 GR_ref:5859 IMP A Awn-7 gene taxon:4527 20040602 GR +GR GR:0060057 apd1 PO:0020110 GR_ref:1477 IMP A apical displacement-1 gene taxon:4527 20040602 GR +GR GR:0060057 apd1 PO:0020110 GR_ref:6103 IMP A apical displacement-1 gene taxon:4527 20040602 GR +GR GR:0060057 apd1 PO:0020033 GR_ref:6103 IMP A apical displacement-1 gene taxon:4527 20040602 GR +GR GR:0060057 apd1 PO:0020032 GR_ref:6103 IMP A apical displacement-1 gene taxon:4527 20040602 GR +GR GR:0060057 apd1 PO:0020031 GR_ref:6103 IMP A apical displacement-1 gene taxon:4527 20040602 GR +GR GR:0060142 cle1 PO:0009009 GR_ref:6103 IMP A club-shaped embryo-1 gene taxon:4527 20040602 GR +GR GR:0060182 Dhl1 PO:0009009 GR_ref:5587 IMP A Dominant hybrid lethal-1 "D1, Da, Dominant lethal from O. longistaminata" gene taxon:4527 20040602 GR +GR GR:0060182 Dhl1 PO:0009009 GR_ref:5546 IMP A Dominant hybrid lethal-1 "D1, Da, Dominant lethal from O. longistaminata" gene taxon:4527 20040602 GR +GR GR:0060183 Dhl2 PO:0009009 GR_ref:5587 IMP A Dominant hybrid lethal-2 "D2, Db, Dominant lethal from O. sativa" gene taxon:4527 20040602 GR +GR GR:0060183 Dhl2 PO:0009009 GR_ref:5546 IMP A Dominant hybrid lethal-2 "D2, Db, Dominant lethal from O. sativa" gene taxon:4527 20040602 GR +GR GR:0060238 dp1 PO:0009009 GR_ref:3019 IMP A depressed palea-1 pa gene taxon:4527 20040602 GR +GR GR:0060292 eml1 PO:0009009 GR_ref:5606 IMP A embryoless-1 gene taxon:4527 20040602 GR +GR GR:0060362 ge PO:0020110 GR_ref:3899 IMP A giant embryo ge1 gene taxon:4527 20040602 GR +GR GR:0060372 gle1 PO:0009009 GR_ref:6368 IMP A globular embryo-1 gene taxon:4527 20040602 GR +GR GR:0060373 gle2 PO:0009009 GR_ref:6368 IMP A globular embryo-2 gene taxon:4527 20040602 GR +GR GR:0060374 gle3 PO:0009009 GR_ref:6368 IMP A globular embryo-3 gene taxon:4527 20040602 GR +GR GR:0060586 orl1 PO:0020032 GR_ref:1477 IMP A organless embryo-1 gene taxon:4527 20040602 GR +GR GR:0060586 orl1 PO:0020031 GR_ref:1477 IMP A organless embryo-1 gene taxon:4527 20040602 GR +GR GR:0060722 ral1 PO:0020031 GR_ref:1477 IMP A radicleless-1 gene taxon:4527 20040602 GR +GR GR:0060722 ral1 PO:0020129 GR_ref:1477 IMP A radicleless-1 gene taxon:4527 20040602 GR +GR GR:0060734 re1 PO:0009009 GR_ref:6103 IMP A reduced embryo-1 gene taxon:4527 20040602 GR +GR GR:0060735 re2 PO:0009009 GR_ref:6103 IMP A reduced embryo-2 gene taxon:4527 20040602 GR +GR GR:0060736 re3 PO:0009009 GR_ref:6103 IMP A reduced embryo-3 gene taxon:4527 20040602 GR +GR GR:0060879 shl1 PO:0020036 GR_ref:6079 IMP A shootless-1 sh1 gene taxon:4527 20040602 GR +GR GR:0060879 shl1 PO:0020033 GR_ref:6079 IMP A shootless-1 sh1 gene taxon:4527 20040602 GR +GR GR:0060880 shl2 PO:0009009 GR_ref:6079 IMP A shootless-2 sh2 gene taxon:4527 20040602 GR +GR GR:0060881 shl3 PO:0020036 GR_ref:6079 IMP A shootless-3 sh3 gene taxon:4527 20040602 GR +GR GR:0060881 shl3 PO:0020033 GR_ref:6079 IMP A shootless-3 sh3 gene taxon:4527 20040602 GR +GR GR:0060882 shl4 PO:0009009 GR_ref:6079 IMP A shootless-4 sh4 gene taxon:4527 20040602 GR +GR GR:0060883 sho1 PO:0009009 GR_ref:6102 IMP A shoot organization-1 gene taxon:4527 20040602 GR +GR GR:0060884 sho2 PO:0009009 GR_ref:6102 IMP A shoot organization-2 gene taxon:4527 20040602 GR +GR GR:0060890 spt1 PO:0009009 GR_ref:6103 IMP A shoot position-1 shp1 gene taxon:4527 20040602 GR +GR GR:0060992 vep1 PO:0009009 GR_ref:1477 IMP A variable embryo phenotypes-1 odm9 gene taxon:4527 20040602 GR +GR GR:0060993 vep2 PO:0009009 GR_ref:1477 IMP A variable embryo phenotypes-2 odm11 gene taxon:4527 20040602 GR +GR GR:0060993 vep2 PO:0020031 GR_ref:1477 IMP A variable embryo phenotypes-2 odm11 gene taxon:4527 20040602 GR +GR GR:0060994 vep3 PO:0009009 GR_ref:1477 IMP A variable embryo phenotypes-3 qdm18 gene taxon:4527 20040602 GR +GR GR:0060994 vep3 PO:0020031 GR_ref:1477 IMP A variable embryo phenotypes-3 qdm18 gene taxon:4527 20040602 GR +GR GR:0061065 sho3 PO:0009009 GR_ref:6102 IMP A shoot organization-3 gene taxon:4527 20040602 GR diff --git a/po-associations/po_gene_association.gramene_oryza b/po-associations/po_gene_association.gramene_oryza new file mode 100644 index 0000000..b084eb3 --- /dev/null +++ b/po-associations/po_gene_association.gramene_oryza @@ -0,0 +1,46 @@ +GR GR:0060019 agr1 PO:0009005 GR_ref:1477 IMP A agravitropism-1 gene taxon:4527 20040602 GR +GR GR:0060154 [cms-Kalinga-I] PO:0009005 GR_ref:5870 IMP A Cytoplasmic controlled cold tolerance gene taxon:4527 20040602 GR +GR GR:0060175 crl1 PO:0003008 GR_ref:6082 IMP A crown rootless-1 gene taxon:4527 20040602 GR +GR GR:0060176 crl2 PO:0003008 GR_ref:6082 IMP A crown rootless-2 gene taxon:4527 20040602 GR +GR GR:0061068 rrl1 PO:0009005 GR_ref:6870 IMP A reduced root length-1 gene taxon:4527 20040602 GR +GR GR:0061069 rrl2 PO:0009005 GR_ref:6870 IMP A reduced root length-2 gene taxon:4527 20040602 GR +GR GR:0060019 agr1 PO:0009009 GR_ref:1477 IMP A agravitropism-1 gene taxon:4527 20040602 GR +GR GR:0060054 An7 PO:0009009 GR_ref:5859 IMP A Awn-7 gene taxon:4527 20040602 GR +GR GR:0060057 apd1 PO:0020110 GR_ref:1477 IMP A apical displacement-1 gene taxon:4527 20040602 GR +GR GR:0060057 apd1 PO:0020110 GR_ref:6103 IMP A apical displacement-1 gene taxon:4527 20040602 GR +GR GR:0060057 apd1 PO:0020033 GR_ref:6103 IMP A apical displacement-1 gene taxon:4527 20040602 GR +GR GR:0060057 apd1 PO:0020032 GR_ref:6103 IMP A apical displacement-1 gene taxon:4527 20040602 GR +GR GR:0060057 apd1 PO:0020031 GR_ref:6103 IMP A apical displacement-1 gene taxon:4527 20040602 GR +GR GR:0060142 cle1 PO:0009009 GR_ref:6103 IMP A club-shaped embryo-1 gene taxon:4527 20040602 GR +GR GR:0060182 Dhl1 PO:0009009 GR_ref:5587 IMP A Dominant hybrid lethal-1 "D1, Da, Dominant lethal from O. longistaminata" gene taxon:4527 20040602 GR +GR GR:0060182 Dhl1 PO:0009009 GR_ref:5546 IMP A Dominant hybrid lethal-1 "D1, Da, Dominant lethal from O. longistaminata" gene taxon:4527 20040602 GR +GR GR:0060183 Dhl2 PO:0009009 GR_ref:5587 IMP A Dominant hybrid lethal-2 "D2, Db, Dominant lethal from O. sativa" gene taxon:4527 20040602 GR +GR GR:0060183 Dhl2 PO:0009009 GR_ref:5546 IMP A Dominant hybrid lethal-2 "D2, Db, Dominant lethal from O. sativa" gene taxon:4527 20040602 GR +GR GR:0060238 dp1 PO:0009009 GR_ref:3019 IMP A depressed palea-1 pa gene taxon:4527 20040602 GR +GR GR:0060292 eml1 PO:0009009 GR_ref:5606 IMP A embryoless-1 gene taxon:4527 20040602 GR +GR GR:0060362 ge PO:0020110 GR_ref:3899 IMP A giant embryo ge1 gene taxon:4527 20040602 GR +GR GR:0060372 gle1 PO:0009009 GR_ref:6368 IMP A globular embryo-1 gene taxon:4527 20040602 GR +GR GR:0060373 gle2 PO:0009009 GR_ref:6368 IMP A globular embryo-2 gene taxon:4527 20040602 GR +GR GR:0060374 gle3 PO:0009009 GR_ref:6368 IMP A globular embryo-3 gene taxon:4527 20040602 GR +GR GR:0060586 orl1 PO:0020032 GR_ref:1477 IMP A organless embryo-1 gene taxon:4527 20040602 GR +GR GR:0060586 orl1 PO:0020031 GR_ref:1477 IMP A organless embryo-1 gene taxon:4527 20040602 GR +GR GR:0060722 ral1 PO:0020031 GR_ref:1477 IMP A radicleless-1 gene taxon:4527 20040602 GR +GR GR:0060722 ral1 PO:0020129 GR_ref:1477 IMP A radicleless-1 gene taxon:4527 20040602 GR +GR GR:0060734 re1 PO:0009009 GR_ref:6103 IMP A reduced embryo-1 gene taxon:4527 20040602 GR +GR GR:0060735 re2 PO:0009009 GR_ref:6103 IMP A reduced embryo-2 gene taxon:4527 20040602 GR +GR GR:0060736 re3 PO:0009009 GR_ref:6103 IMP A reduced embryo-3 gene taxon:4527 20040602 GR +GR GR:0060879 shl1 PO:0020036 GR_ref:6079 IMP A shootless-1 sh1 gene taxon:4527 20040602 GR +GR GR:0060879 shl1 PO:0020033 GR_ref:6079 IMP A shootless-1 sh1 gene taxon:4527 20040602 GR +GR GR:0060880 shl2 PO:0009009 GR_ref:6079 IMP A shootless-2 sh2 gene taxon:4527 20040602 GR +GR GR:0060881 shl3 PO:0020036 GR_ref:6079 IMP A shootless-3 sh3 gene taxon:4527 20040602 GR +GR GR:0060881 shl3 PO:0020033 GR_ref:6079 IMP A shootless-3 sh3 gene taxon:4527 20040602 GR +GR GR:0060882 shl4 PO:0009009 GR_ref:6079 IMP A shootless-4 sh4 gene taxon:4527 20040602 GR +GR GR:0060883 sho1 PO:0009009 GR_ref:6102 IMP A shoot organization-1 gene taxon:4527 20040602 GR +GR GR:0060884 sho2 PO:0009009 GR_ref:6102 IMP A shoot organization-2 gene taxon:4527 20040602 GR +GR GR:0060890 spt1 PO:0009009 GR_ref:6103 IMP A shoot position-1 shp1 gene taxon:4527 20040602 GR +GR GR:0060992 vep1 PO:0009009 GR_ref:1477 IMP A variable embryo phenotypes-1 odm9 gene taxon:4527 20040602 GR +GR GR:0060993 vep2 PO:0009009 GR_ref:1477 IMP A variable embryo phenotypes-2 odm11 gene taxon:4527 20040602 GR +GR GR:0060993 vep2 PO:0020031 GR_ref:1477 IMP A variable embryo phenotypes-2 odm11 gene taxon:4527 20040602 GR +GR GR:0060994 vep3 PO:0009009 GR_ref:1477 IMP A variable embryo phenotypes-3 qdm18 gene taxon:4527 20040602 GR +GR GR:0060994 vep3 PO:0020031 GR_ref:1477 IMP A variable embryo phenotypes-3 qdm18 gene taxon:4527 20040602 GR +GR GR:0061065 sho3 PO:0009009 GR_ref:6102 IMP A shoot organization-3 gene taxon:4527 20040602 GR