From: elserj <elserj@localhost>
Date: Tue, 13 Dec 2011 21:05:27 +0000 (+0000)
Subject: Make sure in alphabetical order and add new species
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=9f60e57bea2c7d0a9839a2154aa600e291061dfd;p=old-jaiswallab-svn%2F.git

Make sure in alphabetical order and add new species

svn path=/; revision=221
---

diff --git a/interactome_scripts/find_species.pl b/interactome_scripts/find_species.pl
index 0828d95..e1e25b4 100755
--- a/interactome_scripts/find_species.pl
+++ b/interactome_scripts/find_species.pl
@@ -71,12 +71,12 @@ sub find_species {
 		$temp = "Mimulus_guttatus";
 	}elsif ($temp =~ /Mus\_musculus/) {
 		$temp = "Mus_musculus";
+	}elsif ($temp =~ /Nectria\_haematococca/) {
+		$temp = "Nectria_haematococca";
 	}elsif ($temp =~ /Neurospora/) {
 		$temp = "Neurospora_crassa";
 	}elsif ($temp =~ /Nostoc/) {
 		$temp = "Nostoc_punctiforme";
-	}elsif ($temp =~ /Nectria\_haematococca/) {
-		$temp = "Nectria_haematococca";
 	}elsif ($temp =~ /Oryza\_sativa/) {
 		$temp = "Oryza_sativa";
 	}elsif ($temp =~ /Pediculus/) {
@@ -220,12 +220,12 @@ sub find_gene {
 	}elsif ($species eq "Mus_musculus") {
 		my ($protein,$type,$chrom,$gene_id,$transcript) = split(/\s/,$gene_header);
 		$gene = $protein;
-	}elsif ($species eq "Neurospora_crassa") {
-		my ($transcript,$gene_id,$temp) = split(/\s\|\s/,$gene_header);
-		$gene = $transcript;
 	}elsif ($species eq "Nectria_haematococca") {
 		my ($source, $spec, $int_id, $gene_id) = split(/\|/, $gene_header);
 		$gene = $gene_id;
+	}elsif ($species eq "Neurospora_crassa") {
+		my ($transcript,$gene_id,$temp) = split(/\s\|\s/,$gene_header);
+		$gene = $transcript;
 	}elsif ($species eq "Nostoc_punctiforme") {
 		my ($temp,$transcript,$source,$gene_id,$func) = split(/\|/, $gene_header);
 		$gene = $transcript;
@@ -340,8 +340,8 @@ sub all_species_array {
 	push (@spec_array, "Medicago_truncatula");
 	push (@spec_array, "Mimulus_guttatus");
 	push (@spec_array, "Mus_musculus");
-	push (@spec_array, "Neurospora_crassa");
 	push (@spec_array, "Nectria_haematococca");
+	push (@spec_array, "Neurospora_crassa");
 	push (@spec_array, "Nostoc_punctiforme");
 	push (@spec_array, "Oryza_sativa");
 	push (@spec_array, "Pediculus_humanus");