From: elserj <elserj@localhost>
Date: Wed, 8 Sep 2010 21:04:22 +0000 (+0000)
Subject: Changed the split for C.elegans since the tab in the original fasta file messes up... 
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=aa04ffc2480ca11ff3140739044ba953134dd737;p=old-jaiswallab-svn%2F.git

Changed the split for C.elegans since the tab in the original fasta file messes up formatdb

svn path=/; revision=33
---

diff --git a/interactome_scripts/find_species.pl b/interactome_scripts/find_species.pl
index 77183d3..9deb175 100755
--- a/interactome_scripts/find_species.pl
+++ b/interactome_scripts/find_species.pl
@@ -110,7 +110,7 @@ sub find_gene {
 		my ($name,$gene_id,$chrom,$isomer) = split(/\|/, $gene_header);
 		$gene = $isomer;
 	}elsif ($species eq "Caenorhabditis_elegans") {
-		my ($locus_id,$unknown,$gene_id,$temp) = split(/\s+/, $gene_header);
+		my ($locus_id,$unknown,$gene_id,$temp) = split(/\|/, $gene_header);
 		$gene = $gene_id; #???
 	}elsif ($species eq "Carica_papaya") {
 		my $supercontig = $gene_header;