From: cooperl Date: Thu, 31 Dec 2015 00:52:19 +0000 (+0000) Subject: -commented out lines with missing data. X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=aae0d93b607e350c2436ed28f4eb229e2879a94c;p=associations%2F.git -commented out lines with missing data. svn path=/; revision=615 --- diff --git a/to-associations/Test_PPPP_TO/TO_IMP_gene_G.max.assoc b/to-associations/Test_PPPP_TO/TO_IMP_gene_G.max.assoc index c5b4ac2..569a3a7 100644 --- a/to-associations/Test_PPPP_TO/TO_IMP_gene_G.max.assoc +++ b/to-associations/Test_PPPP_TO/TO_IMP_gene_G.max.assoc @@ -12,13 +12,13 @@ SoyBase Glyma06g18890.1 RS2 enzyme activity trait TO:0000599 PMID: 25774204 IMP SoyBase Glyma06g18890.1 RS1-2 raffinose content TO:0006004 PMID: 25774204 IMP T Glyma06g18890.1 Seed raffinose concentration gene taxon:3847 20150717 Ethan Johnson SoyBase Glyma06g18890.1 RS1-2 enzyme activity trait TO:0000599 PMID: 25774204 IMP Glyma06g18890.1 Seed raffinose synthase activity reduced gene taxon:3847 20150717 Ethan Johnson SoyBase Glyma06g19820 AMDH2 BADH2 enzyme activity trait TO:0000599 PMID: 25774204 IMP T Glyma06g19820 Seed amino aldehyde dehydrogenase activity reduced gene taxon:3847 20150717 Ethan Johnson -SoyBase Glyma06g19820 AMDH2 BADH2 PMID: 25774204 IMP Glyma06g19820 Seed 2-acetyl-1-pyroline conc. Increased gene taxon:3847 20150717 Ethan Johnson +!SoyBase Glyma06g19820 AMDH2 BADH2 PMID: 25774204 IMP Glyma06g19820 Seed 2-acetyl-1-pyroline conc. Increased gene taxon:3847 20150717 Ethan Johnson !SoyBase Glyma06g21920 T PMID: 25774204 IMP Glyma06g21920 Gray pubescence gene taxon:3847 20150717 Ethan Johnson !SoyBase Glyma06g21920 T PMID: 25774204 IMP Glyma06g21920 tan hilum gene taxon:3847 20150717 Ethan Johnson SoyBase Glyma06g23026 E1-1 photoperiod-sensitive flowering time trait TO:0000934 PMID: 25774204 IMP T Glyma06g23026 Early flowering under long days gene taxon:3847 20150717 Ethan Johnson SoyBase Glyma06g23026 E1-1 photoperiod-sensitive flowering time trait TO:0000934 PMID: 25774204 IMP T Glyma06g23026 Photoperiod insensitivity gene taxon:3847 20150717 Ethan Johnson SoyBase Glyma08g06630 ANR1 enzyme activity trait TO:0000599 PMID: 25774204 IMP T Glyma08g06630 Anthocyanin Reductase activitiy reduced gene taxon:3847 20150717 Ethan Johnson -SoyBase Glyma08g06630 ANR1 PMID: 25774204 IMP Glyma08g06630 Epicatechin conc. Increased gene taxon:3847 20150717 Ethan Johnson +!SoyBase Glyma08g06630 ANR1 PMID: 25774204 IMP Glyma08g06630 Epicatechin conc. Increased gene taxon:3847 20150717 Ethan Johnson SoyBase Glyma08g08970 Eu3-1 enzyme activity trait TO:0000599 PMID: 25774204 IMP T Glyma08g08970 whole plant urease activity gene taxon:3847 20150717 Ethan Johnson !SoyBase Glyma09g36983 PMID: 25774204 IMP Glyma09g36983 Brown hilum gene taxon:3847 20150717 Ethan Johnson SoyBase Glyma09g36983 seed coat color TO:0000190 PMID: 25774204 IMP T Glyma09g36983 Brown seed coat color gene taxon:3847 20150717 Ethan Johnson @@ -38,11 +38,11 @@ SoyBase Glyma16g04830 GmFT5-A photoperiod-sensitive flowering time trait TO:0000 SoyBase Glyma16g04830 GmFT5-A flowering time trait TO:0002616 PMID: 25774204 IMP T Glyma16g04830 Early flowering gene taxon:3847 20150717 Ethan Johnson SoyBase Glyma16g26660 GmFT2-A photoperiod-sensitive flowering time trait TO:0000934 PMID: 25774204 IMP T Glyma16g26660 Photoperiod insensitivity gene taxon:3847 20150717 Ethan Johnson SoyBase Glyma16g26660 GmFT2-A flowering time trait TO:0002616 PMID: 25774204 IMP T Glyma16g26660 Early flowering gene taxon:3847 20150717 Ethan Johnson -SoyBase Glyma18g02210 MIPS1 PMID: 25774204 IMP Glyma18g02210 emergence reduced gene taxon:3847 20150717 Ethan Johnson +!SoyBase Glyma18g02210 MIPS1 PMID: 25774204 IMP Glyma18g02210 emergence reduced gene taxon:3847 20150717 Ethan Johnson SoyBase Glyma18g06950 GmFAD3-3 oleic acid content TO:0005002 PMID: 25774204 IMP T Glyma18g06950 High seed oleic acid content gene taxon:3847 20150717 Ethan Johnson !SoyBase Glyma19g35230 GmLPA1-2 PMID: 25774204 IMP Glyma19g35230 low phytic acid concentration in seeds gene taxon:3847 20150717 Ethan Johnson SoyBase Glyma19g41210 E3-1 flowering time trait TO:0002616 PMID: 25774204 IMP T Glyma19g41210 Early flowering gene taxon:3847 20150717 Ethan Johnson -!SoyBase Glyma19g41210 E3-1 PMID: 25774204 IMP Glyma19g41210 Reduced far-red photo-reception gene taxon:3847 20150717 Ethan Johnson +!SoyBase Glyma19g41210 E3-1 PMSID: 25774204 IMP Glyma19g41210 Reduced far-red photo-reception gene taxon:3847 20150717 Ethan Johnson SoyBase Glyma20g22160 PhyA2 photoperiod-sensitive flowering time trait TO:0000934 PMID: 25774204 IMP T Glyma20g22160 Photoperiod insensitivity gene taxon:3847 20150720 Ethan Johnson SoyBase Glyma20g22160 PhyA2 photoperiod-sensitive flowering time trait TO:0000934 PMID: 25774204 IMP T Glyma20g22160 Late flowering in short day gene taxon:3847 20150720 Ethan Johnson SoyBase Glyma20g24530 GmFAD2-2 oleic acid content TO:0005002 PMID: 25774204 IMP T Glyma20g24530 High seed oleic acid content gene taxon:3847 20150720 Ethan Johnson diff --git a/to-associations/Test_PPPP_TO/TO_IMP_gene_Z.mays.assoc b/to-associations/Test_PPPP_TO/TO_IMP_gene_Z.mays.assoc index 28810e4..826f755 100644 --- a/to-associations/Test_PPPP_TO/TO_IMP_gene_Z.mays.assoc +++ b/to-associations/Test_PPPP_TO/TO_IMP_gene_Z.mays.assoc @@ -26,7 +26,7 @@ MaizeGDB 12028 ae1 wrinkled seed TO:0000718 PMID:21423772 IMP T GRMZM2G032628 k MaizeGDB 12029 afd1 anther shape TO:0000214 PMID:21423772 IMP T GRMZM2G059037 Anthers shriveled Gene taxon:4577 20150527 Ethan Johnson MaizeGDB 12029 afd1 male sterility TO:0000437 PMID:21423772 IMP T GRMZM2G059037 Male sterile Gene taxon:4577 20150527 Ethan Johnson MaizeGDB 12029 afd1 pollen free TO:0000245 PMID:21423772 IMP T GRMZM2G059037 Pollen absent or aborted. Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12048 an1 PMID: 21423772 IMP GRMZM2G081554 Producing both bisexual and male flowers on the same plant. Synonym: andromonoecious. Gene taxon:4577 20150527 Ethan Johnson +!MaizeGDB 12048 an1 PMID: 21423772 IMP GRMZM2G081554 Producing both bisexual and male flowers on the same plant. Synonym: andromonoecious. Gene taxon:4577 20150527 Ethan Johnson MaizeGDB 12048 an1 flower development trait TO:0000622 PMID: 21423772 IMP T GRMZM2G081554 Ear florets are hermaphroditic; most easily observed in unfertilized ear. Gene taxon:4577 20150527 Ethan Johnson MaizeGDB 12048 an1 internode length TO:0000145 PMID: 21423772 IMP T GRMZM2G081554 internode elongation reduced Gene taxon:4577 20150527 Ethan Johnson MaizeGDB 12048 an1 leaf length TO:0000135 PMID: 21423772 IMP T GRMZM2G081554 short leaves Gene taxon:4577 20150527 Ethan Johnson @@ -41,17 +41,17 @@ MaizeGDB 12065 b1 anthocyanin content TO:0000071 PMID: 21423772 IMP T GRMZM2G17 MaizeGDB 12065 b1 anthocyanin content TO:0000071 PMID: 21423772 IMP T GRMZM2G172795 blotches of anthocyanin pigmentation due to cell to cell variability in the levels of anthocyanin production. Gene taxon:4577 20150616 Ethan Johnson MaizeGDB 12065 b1 stem color TO:0000056 PMID: 21423772 IMP T GRMZM2G172795 striped stems Gene taxon:4577 20150616 Ethan Johnson MaizeGDB 12065 b1 variegated leaf TO:0000069 PMID: 21423772 IMP T GRMZM2G172795 striped leaves Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12070 bd1 PMID: 21423772 IMP GRMZM2G307119 pistils abort, no silks Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12070 bd1 PMID: 21423772 IMP GRMZM2G307119 silks absent Gene taxon:4577 20150529 Ethan Johnson +!MaizeGDB 12070 bd1 PMID: 21423772 IMP GRMZM2G307119 pistils abort, no silks Gene taxon:4577 20150529 Ethan Johnson! +!MaizeGDB 12070 bd1 PMID: 21423772 IMP GRMZM2G307119 silks absent Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12070 bd1 fascicled ear TO:0000715 PMID: 21423772 IMP T GRMZM2G307119 ear is branched Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12077 bk2 leaf shattering TO:0000108 PMID: 17932309 IMP T GRMZM2G109326 leaves shatter after moderate winds Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12077 bk2 plant structure anatomy and morphology trait TO:0000839 PMID: 17932309 IMP T GRMZM2G109326 brittle plant parts after 4-leaf stage Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12079 bm1 PMID: 21423772 IMP GRMZM5G844562 brown pigment in vascular bundles of the sheath, midribs, and blades Gene taxon:4577 20150529 Ethan Johnson +!MaizeGDB 12079 bm1 PMID: 21423772 IMP GRMZM5G844562 brown pigment in vascular bundles of the sheath, midribs, and blades Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12079 bm1 cob color TO:0000924 PMID: 21423772 IMP T GRMZM5G844562 brown pigment in vascular bundles of cob Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12079 bm1 leaf midrib color TO:0000720 PMID: 21423772 IMP T GRMZM5G844562 brown pigment first visible as a reddish-brown pigmentation of the midrib at the 4-6 leaf stage. Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12079 bm1 lignin content TO:0000731 PMID: 21423772 IMP T GRMZM5G844562 The amount of lignin in the leaves is reduced Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12079 bm1 root color TO:0000065 PMID: 21423772 IMP T GRMZM5G844562 brown pigment in vascular bundles of roots Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12081 bm3 PMID: 21423772 IMP AC196475.3_FG004 brown pigment in vascular bundles of the sheath, midribs, and blades Gene taxon:4577 20150529 Ethan Johnson +!MaizeGDB 12081 bm3 PMID: 21423772 IMP AC196475.3_FG004 brown pigment in vascular bundles of the sheath, midribs, and blades Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12081 bm3 cob color TO:0000924 PMID: 21423772 IMP T AC196475.3_FG004 brown pigment in vascular bundles of cob Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12081 bm3 leaf midrib color TO:0000720 PMID: 21423772 IMP T AC196475.3_FG004 brown pigment first visible as a reddish-brown pigmentation of the midrib at the 4-6 leaf stage. Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12081 bm3 lignin content TO:0000731 PMID: 21423772 IMP T AC196475.3_FG004 The amount of lignin in the leaves is reduced Gene taxon:4577 20150529 Ethan Johnson @@ -62,7 +62,7 @@ MaizeGDB 12091 T1 endosperm color TO:0000487 PMID: 21423772 IMP T GRMZM2G144081 MaizeGDB 12091 T1 fruit shape TO:0002628 PMID: 21423772 IMP T GRMZM2G144081 mature kernel angular Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12091 T1 shrunken endosperm TO:0000100 PMID: 21423772 IMP T GRMZM2G144081 endosperm collapsed Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12091 T1 shrunken endosperm TO:0000100 PMID: 21423772 IMP T GRMZM2G144081 mature kernel collapsed Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12092 T2 PMID: 25600571 IMP GRMZM2G068506 No mRNA is produced from the T2 gene Gene taxon:4577 20150529 Ethan Johnson +!MaizeGDB 12092 T2 PMID: 25600571 IMP GRMZM2G068506 No mRNA is produced from the T2 gene Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12098 bz1 aleurone layer color TO:0000943 PMID: 25201957 IMP T GRMZM2G165390 Aleurone color is bronze Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12098 bz1 fluorescence related trait TO:0012006 PMID: 25201957 IMP T GRMZM2G165390 Shedding tassels viewed under UV light show bright yellow fluorescence in the anthers Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12098 bz1 plant color TO:0000708 PMID: 25201957 IMP T GRMZM2G165390 Whole plant color can be bronze Gene taxon:4577 20150529 Ethan Johnson @@ -77,15 +77,15 @@ MaizeGDB 12115 cg1 ear length TO:0000431 PMID: 21987797 IMP T GRMZM2G022489 hig MaizeGDB 12115 cg1 leaf width TO:0000370 PMID: 21987797 IMP T GRMZM2G022489 narrow leaves Gene taxon:4577 20150616 Ethan Johnson MaizeGDB 12115 cg1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID: 21987797 IMP T GRMZM2G022489 highly reduced tassel Gene taxon:4577 20150616 Ethan Johnson MaizeGDB 12115 cg1 tillering ability TO:0000329 PMID: 21987797 IMP T GRMZM2G022489 extreme tillering Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12141 d3 IMP GRMZM2G093195 andromonoecious Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 12141 d3 IMP GRMZM2G093195 andromonoecious Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12141 d3 internode length TO:0000145 PMID:21423772 IMP T GRMZM2G093195 internode elongation reduced Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12141 d3 leaf height TO:0000541 PMID:21423772 IMP T GRMZM2G093195 short leaves Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12141 d3 leaf size TO:0002637 PMID:21423772 IMP T GRMZM2G093195 compact leaves Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12141 d3 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G093195 broad leaves Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12141 d3 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G093195 The plant is shorter Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12143 d8 PMID: 21423772 IMP GRMZM2G144744 Plant does not reposnd to giberellin Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12143 d8 PMID: 21423772 IMP GRMZM2G144744 Producing both bisexual and male flowers on the same plant. Synonym: andromonoecious. Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12143 d8 PMID: 21423772 IMP GRMZM2G144744 anthers in the ears Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 12143 d8 PMID: 21423772 IMP GRMZM2G144744 Plant does not reposnd to giberellin Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 12143 d8 PMID: 21423772 IMP GRMZM2G144744 Producing both bisexual and male flowers on the same plant. Synonym: andromonoecious. Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 12143 d8 PMID: 21423772 IMP GRMZM2G144744 anthers in the ears Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12143 d8 floret anatomy and morphology trait TO:0000274 PMID: 21423772 IMP T GRMZM2G144744 Ear florets are hermaphroditic; most easily observed in unfertilized ear. Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12143 d8 leaf height TO:0000541 PMID: 21423772 IMP T GRMZM2G144744 short leaves Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12143 d8 leaf size TO:0002637 PMID: 21423772 IMP T GRMZM2G144744 compact leaves Gene taxon:4577 20150618 Ethan Johnson @@ -96,8 +96,8 @@ MaizeGDB 12143 d8 plant height TO:0000207 PMID: 21423772 IMP T GRMZM2G144744 wh MaizeGDB 12143 d8 tassel branch number TO:0000813 PMID: 21423772 IMP T GRMZM2G144744 tassel branches few Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12143 d8 tassel inflorescence circumference TO:0000796 PMID: 21423772 IMP T GRMZM2G144744 compact tassel Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12143 d8 tiller number TO:0000346 PMID: 21423772 IMP T GRMZM2G144744 Plant produces many lateral branches (tillers) at its base. Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12144 d9 PMID: 21423772 IMP GRMZM2G024973 andromonoecious Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12144 d9 PMID: 21423772 IMP GRMZM2G024973 anthers in the ears Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 12144 d9 PMID: 21423772 IMP GRMZM2G024973 andromonoecious Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 12144 d9 PMID: 21423772 IMP GRMZM2G024973 anthers in the ears Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12144 d9 leaf height TO:0000541 PMID: 21423772 IMP T GRMZM2G024973 short leaves Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12144 d9 leaf size TO:0002637 PMID: 21423772 IMP T GRMZM2G024973 compact leaves Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12144 d9 leaf width TO:0000370 PMID: 21423772 IMP T GRMZM2G024973 broad leaves Gene taxon:4577 20150618 Ethan Johnson @@ -117,7 +117,7 @@ MaizeGDB 12197 du1 sugary endosperm TO:0000099 PMID:21423772 IMP T GRMZM2G14139 MaizeGDB 12197 du1 wrinkled seed TO:0000718 PMID:21423772 IMP T GRMZM2G141399 kernel is wrinkled, hard and translucent when dry Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 1219936 spi1 kernel number per ear TO:0000937 PMID:21423772 IMP T GRMZM2G025222 The number of kernals on the cob is reduced Gene taxon:4577 20150619 Austin Meier MaizeGDB 1219936 spi1 tassel branch number TO:0000813 PMID:21423772 IMP T GRMZM2G025222 number of tassel spikelets greatly reduced Gene taxon:4577 20150619 Austin Meier -MaizeGDB 12218 et1 PMID:21423772 IMP GRMZM2G157574 surface of kernel strewn with small pits or indentations Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 12218 et1 PMID:21423772 IMP GRMZM2G157574 surface of kernel strewn with small pits or indentations Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12218 et1 enzyme activity trait TO:0000599 PMID:21423772 IMP T GRMZM2G157574 starch debranching enzyme I absent in developing endosperm Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12218 et1 floury endosperm TO:0000104 PMID:21423772 IMP T GRMZM2G157574 interior floury Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12218 et1 sugary endosperm TO:0000099 PMID:21423772 IMP T GRMZM2G157574 kernel is sweet at milk stage; typical of su1 Gene taxon:4577 20150618 Ethan Johnson @@ -146,19 +146,19 @@ MaizeGDB 12328 hm2 fungal disease resistance TO:0000439 PMID: 24847713 IMP T GR MaizeGDB 1232891 wtf1 leaf color TO:0000326 PMID: 25725436 IMP T GRMZM2G403797 Seedling leaves are white. Gene taxon:4577 20150622 MaizeGDB 1232893 why1 leaf color TO:0000326 PMID: 25599833 IMP T GRMZM2G155662 Seedling leaves are white. Gene taxon:4577 20150622 MaizeGDB 1232899 ppr5 leaf color TO:0000326 PMID: 21423772 IMP T GRMZM2G025409 Seedling leaves are white. Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 1233612 emp4 PMID: 21423772 IMP GRMZM2G092198 loose pericarp Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 1233612 emp4 PMID: 21423772 IMP GRMZM2G092198 small embryo Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 1233612 emp4 PMID: 21423772 IMP GRMZM2G092198 loose pericarp Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 1233612 emp4 PMID: 21423772 IMP GRMZM2G092198 small embryo Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 1233612 emp4 fruit anatomy and morphology trait TO:0002629 PMID: 21423772 IMP T GRMZM2G092198 kernel is angular Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 1233612 emp4 shrunken endosperm TO:0000100 PMID: 21423772 IMP T GRMZM2G092198 endosperm much reduced Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 1233612 emp4 shrunken endosperm TO:0000100 PMID: 21423772 IMP T GRMZM2G092198 kernel is collapsed Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12340 ig1 PMID:21423772 IMP GRMZM2G118250 aborted kernel Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12340 ig1 PMID:21423772 IMP GRMZM2G118250 kernel with loose pericarp Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 12340 ig1 PMID:21423772 IMP GRMZM2G118250 aborted kernel Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 12340 ig1 PMID:21423772 IMP GRMZM2G118250 kernel with loose pericarp Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12340 ig1 fertility related trait TO:0000420 PMID:21423772 IMP T GRMZM2G118250 Male flowers have reduced fertility Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12340 ig1 fruit anatomy and morphology trait TO:0002629 PMID:21423772 IMP T GRMZM2G118250 kernel with loose pericarp Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12340 ig1 seed size TO:0000391 PMID:21423772 IMP T GRMZM2G118250 kernal smaller in size Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12341 ij1 leaf color TO:0000326 PMID: 25725436 IMP T GRMZM2G004583 Seedling leaves are white. Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12341 ij1 variegated leaf TO:0000069 PMID: 25725436 IMP T GRMZM2G004583 Leaf is mostly white, with short, thin, green, longitudinal stripes (in the direction of the lateral veins), Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12352 kn1 PMID: 24218490 IMP GRMZM2G017087 The number of ovules that develop into a seed is reduced Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 12352 kn1 PMID: 24218490 IMP GRMZM2G017087 The number of ovules that develop into a seed is reduced Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12352 kn1 leaf vein anatomy and morphology trait TO:0000820 PMID: 24218490 IMP T GRMZM2G017087 Scattered proliferations of tissue at veins on leaf, leading to a bumpy, irregular appearance. Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12352 kn1 spikelet number TO:0000456 PMID: 24218490 IMP T GRMZM2G017087 number of tassel spikelets greatly reduced Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12352 kn1 sterility or fertility trait TO:0000392 PMID: 24218490 IMP T GRMZM2G017087 pollen nonfunctional Gene taxon:4577 20150618 Ethan Johnson @@ -166,14 +166,14 @@ MaizeGDB 12386 lg1 auricleless TO:0000226 PMID: 25516601 IMP T GRMZM2G036297 au MaizeGDB 12386 lg1 leaf attitude TO:0000824 PMID: 25516601 IMP T GRMZM2G036297 leaves upright Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12387 lg2 auricleless TO:0000226 PMID:21423772 IMP T GRMZM2G060216 auricle of the leaf missing Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12387 lg2 leaf attitude TO:0000824 PMID:21423772 IMP T GRMZM2G060216 leaves upright Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12388 lg3 PMID:21423772 IMP GRMZM2G087741 more ligule Gene taxon:4577 20150619 Ethan Johnson +!MaizeGDB 12388 lg3 PMID:21423772 IMP GRMZM2G087741 more ligule Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12388 lg3 auricleless TO:0000226 PMID:21423772 IMP T GRMZM2G087741 auricle of the leaf missing Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12388 lg3 leaf attitude TO:0000824 PMID:21423772 IMP T GRMZM2G087741 leaves upright Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12389 lg4 auricleless TO:0000226 PMID:21423772 IMP T GRMZM2G094241 auricle of the leaf missing Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12389 lg4 leaf attitude TO:0000824 PMID:21423772 IMP T GRMZM2G094241 leaves upright Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12391 lls1 PMID: 21423772 IMP GRMZM2G339563 Leaves have elliptical lesions Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12391 lls1 PMID: 21423772 IMP GRMZM2G339563 Leaves have round lesions Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12391 lls1 PMID: 21423772 IMP GRMZM2G339563 Premature plant death Gene taxon:4577 20150619 Ethan Johnson +!MaizeGDB 12391 lls1 PMID: 21423772 IMP GRMZM2G339563 Leaves have elliptical lesions Gene taxon:4577 20150619 Ethan Johnson +!MaizeGDB 12391 lls1 PMID: 21423772 IMP GRMZM2G339563 Leaves have round lesions Gene taxon:4577 20150619 Ethan Johnson +!MaizeGDB 12391 lls1 PMID: 21423772 IMP GRMZM2G339563 Premature plant death Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12391 lls1 chlorophyll content TO:0000495 PMID: 21423772 IMP T GRMZM2G339563 Chlorotic leaf lesion Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12391 lls1 leaf necrosis TO:0000652 PMID: 21423772 IMP T GRMZM2G339563 necrotic leaf lesions Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12391 lls1 leaf senescence TO:0000249 PMID: 21423772 IMP T GRMZM2G339563 Premature leaf senescence Gene taxon:4577 20150619 Ethan Johnson @@ -183,7 +183,7 @@ MaizeGDB 12469 na1 plant height TO:0000207 PMID: 22106275 IMP T JN020030.1 shor MaizeGDB 12495 o2 glutinous endosperm TO:0000098 PMID: 23586588 IMP T GRMZM2G015534 endosperm is opaque Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12515 oy1 variegated leaf TO:0000069 PMID: 25725436 IMP T GRMZM2G419806 Normal green along veins (vascular bundles); tissue between the veins is pale green or grayish green, giving the leaf a striped appearance Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12517 p1 style color TO:0000676 PMID: 25250036 IMP T GRMZM2G084799 Silks brown sooner than normal Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12553 pl1 PMID: 21423772 IMP GRMZM2G701063 striped stems Gene taxon:4577 20150619 Ethan Johnson +!MaizeGDB 12553 pl1 PMID: 21423772 IMP GRMZM2G701063 striped stems Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12553 pl1 anthocyanin content TO:0000071 PMID: 21423772 IMP T GRMZM2G701063 blotches of anthocyanin pigmentation due to cell to cell variability in the levels of anthocyanin production. Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12553 pl1 anthocyanin content TO:0000071 PMID: 21423772 IMP T GRMZM2G701063 cell to cell variability in the levels of anthocyanin production. Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12553 pl1 endosperm color TO:0000487 PMID: 21423772 IMP T GRMZM2G701063 Aleuron has blotches of anthocyanin pigmentation Gene taxon:4577 20150619 Ethan Johnson @@ -210,8 +210,8 @@ MaizeGDB 12579 ra3 fascicled ear TO:0000715 PMID: 21423772 IMP T GRMZM2G014729 MaizeGDB 12595 rf2 anther shape TO:0000214 PMID:21423772 IMP T GRMZM2G058675 Anthers shriveled Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12595 rf2 male sterility TO:0000437 PMID:21423772 IMP T GRMZM2G058675 Male sterile Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12595 rf2 pollen free TO:0000245 PMID:21423772 IMP T GRMZM2G058675 Pollen absent or aborted. Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12602 rgd1 IMP GRMZM2G020187 leaf blade absent Gene taxon:4577 20150619 Austin Meier -MaizeGDB 12602 rgd1 PMID: 21423772 IMP GRMZM2G020187 difficulty emerging Gene taxon:4577 20150619 Austin Meier +!MaizeGDB 12602 rgd1 IMP GRMZM2G020187 leaf blade absent Gene taxon:4577 20150619 Austin Meier +!MaizeGDB 12602 rgd1 PMID: 21423772 IMP GRMZM2G020187 difficulty emerging Gene taxon:4577 20150619 Austin Meier MaizeGDB 12602 rgd1 leaf shape TO:0000492 PMID: 21423772 IMP T GRMZM2G020187 seedling leaves divided Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12602 rgd1 leaf width TO:0000370 PMID: 21423772 IMP T GRMZM2G020187 seedling leaves narrow Gene taxon:4577 20150619 Austin Meier MaizeGDB 12602 rgd1 leaf width TO:0000370 PMID: 21423772 IMP T GRMZM2G020187 seedling leaves thread-like Gene taxon:4577 20150619 Austin Meier @@ -231,21 +231,21 @@ MaizeGDB 12665 su2 sugary endosperm TO:0000099 PMID:21423772 IMP T GRMZM2G34855 MaizeGDB 12665 su2 wrinkled seed TO:0000718 PMID:21423772 IMP T GRMZM2G348551 kernel is wrinkled, hard and translucent when dry Gene taxon:4577 20150622 MaizeGDB 12671 tb1 tiller number TO:0000346 PMID: 25909039 IMP T AC233950.1_FG002 Plant produces many lateral branches (tillers) at its base. Gene taxon:4577 20150622 MaizeGDB 12673 te1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID: 21423772 IMP T GRMZM2G085113 abnormality of the tassel Gene taxon:4577 20150622 -MaizeGDB 12690 ts1 PMID: 21423772 IMP GRMZM2G104843 seeds in tassel Gene taxon:4577 20150622 -MaizeGDB 12690 ts1 PMID: 21423772 IMP GRMZM2G104843 silks in tassel Gene taxon:4577 20150622 +!MaizeGDB 12690 ts1 PMID: 21423772 IMP GRMZM2G104843 seeds in tassel Gene taxon:4577 20150622 +!MaizeGDB 12690 ts1 PMID: 21423772 IMP GRMZM2G104843 silks in tassel Gene taxon:4577 20150622 MaizeGDB 12690 ts1 floret anatomy and morphology trait TO:0000274 PMID: 21423772 IMP T GRMZM2G104843 defective floret Gene taxon:4577 20150622 MaizeGDB 12690 ts1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID: 21423772 IMP T GRMZM2G104843 abnormality of the tassel Gene taxon:4577 20150622 -MaizeGDB 12691 ts2 PMID: 21423772 IMP GRMZM2G455809 seeds in tassel Gene taxon:4577 20150622 -MaizeGDB 12691 ts2 PMID: 21423772 IMP GRMZM2G455809 silks in tassel Gene taxon:4577 20150622 +!MaizeGDB 12691 ts2 PMID: 21423772 IMP GRMZM2G455809 seeds in tassel Gene taxon:4577 20150622 +!MaizeGDB 12691 ts2 PMID: 21423772 IMP GRMZM2G455809 silks in tassel Gene taxon:4577 20150622 MaizeGDB 12691 ts2 tassel inflorescence anatomy and morphology trait TO:0000788 PMID: 21423772 IMP T GRMZM2G455809 abnormality of the tassel Gene taxon:4577 20150622 -MaizeGDB 12692 ts4 PMID:21423772 IMP GRMZM5G803935 seeds in tassel Gene taxon:4577 20150622 -MaizeGDB 12692 ts4 PMID:21423772 IMP GRMZM5G803935 silks in tassel Gene taxon:4577 20150622 +!MaizeGDB 12692 ts4 PMID:21423772 IMP GRMZM5G803935 seeds in tassel Gene taxon:4577 20150622 +!MaizeGDB 12692 ts4 PMID:21423772 IMP GRMZM5G803935 silks in tassel Gene taxon:4577 20150622 MaizeGDB 12692 ts4 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM5G803935 abnormality of the tassel Gene taxon:4577 20150622 -MaizeGDB 12694 ts6 PMID:21423772 IMP GRMZM5G862109 seeds in tassel Gene taxon:4577 20150622 -MaizeGDB 12694 ts6 PMID:21423772 IMP GRMZM5G862109 silks in tassel Gene taxon:4577 20150622 +!MaizeGDB 12694 ts6 PMID:21423772 IMP GRMZM5G862109 seeds in tassel Gene taxon:4577 20150622 ! +!MaizeGDB 12694 ts6 PMID:21423772 IMP GRMZM5G862109 silks in tassel Gene taxon:4577 20150622 MaizeGDB 12694 ts6 embryo development trait TO:0000620 PMID:21423772 IMP T GRMZM5G862109 The embryo develops on the wrong side of the kernel Gene taxon:4577 20150622 MaizeGDB 12694 ts6 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM5G862109 abnormality of the tassel Gene taxon:4577 20150622 -MaizeGDB 12696 tu1 PMID: 24980907 IMP NM_001111678.1 kernels completely enclosed in long glumes Gene taxon:4577 20150622 +!MaizeGDB 12696 tu1 PMID: 24980907 IMP NM_001111678.1 kernels completely enclosed in long glumes Gene taxon:4577 20150622 MaizeGDB 12696 tu1 glume anatomy and morphology trait TO:0000869 PMID: 24980907 IMP T NM_001111678.1 tassel glumes coarse Gene taxon:4577 20150622 MaizeGDB 12696 tu1 glume anatomy and morphology trait TO:0000869 PMID: 24980907 IMP T NM_001111678.1 tassel glumes large Gene taxon:4577 20150622 MaizeGDB 12731 vp1 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G133398 kernels germinate while still on the ear Gene taxon:4577 20150622 @@ -254,11 +254,11 @@ MaizeGDB 12733 vp5 vivipary TO:0000619 PMID: 21423772 IMP T GRMZM2G410515 kerne MaizeGDB 12735 vp8 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G010353 kernels germinate while still on the ear Gene taxon:4577 20150622 MaizeGDB 12768 wx1 amylopectin content TO:0000097 PMID:21423772 IMP T GRMZM2G024993 Amylopectin in endosperm. Gene taxon:4577 20150622 MaizeGDB 12768 wx1 amylopectin content TO:0000097 PMID:21423772 IMP T GRMZM2G024993 Amylopectin in pollen. Gene taxon:4577 20150622 -MaizeGDB 133880 mop1 PMID: 24786611 IMP GRMZM2G042443 Reduction of gene silencing Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 133880 mop1 PMID: 24786611 IMP GRMZM2G042443 reduction of small RNAs Gene taxon:4577 20150619 Ethan Johnson +!MaizeGDB 133880 mop1 PMID: 24786611 IMP GRMZM2G042443 Reduction of gene silencing Gene taxon:4577 20150619 Ethan Johnson! +!MaizeGDB 133880 mop1 PMID: 24786611 IMP GRMZM2G042443 reduction of small RNAs Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 223331 les22 variegated leaf necrosis TO:0000070 PMID:21423772 IMP T GRMZM2G044074 necrotic or chlorotic lesions Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 2365883 rel2 kernel number per ear TO:0000937 PMID: 21423772 IMP T GRMZM2G042992 Ear with few kernels if any Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 25017 cr4 PMID: 21423772 IMP GRMZM2G051637 seedling which has an irregular shape Gene taxon:4577 20150617 Ethan Johnson +!MaizeGDB 25017 cr4 PMID: 21423772 IMP GRMZM2G051637 seedling which has an irregular shape Gene taxon:4577 20150617 Ethan Johnson MaizeGDB 25017 cr4 aleurone layer appearance TO:0000944 PMID: 21423772 IMP GRMZM2G051637 irregular-shaped patches of color and non-color in the aleurone tissue with distinct borders Gene taxon:4577 20150617 Ethan Johnson MaizeGDB 25017 cr4 leaf shape TO:0000492 PMID: 21423772 IMP T GRMZM2G051637 leaves crinkled Gene taxon:4577 20150617 Ethan Johnson MaizeGDB 25017 cr4 leaf width TO:0000370 PMID: 21423772 IMP T GRMZM2G051637 leaves broad Gene taxon:4577 20150617 Ethan Johnson @@ -268,35 +268,35 @@ MaizeGDB 25017 cr4 tassel inflorescence anatomy and morphology trait TO:0000788 MaizeGDB 25058 dsc1 pericarp anatomy and morphology trait TO:0000945 PMID: 21423772 IMP chr4:47715993 kernel surface opaque Gene taxon:4577 20150617 Ethan Johnson MaizeGDB 25058 dsc1 pericarp texture TO:0002623 PMID: 21423772 IMP T chr4:47715993 surface of kernel covered with many small irregularities giving it a rough texture Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 25058 dsc1 wrinkled seed TO:0000718 PMID: 21423772 IMP T chr4:47715993 kernel surface like crumpled paper Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 256276 dwf1 PMID:21423772 IMP GRMZM2G057000 andromonoecious Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 256276 dwf1 PMID:21423772 IMP GRMZM2G057000 andromonoecious Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 256276 dwf1 leaf height TO:0000541 PMID:21423772 IMP T GRMZM2G057000 short leaves Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 256276 dwf1 leaf size TO:0002637 PMID:21423772 IMP T GRMZM2G057000 compact leaves Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 256276 dwf1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G057000 broad leaves Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 25995 crp1 seedling cotyledon color TO:0000750 PMID:21423772 IMP T GRMZM2G083950 seedling leaves red fluorescence under long-wave uv Gene taxon:4577 20150616 Ethan Johnson MaizeGDB 25995 crp1 seedling growth and development trait TO:0000949 IMP GRMZM2G083950 seedling dies after endosperm is used up Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 274903 dcd1 PMID: 21423772 IMP GRMZM2G083459 stomata abnormal Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 274903 dcd1 PMID: 21423772 IMP GRMZM2G083459 stomata abnormal Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 274903 dcd1 mitotic cell cycle trait TO:0000730 PMID: 21423772 IMP T GRMZM2G083459 Leaf epidermis cell division asymmetric Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 274903 dcd1 plant cell shape TO:0002682 PMID: 21423772 IMP T GRMZM2G083459 cork cells abnormal Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 274903 dcd1 plant cell shape TO:0002682 PMID: 21423772 IMP T GRMZM2G083459 silica cells abnormal Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 30011 rld1 leaf anatomy and morphology trait TO:0000748 PMID:21423772 IMP T GRMZM2G109987 adaxial traits on the abaxial side of the leaves Gene taxon:4577 20150619 Austin Meier MaizeGDB 30011 rld1 leaf rolling TO:0000085 PMID:21423772 IMP T GRMZM2G109987 leaves are rolled Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 30023 vp10 PMID: 21423772 IMP GRMZM2G067176 seedling leaves stuck together Gene taxon:4577 20150622 -MaizeGDB 30023 vp10 PMID: 21423772 IMP GRMZM2G067176 tassels stuck together Gene taxon:4577 20150622 -MaizeGDB 30023 vp10 PMID: 21423772 IMP GRMZM2G067176 top leaves stuck together Gene taxon:4577 20150622 +!MaizeGDB 30023 vp10 PMID: 21423772 IMP GRMZM2G067176 seedling leaves stuck together Gene taxon:4577 20150622 +!MaizeGDB 30023 vp10 PMID: 21423772 IMP GRMZM2G067176 tassels stuck together Gene taxon:4577 20150622 !! +!MaizeGDB 30023 vp10 PMID: 21423772 IMP GRMZM2G067176 top leaves stuck together Gene taxon:4577 20150622 MaizeGDB 30023 vp10 aleurone layer color TO:0000943 PMID: 21423772 IMP T GRMZM2G067176 Aleurone layer is colored Gene taxon:4577 20150622 MaizeGDB 30023 vp10 seedling vigor TO:0000280 PMID: 21423772 IMP T GRMZM2G067176 seedling dies after endosperm is used up Gene taxon:4577 20150622 MaizeGDB 30023 vp10 vivipary TO:0000619 PMID: 21423772 IMP T GRMZM2G067176 kernels germinate while still on the ear Gene taxon:4577 20150622 -MaizeGDB 308904 fea2 PMID: 23377180 IMP GRMZM2G104925 Ear tip flattened Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 308904 fea2 PMID: 23377180 IMP GRMZM2G104925 Ear tip flattened Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 308904 fea2 ear diameter TO:0000433 PMID: 23377180 IMP T GRMZM2G104925 Ear broadened Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 308904 fea2 fascicled ear TO:0000715 PMID: 23377180 IMP T GRMZM2G104925 Ear meristem overproliferation Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 308904 fea2 kernel row number per ear TO:0000687 PMID: 23377180 IMP T GRMZM2G104925 increase in the number of rows of seeds on the ear; ear floret numbers increased Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 41310 zfl2 inflorescence development trait TO:0000621 PMID: 24381105 IMP T GRMZM2G180190 defective ear Gene taxon:4577 20150622 MaizeGDB 41310 zfl2 tassel inflorescence anatomy and morphology trait TO:0000788 PMID: 24381105 IMP T GRMZM2G180190 abnormality of the tassel Gene taxon:4577 20150622 -MaizeGDB 41343 bde1 PMID:21423772 IMP GRMZM2G160565 multiple silks per floret in ear Gene taxon:4577 20150529 Ethan Johnson +!MaizeGDB 41343 bde1 PMID:21423772 IMP GRMZM2G160565 multiple silks per floret in ear Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 41343 bde1 inflorescence anatomy and morphology trait TO:0000373 PMID:21423772 IMP T GRMZM2G160565 proliferation of irregular growth on ear Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 41343 bde1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM2G160565 silks in the tassel Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 415181 sbe3 leaf senescence duration TO:0012012 PMID: 21508184 IMP T GRMZM2G073054 leaves senesc earleir than normal sibs Gene taxon:4577 20150619 -MaizeGDB 60438 bif2 PMID: 21423772 IMP GRMZM2G171822 ear meristem absent Gene taxon:4577 20150529 Ethan Johnson +!MaizeGDB 60438 bif2 PMID: 21423772 IMP GRMZM2G171822 ear meristem absent Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 60438 bif2 inflorescence branching TO:0000050 PMID: 21423772 IMP T GRMZM2G171822 Inflorescence branches absent Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 60468 dlf1 flowering time trait TO:0002616 PMID:21423772 IMP T GRMZM2G067921 mature plant 7-10 days later in flowering than normal Gene taxon:4577 20150617 Ethan Johnson MaizeGDB 60468 dlf1 node number TO:0000634 PMID:21423772 IMP T GRMZM2G067921 4-6 more nodes and leaves than normal. Gene taxon:4577 20150617 Ethan Johnson @@ -306,18 +306,18 @@ MaizeGDB 60513 rth1 root shape TO:0002710 PMID: 21423772 IMP T GRMZM2G099056 ge MaizeGDB 60515 rth3 root hair length TO:0002665 PMID: 21423772 IMP T GRMZM2G377215 root hair decreased length Gene taxon:4577 20150619 Austin Meier MaizeGDB 60515 rth3 root hair length TO:0002665 PMID: 21423772 IMP T GRMZM2G377215 root hairs fail to elongate Gene taxon:4577 20150619 Austin Meier MaizeGDB 60537 tsh1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID: 21423772 IMP T GRMZM2G325850 abnormality of the tassel Gene taxon:4577 20150622 -MaizeGDB 61077 ns1 PMID: 21423772 IMP GRMZM2G069028 Plants (stems) do not elongate in response to gibberellins. Gene taxon:4577 20150619 Ethan Johnson +!MaizeGDB 61077 ns1 PMID: 21423772 IMP GRMZM2G069028 Plants (stems) do not elongate in response to gibberellins. Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 61077 ns1 internode length TO:0000145 PMID: 21423772 IMP T GRMZM2G069028 internode elongation reduced Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 61077 ns1 leaf width TO:0000370 PMID: 21423772 IMP T GRMZM2G069028 leaves are very narrow along their whole length Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 61077 ns1 plant height TO:0000207 PMID: 21423772 IMP T GRMZM2G069028 Plants are reduced in height Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 61077 ns1 vascular leaf anatomy and morphology trait TO:0000419 PMID: 21423772 IMP T GRMZM2G069028 The margin domain of both blade and sheath is missing Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 61653 si1 PMID:21423772 IMP GRMZM2G139073 multiple silks per floret in ear Gene taxon:4577 20150619 -MaizeGDB 61653 si1 PMID:21423772 IMP GRMZM2G139073 seeds in tassel Gene taxon:4577 20150619 -MaizeGDB 61653 si1 PMID:21423772 IMP GRMZM2G139073 silks in tassel Gene taxon:4577 20150619 -MaizeGDB 64424 gn1 PMID:21423772 IMP GRMZM2G452178 multiple silks per floret in ear Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 64424 gn1 PMID:21423772 IMP GRMZM2G452178 seedling distorted Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 64424 gn1 PMID:21423772 IMP GRMZM2G452178 seedling twisted Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 64424 gn1 PMID:21423772 IMP GRMZM2G452178 silks in the tassel Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 61653 si1 PMID:21423772 IMP GRMZM2G139073 multiple silks per floret in ear Gene taxon:4577 20150619 +!MaizeGDB 61653 si1 PMID:21423772 IMP GRMZM2G139073 seeds in tassel Gene taxon:4577 20150619 +!MaizeGDB 61653 si1 PMID:21423772 IMP GRMZM2G139073 silks in tassel Gene taxon:4577 20150619 +!MaizeGDB 64424 gn1 PMID:21423772 IMP GRMZM2G452178 multiple silks per floret in ear Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 64424 gn1 PMID:21423772 IMP GRMZM2G452178 seedling distorted Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 64424 gn1 PMID:21423772 IMP GRMZM2G452178 seedling twisted Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 64424 gn1 PMID:21423772 IMP GRMZM2G452178 silks in the tassel Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 64424 gn1 internode length TO:0000145 PMID:21423772 IMP T GRMZM2G452178 internode elongation reduced Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 64424 gn1 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G452178 The plant is shorter Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 854977 brk1 plant cell anatomy and morphology trait TO:0002683 PMID: 21423772 IMP T GRMZM5G842058 Leaf blade epidermal cell lobes blocked Gene taxon:4577 20150529 Ethan Johnson @@ -332,12 +332,12 @@ MaizeGDB 870601 sgo1 male sterility TO:0000437 PMID:21423772 IMP T GRMZM2G07408 MaizeGDB 870601 sgo1 pollen abortion type TO:0000218 PMID:21423772 IMP T GRMZM2G074082 Pollen absent or aborted. Gene taxon:4577 20150619 Austin Meier MaizeGDB 871231 pac1 endosperm color TO:0000487 PMID: 21423772 IMP T GRMZM2G058292 Reduced pigmentation in aleurone Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 886495 sal1 aleurone layer anatomy and morphology trait TO:0000942 PMID:21423772 IMP GRMZM2G117935 multiple cell layers in the aleurone tissue Gene taxon:4577 20150622 -MaizeGDB 9017732 cf1 IMP GRMZM2G026117 Leaves develop irregular nonclonal, yellow_green sectors, which leads to an appearance similar to military camouflage. Sectors can turn necrotic. Gene taxon:4577 20150616 Ethan Johnson +!MaizeGDB 9017732 cf1 IMP GRMZM2G026117 Leaves develop irregular nonclonal, yellow_green sectors, which leads to an appearance similar to military camouflage. Sectors can turn necrotic. Gene taxon:4577 20150616 Ethan Johnson MaizeGDB 9018083 vp15 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G121468 kernels germinate while still on the ear Gene taxon:4577 20150622 MaizeGDB 9019783 caf2 leaf color TO:0000326 PMID: 25725436 IMP T AC199526.5_FG003 Seedling leaves are white. Gene taxon:4577 20150617 Ethan Johnson MaizeGDB 941309 rnc1 leaf color TO:0000326 PMID: 21423772 IMP T GRMZM2G035820 Seedling leaves are white. Gene taxon:4577 20150619 Austin Meier -MaizeGDB 969623 mwp1 PMID:21423772 IMP GRMZM2G082264 ligule on outside of leaf at base of auricle Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 969623 mwp1 PMID:21423772 IMP GRMZM2G082264 sometimes upper leaves may be crinkly (cr) or wab-like (wavy auricle in blade-like) Gene taxon:4577 20150619 Ethan Johnson +!MaizeGDB 969623 mwp1 PMID:21423772 IMP GRMZM2G082264 ligule on outside of leaf at base of auricle Gene taxon:4577 20150619 Ethan Johnson +!MaizeGDB 969623 mwp1 PMID:21423772 IMP GRMZM2G082264 sometimes upper leaves may be crinkly (cr) or wab-like (wavy auricle in blade-like) Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 969623 mwp1 leaf sheath auricle pubescence TO:0002716 PMID:21423772 IMP T GRMZM2G082264 may have hairy sheaths Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 969623 mwp1 ligule anatomy and morphology trait TO:0002748 PMID:21423772 IMP T GRMZM2G082264 ligules on abaxial leaf surface Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 97589 vp14 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G014392 kernels germinate while still on the ear Gene taxon:4577 20150622