From: preecej <preecej@localhost>
Date: Mon, 14 Feb 2011 22:56:30 +0000 (+0000)
Subject: First iteration: Determine mapped ChEBI molecules listed in arabidopsis
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=ab15b5163f20e0eb2dd9dccbc63a1ee03995992b;p=old-jaiswallab-svn%2F.git

First iteration: Determine mapped ChEBI molecules listed in arabidopsis
but not in rice.

svn path=/; revision=88
---

diff --git a/preecej/perl_singletons/aracyc_to_reactome_conversion/ara_rice_exclusive_sets.pl b/preecej/perl_singletons/aracyc_to_reactome_conversion/ara_rice_exclusive_sets.pl
new file mode 100644
index 0000000..fc24d53
--- /dev/null
+++ b/preecej/perl_singletons/aracyc_to_reactome_conversion/ara_rice_exclusive_sets.pl
@@ -0,0 +1,68 @@
+#!usr/bin/perl -w
+use strict;
+
+system 'clear';
+
+# determine mapped ChEBI molecules listed in arabidopsis but not in rice, 
+# and vice-versa
+
+my $dir = "/home/preecej/Documents/projects/reactome/aracyc_to_reactome_conversion/ara_rice_exclusive_sets/";
+my @rice;
+my @ara;
+
+open(IN_FILE, $dir . "Rice_ReferenceNameToChEBIId.txt") or die;
+while (<IN_FILE>) {
+    my $line = $_;
+    chomp $line;
+    push(@rice,$line);
+}
+close IN_FILE;
+
+open(IN_FILE, $dir . "Ara_ReferenceNameToChEBIId.txt") or die;
+while (<IN_FILE>) {
+    my $line = $_;
+    chomp $line;
+    push(@ara,$line);
+}
+close IN_FILE;
+
+my %ara_seen; # lookup tbl
+my @rice_only; #exclusive to rice
+
+# build lookup tbl
+@ara_seen{@ara} = ();
+
+foreach my $item (@rice) {
+    push(@rice_only, $item) unless exists $ara_seen{$item};
+}
+
+my %rice_seen; # lookup tbl
+my @ara_only; #exclusive to rice
+
+# build lookup tbl
+@rice_seen{@rice} = ();
+
+foreach my $item (@ara) {
+    push(@ara_only, $item) unless exists $rice_seen{$item};
+}
+
+my $exc_rice_count = 0; 
+#print "-- [EXCLUSIVE RICE MOLECULES] --\n";
+foreach my $item (@rice_only) {
+    $exc_rice_count++;
+     #print "$exc_rice_count: $item\n";
+}
+
+#print "$exc_rice_count\n\n";
+
+my $exc_ara_count = 0; 
+print "-- [EXCLUSIVE ARABIDOPSIS MOLECULES] --\n";
+foreach my $item (@ara_only) {
+    $exc_ara_count++;
+    print "$exc_ara_count: $item\n";
+}
+
+print "$exc_ara_count\n\n";
+
+# clean up
+exit;