From: cooperl Date: Wed, 20 Feb 2019 23:22:05 +0000 (+0000) Subject: Moved annotations from seed length (TO:0000146) to grain length (TO:0000734) for... X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=b0341b24b98dc52f374e2484ae1c70319e97e669;p=associations%2F.git Moved annotations from seed length (TO:0000146) to grain length (TO:0000734) for rice svn path=/; revision=884 --- diff --git a/to-associations/to_gene_Oryza_Gramene.assoc b/to-associations/to_gene_Oryza_Gramene.assoc index cfc35c0..eb35a2b 100644 --- a/to-associations/to_gene_Oryza_Gramene.assoc +++ b/to-associations/to_gene_Oryza_Gramene.assoc @@ -486,7 +486,7 @@ GR_gene GR:0060091 BPH3 TO:0000424 GR_REF:1591 IMP T BROWN PLANTHOPPER RESISTA GR_gene GR:0060092 BPH4 TO:0000424 GR_REF:1591 IMP T BROWN PLANTHOPPER RESISTANCE 4 bph4|brown planthopper resistance-4|bph4|brown planthopper resistance-4 gene taxon:4530 20121108 Gramene GR_gene GR:0060093 BPH5 TO:0000424 GR_REF:5691 IMP T BROWN PLANTHOPPER RESISTANCE 5 bph5|brown planthopper resistance-5|bph5|brown planthopper resistance-5 gene taxon:4530 20121108 Gramene GR_gene GR:0060117 CG TO:0000089 GR_REF:3965 IMP T CIGER SHAPED PANICLE cg|cigar shaped panicle|cg|cigar shaped panicle gene taxon:4530 20121108 Gramene -GR_gene GR:0060117 CG TO:0000146 GR_REF:3965 IMP T CIGER SHAPED PANICLE cg|cigar shaped panicle|cg|cigar shaped panicle gene taxon:4530 20121108 Gramene +GR_gene GR:0060117 CG TO:0000734 GR_REF:3965 IMP T CIGER SHAPED PANICLE cg|cigar shaped panicle|cg|cigar shaped panicle gene taxon:4530 20121108 Gramene GR_gene GR:0060117 CG TO:0000391 GR_REF:3965 IMP T CIGER SHAPED PANICLE cg|cigar shaped panicle|cg|cigar shaped panicle gene taxon:4530 20121108 Gramene GR_gene GR:0060117 CG TO:0000576 GR_REF:3965 IMP T CIGER SHAPED PANICLE cg|cigar shaped panicle|cg|cigar shaped panicle gene taxon:4530 20121108 Gramene GR_gene GR:0060192 D10 TO:0000040 GR_REF:5792 IMP T DWARF KIKEIBANSHINRIKI kikeibanshinriki or toyohikaribunwai tillering dwarf|d16|d15|dwf9|d10|dwarf-10|d10|dwarf-10 gene taxon:4530 20121108 Gramene @@ -548,7 +548,7 @@ GR_gene GR:0060487 ITH TO:0000406 GR_REF:5861 IMP T INHIBITOR FOR DIFFICULT It GR_gene GR:0060489 KR2 TO:0000391 GR_REF:5859 IMP T LONG GRAIN Kr2|Long grain|Kr2|Long grain gene taxon:4530 20121108 Gramene GR_gene GR:0060492 LAM TO:0000196 GR_REF:5694 IMP T LOW AMYLOSE ENDOSPERM low allergenic protein|lam|low amylose endosperm|lam|low amylose endosperm gene taxon:4530 20121108 Gramene GR_gene GR:0060492 LAM TO:0000266 GR_REF:5694 IMP T LOW AMYLOSE ENDOSPERM low allergenic protein|lam|low amylose endosperm|lam|low amylose endosperm gene taxon:4530 20121108 Gramene -GR_gene GR:0060499 LGT TO:0000146 GR_REF:1504 IMP T LONG TWISTED GRAIN lgt|long twisted grain|lgt|long twisted grain gene taxon:4530 20121108 Gramene +GR_gene GR:0060499 LGT TO:0000734 GR_REF:1504 IMP T LONG TWISTED GRAIN lgt|long twisted grain|lgt|long twisted grain gene taxon:4530 20121108 Gramene GR_gene GR:0060499 LGT TO:0000484 GR_REF:1504 IMP T LONG TWISTED GRAIN lgt|long twisted grain|lgt|long twisted grain gene taxon:4530 20121108 Gramene GR_gene GR:0060526 MIK TO:0000089 GR_REF:6375 IMP T MICROSATELLITE-TARGETING TRANSPOSABLE ELEMENT 'Kitaake mutant' minute grain|mik|mi2|minute grain-2|mi2|minute grain-2 gene taxon:4530 20121108 Gramene GR_gene GR:0060526 MIK TO:0000137 GR_REF:6375 IMP T MICROSATELLITE-TARGETING TRANSPOSABLE ELEMENT 'Kitaake mutant' minute grain|mik|mi2|minute grain-2|mi2|minute grain-2 gene taxon:4530 20121108 Gramene @@ -715,13 +715,13 @@ GR_gene GR:0060269 DU2035 TO:0000196 GR_REF:5682 IMP T DULL ENDOSPERM 2035 dul GR_gene GR:0060331 FLO2 TO:0000266 GR_REF:2581 IMP T FLOURY ENDOSPERM 2 flo3(t)|flo2|floury endosperm-2|flo2|floury endosperm-2 gene taxon:4530 20121108 Gramene GR_gene GR:0060331 FLO2 TO:0000490 GR_REF:2581 IMP T FLOURY ENDOSPERM 2 flo3(t)|flo2|floury endosperm-2|flo2|floury endosperm-2 gene taxon:4530 20121108 Gramene GR_gene GR:0060488 KR1 TO:0000391 GR_REF:5859 IMP T SHORT GRAIN Kr1|Short grain|Kr1|Short grain gene taxon:4530 20121108 Gramene -GR_gene GR:0060503 LK1 TO:0000146 GR_REF:6375 IMP T LONG GRAIN 1 'Nagayama 77402a (N179)' long grain|lkna|lk1|long kernel-1|lk1|long kernel-1 gene taxon:4530 20121108 Gramene -GR_gene GR:0060504 LK2 TO:0000146 GR_REF:6375 IMP T LONG GRAIN 2 'Nagayama 77402b (N182)' long grain|Lknb|Lk2|Long kernel-2|Lk2|Long kernel-2 gene taxon:4530 20121108 Gramene -GR_gene GR:0060505 LKF TO:0000146 GR_REF:5679 IMP T LONG KERNEL FUSAYOSHI Lkf|'Fusayoshi' long grain|Lk3|Long kernel-3|Lk3|Long kernel-3 gene taxon:4530 20121108 Gramene -GR_gene GR:0060506 LKI1 TO:0000146 GR_REF:5966 IMP T LONG KERNEL IRAT 13 'IRAT 13' long grain-1|lki1|lk4|long kernel-4|lk4|long kernel-4 gene taxon:4530 20121108 Gramene -GR_gene GR:0060507 LKI2 TO:0000146 GR_REF:4414 IMP T LONG GRAIN 2 'IRAT 13' long grain-2|lki2|lk5|long kernel-5|lk5|long kernel-5 gene taxon:4530 20121108 Gramene +GR_gene GR:0060503 LK1 TO:0000734 GR_REF:6375 IMP T LONG GRAIN 1 'Nagayama 77402a (N179)' long grain|lkna|lk1|long kernel-1|lk1|long kernel-1 gene taxon:4530 20121108 Gramene +GR_gene GR:0060504 LK2 TO:0000734 GR_REF:6375 IMP T LONG GRAIN 2 'Nagayama 77402b (N182)' long grain|Lknb|Lk2|Long kernel-2|Lk2|Long kernel-2 gene taxon:4530 20121108 Gramene +GR_gene GR:0060505 LKF TO:0000734 GR_REF:5679 IMP T LONG KERNEL FUSAYOSHI Lkf|'Fusayoshi' long grain|Lk3|Long kernel-3|Lk3|Long kernel-3 gene taxon:4530 20121108 Gramene +GR_gene GR:0060506 LKI1 TO:0000734 GR_REF:5966 IMP T LONG KERNEL IRAT 13 'IRAT 13' long grain-1|lki1|lk4|long kernel-4|lk4|long kernel-4 gene taxon:4530 20121108 Gramene +GR_gene GR:0060507 LKI2 TO:0000734 GR_REF:4414 IMP T LONG GRAIN 2 'IRAT 13' long grain-2|lki2|lk5|long kernel-5|lk5|long kernel-5 gene taxon:4530 20121108 Gramene GR_gene GR:0060525 MI TO:0000089 GR_REF:4413 IMP T MINUTE GRAIN Minute grain|Mi|Mi1|Minute grain-1|Mi1|Minute grain-1 gene taxon:4530 20121108 Gramene -GR_gene GR:0060525 MI TO:0000146 GR_REF:4413 IMP T MINUTE GRAIN Minute grain|Mi|Mi1|Minute grain-1|Mi1|Minute grain-1 gene taxon:4530 20121108 Gramene +GR_gene GR:0060525 MI TO:0000734 GR_REF:4413 IMP T MINUTE GRAIN Minute grain|Mi|Mi1|Minute grain-1|Mi1|Minute grain-1 gene taxon:4530 20121108 Gramene GR_gene GR:0060892 SHR2 TO:0000266 GR_REF:5120 IMP T SHRUNKEN ENDOSPERM 2 sh2|shr2|shrunken endosperm-2|shr2|shrunken endosperm-2 gene taxon:4530 20121108 Gramene GR_gene GR:0060892 SHR2 TO:0000587 GR_REF:5120 IMP T SHRUNKEN ENDOSPERM 2 sh2|shr2|shrunken endosperm-2|shr2|shrunken endosperm-2 gene taxon:4530 20121108 Gramene GR_gene GR:0060947 SUG TO:0000196 GR_REF:5120 IMP T SUGARY ENDOSPERM su|sug1|sugary endosperm-1|sug1|sugary endosperm-1 gene taxon:4530 20121108 Gramene @@ -774,9 +774,9 @@ GR_gene GR:0060051 AN4 TO:0000052 GR_REF:5901 IMP T AWN 4 An6(t)|An4|Awn-4|An4 GR_gene GR:0060051 AN4 TO:0000072 GR_REF:5901 IMP T AWN 4 An6(t)|An4|Awn-4|An4|Awn-4 gene taxon:4530 20121108 Gramene GR_gene GR:0060051 AN4 TO:0000142 GR_REF:5901 IMP T AWN 4 An6(t)|An4|Awn-4|An4|Awn-4 gene taxon:4530 20121108 Gramene GR_gene GR:0060053 ANA TO:0000072 GR_REF:5859 IMP T AWN DEVELOPMENT Ana*|Awn development-a|An6|Awn-6|An6|Awn-6 gene taxon:4530 20121108 Gramene -GR_gene GR:0060053 ANA TO:0000146 GR_REF:5859 IMP T AWN DEVELOPMENT Ana*|Awn development-a|An6|Awn-6|An6|Awn-6 gene taxon:4530 20121108 Gramene +GR_gene GR:0060053 ANA TO:0000734 GR_REF:5859 IMP T AWN DEVELOPMENT Ana*|Awn development-a|An6|Awn-6|An6|Awn-6 gene taxon:4530 20121108 Gramene GR_gene GR:0060054 ANB TO:0000072 GR_REF:5859 IMP T AWN DEVELOPMENT Awn development-b|Anb*|An7|Awn-7|An7|Awn-7 gene taxon:4530 20121108 Gramene -GR_gene GR:0060054 ANB TO:0000146 GR_REF:5859 IMP T AWN DEVELOPMENT Awn development-b|Anb*|An7|Awn-7|An7|Awn-7 gene taxon:4530 20121108 Gramene +GR_gene GR:0060054 ANB TO:0000734 GR_REF:5859 IMP T AWN DEVELOPMENT Awn development-b|Anb*|An7|Awn-7|An7|Awn-7 gene taxon:4530 20121108 Gramene GR_gene GR:0060056 AO TO:0000089 GR_REF:6140 IMP T ACCERELATED INTERNODE OVERGROWTH ao|accerelated overgrowth of internode|ao|accerelated overgrowth of internode gene taxon:4530 20121108 Gramene GR_gene GR:0060056 AO TO:0000135 GR_REF:6140 IMP T ACCERELATED INTERNODE OVERGROWTH ao|accerelated overgrowth of internode|ao|accerelated overgrowth of internode gene taxon:4530 20121108 Gramene GR_gene GR:0060056 AO TO:0000145 GR_REF:6140 IMP T ACCERELATED INTERNODE OVERGROWTH ao|accerelated overgrowth of internode|ao|accerelated overgrowth of internode gene taxon:4530 20121108 Gramene @@ -1092,7 +1092,7 @@ GR_gene GR:0061171 Hst51 TO:0000042 GR_REF:10134 IMP T Hybrid sterility-51 F1 GR_gene GR:0061172 Hst52 TO:0000042 GR_REF:10134 IMP T Hybrid sterility-52 F1 sterility-26|S26(t)* gene taxon:4530 20121108 Gramene GR_gene GR:0061173 Hst53 TO:0000042 GR_REF:10138 IMP T Hybrid sterility-53 Pollen semi-sterility-27|S27(t)* gene taxon:4530 20121108 Gramene GR_gene GR:0061174 hwf1 TO:0000046 GR_REF:10139 IMP T Hybrid weakness-f1 hwf1(t)*|hybrid weakness-f1 gene taxon:4530 20121108 Gramene -GR_gene GR:0061175 lk6 TO:0000146 GR_REF:9674 IMP T long kernel-6 lk3(t)*|long kernel-3 gene taxon:4530 20121108 Gramene +GR_gene GR:0061175 lk6 TO:0000734 GR_REF:9674 IMP T long kernel-6 lk3(t)*|long kernel-3 gene taxon:4530 20121108 Gramene GR_gene GR:0061176 lrd26 TO:0000063 GR_REF:10136 IMP T lesion resembling disease-26 spotted leaf-12|spl12(t)* gene taxon:4530 20121108 Gramene GR_gene GR:0061178 MSP1 TO:0000437 GR_REF:10120 IMP T MULTIPLE SPOROCYTE 1 multiple sporocyte|Putative leucin-rich repeat protein kinase|Putative extra sporogenous cells|Msp1|multiple sporogeneous cells-1|Msp1|multiple sporogeneous cells-1|LOC_Os01g68870 gene taxon:4530 20121108 Gramene GR_gene GR:0061178 MSP1 TO:0000725 GR_REF:10120 IMP T MULTIPLE SPOROCYTE 1 multiple sporocyte|Putative leucin-rich repeat protein kinase|Putative extra sporogenous cells|Msp1|multiple sporogeneous cells-1|Msp1|multiple sporogeneous cells-1|LOC_Os01g68870 gene taxon:4530 20121108 Gramene @@ -1565,8 +1565,8 @@ GR_gene GR:0061306 hhg TO:0000510 GR_REF:0 IMP T hyper-hardening glutinous ric GR_gene GR:0061319 Hst54 TO:0000042 GR_REF:0 IMP T Hybrid sterility-54 Pollen semi-sterility|S28(t)* gene taxon:4530 20121108 Gramene GR_gene GR:0061307 hwe2 TO:0000046 GR_REF:0 IMP T hybrid weakness-e2 hybrid breakdown-l gene taxon:4530 20121108 Gramene GR_gene GR:0061308 lcy TO:0000488 GR_REF:10149 IMP T lycopene beta-cyclase gene taxon:4530 20121108 Gramene -GR_gene GR:0061327 lk7 TO:0000146 GR_REF:0 IMP T long kernel-7 slender kernel from Oryza glumaepatula-1|slk1(t)* (sk1) gene taxon:4530 20121108 Gramene -GR_gene GR:0061328 Lk8 TO:0000146 GR_REF:0 IMP T Long kernel-8 Slender kernel from Oryza glumaepatula-2|Slk2(t)* (Sk2) gene taxon:4530 20121108 Gramene +GR_gene GR:0061327 lk7 TO:0000734 GR_REF:0 IMP T long kernel-7 slender kernel from Oryza glumaepatula-1|slk1(t)* (sk1) gene taxon:4530 20121108 Gramene +GR_gene GR:0061328 Lk8 TO:0000734 GR_REF:0 IMP T Long kernel-8 Slender kernel from Oryza glumaepatula-2|Slk2(t)* (Sk2) gene taxon:4530 20121108 Gramene GR_gene GR:0060955 TMS1 TO:0000067 GR_REF:1526 IMP T THERMOSENSITIVE MALE STERILITY 1 thermosensitive male sterility-1|tms1 (TGMS)|ms80|male sterile-80|ms80|male sterile-80 gene taxon:4530 20121108 Gramene GR_gene GR:0061309 nk TO:0000287 GR_REF:0 IMP T notched kernel nk2(t)*|notched kernel gene taxon:4530 20121108 Gramene GR_gene GR:0061310 OsARF TO:0000401 GR_REF:6585 IMP T Auxin response factor gene taxon:4530 20121108 Gramene