From: preecej <preecej@localhost>
Date: Mon, 14 Nov 2011 21:23:17 +0000 (+0000)
Subject: Added more querystring options
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=b1cb0cb2258a0f43fea42e0eb54f7499013ef64f;p=old-jaiswallab-svn%2F.git

Added more querystring options

svn path=/; revision=215
---

diff --git a/Personnel/preecej/php_singletons/PO_web_service.php b/Personnel/preecej/php_singletons/PO_web_service.php
index 1317b54..d447a9d 100644
--- a/Personnel/preecej/php_singletons/PO_web_service.php
+++ b/Personnel/preecej/php_singletons/PO_web_service.php
@@ -11,10 +11,10 @@ Optional parameters:
 
 Public Request Types:
     term_search(req str search_value, opt bool inc_synonyms, 
-        opt bool inc_accessions, opt str branch_filter)
+        opt bool inc_accession_synonyms, opt str branch_filter)
     term_detail(req str accession_id)
 
-Restricted Request Types (requires user key):
+TODO: Restricted Request Types (requires user key):
     wiki_autocomplete(req str search_value)
     wiki_term_detail(req str accession_id || req str term_name)
 */
@@ -31,7 +31,18 @@ $format = isset($_GET['format']) && strtolower($_GET['format']) != 'json'
     ? strtolower($_GET['format']) 
     : 'json'; //json is the default
 
-$inc_synonyms = isset($_GET['inc_synonyms']) ? 1 : 0; // default 
+// includes synonyms in term search results
+$inc_synonyms = isset($_GET['inc_synonyms']) ? 1 : 0;
+
+// includes accession ids listed as synonyms, in both term_search and
+// term_detail methods
+$inc_accession_synonyms = isset($_GET['inc_accession_synonyms']) ? 1 : 0; 
+
+// filters out results not matching the comma-delimited list of branches
+// specified here:
+$branch_filter = isset($_GET['branch_filter']) && strlen($_GET['branch_filter']) > 0
+                    ? "'" . strtolower($_GET['branch_filter']) . "'"
+                    : "'plant_anatomy','plant_growth_and_development_stage'";
 
 /* connect to the db */
 $link = mysql_connect($_SERVER['dev_po_host'], $_SERVER['dev_po_user'], 
@@ -52,7 +63,7 @@ switch ($request_type) {
             . " LEFT JOIN term_definition d ON d.term_id = t.id"
             . " LEFT JOIN term_synonym s ON s.term_id = t.id"
             . " WHERE t.name LIKE '%$search_value%'"
-            . " AND t.term_type in ('plant_anatomy','plant_growth_and_development_stage')"
+            . " AND t.term_type in (" . $branch_filter . ")"
             . " AND t.is_obsolete = 0"
             . " AND UCASE(t.name) NOT LIKE 'OBSOLETE%'"
             . " AND UCASE(d.term_definition) NOT LIKE 'OBSOLETE%'"
@@ -63,8 +74,11 @@ switch ($request_type) {
                 . " FROM term_synonym ts"
                 . " LEFT JOIN term t2 ON ts.term_id = t2.id"
                 . " LEFT JOIN term_definition d2 ON d2.term_id = t2.id"
-                . " WHERE ts.term_synonym LIKE '%$search_value%'"
-                . " AND t2.term_type in ('plant_anatomy','plant_growth_and_development_stage')"
+                . " WHERE ts.term_synonym LIKE '%$search_value%'";
+            if (!$inc_accession_synonyms) {
+                $query .= " AND ts.acc_synonym IS NULL";
+            }
+            $query .= " AND t2.term_type in (" . $branch_filter . ")"
                 . " AND t2.is_obsolete = 0"
                 . " AND UCASE(t2.name) NOT LIKE 'OBSOLETE%'"
                 . " AND UCASE(d2.term_definition) NOT LIKE 'OBSOLETE%')";
@@ -82,7 +96,7 @@ switch ($request_type) {
                     'match_type'=>$term['match_type'],
                     'accession_id'=>$term['acc']);
                 if ($term['match_type'] == 'synonym') {
-                    $ary_match['has_parent_term_name'] = $term['parent_name'];
+                    $ary_match['term_name'] = $term['parent_name'];
                 }
                 $term_matches[] = $ary_match;
           }
@@ -110,9 +124,12 @@ switch ($request_type) {
             . " group_concat(s.term_synonym separator ', ') as synonyms"
             . " FROM term t"
             . " LEFT JOIN term_definition d ON d.term_id = t.id"
-            . " LEFT JOIN term_synonym s ON s.term_id = t.id"
-            . " WHERE t.acc = '$accession_id'"
-            . " AND t.term_type in ('plant_anatomy','plant_growth_and_development_stage')"
+            . " LEFT JOIN term_synonym s ON s.term_id = t.id";
+            if (!$inc_accession_synonyms) {
+                $query .= " AND s.acc_synonym IS NULL";
+            }
+            $query .= " WHERE t.acc = '$accession_id'"
+            . " AND t.term_type in (" . $branch_filter . ")"
             . " AND t.is_obsolete = 0"
             . " AND UCASE(t.name) NOT LIKE 'OBSOLETE%'"
             . " AND UCASE(d.term_definition) NOT LIKE 'OBSOLETE%'"